Rroxscaffold_2G00119360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007294
Physical Location & Seq
Reverse (-)
51238047 .. 51239111
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119360.1

Sequence Viewer

Length: 309 bp
ATGGCTATTACAAACAGGCTTTCTACAATTGCTGCCGAAATGGGGCAACTGAAAAATGAAATTGAAGAGCGTCGTAGAGCGCTAAACCTCTTTTTGAGAAATGTTAGAGCAAGAAATCCTGCAGAGGCAAAAGAACGCATTGGCGCTGCCAGAGAGAACATAAGGGAAAGGCAGAGGAGGCTGCAAGGGAGCGGTATTGCAAGCTCCAATGCGGGCGAAAGGCCACCCCAGGGCGCGACTTCTAGTCATGAAGTCACACTGAGGCGTCGACAAAAGCCATATTACTATAACTATAGTAAATATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.78

Weight (kDa)

10.85

Isoelectric Point (pI)

74.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 268
AccII CGCG 1 cut(s) 236
AciI CCGC 2 cut(s) 192, 212
AcyI GRCGYC 1 cut(s) 265
AfeI AGCGCT 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 42, 230
AgsI TTSAA 1 cut(s) 65
AhdI GACNNNNNGTC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 32, 146, 181
AspLEI GCGC 3 cut(s) 82, 146, 236
BbvI GCAGC 3 cut(s) 19, 133, 168
BciT130I CCWGG 1 cut(s) 230
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 120, 292
BfoI RGCGCY 2 cut(s) 83, 147
BisI GCNGC 3 cut(s) 33, 147, 182
BlsI GCNGC 3 cut(s) 34, 148, 183
Bme1390I CCNGG 1 cut(s) 230
BmeRI GACNNNNNGTC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 228, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 230
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 228, 229
BseLI CCNNNNNNNGG 2 cut(s) 42, 230
BseMII CTCAG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 3 cut(s) 19, 133, 168
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 42, 230
BsnI GGCC 1 cut(s) 223
BspACI CCGC 2 cut(s) 192, 212
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 247
BspMAI CTGCAG 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 60
BsrBI CCGCTC 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 228, 229
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 202, 214
BstDEI CTNAG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 2 cut(s) 83, 147
BstHHI GCGC 3 cut(s) 82, 146, 236
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 2 cut(s) 120, 292
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 19, 133, 168
BsuRI GGCC 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 202, 214
CciI TCATGA 1 cut(s) 247
CfoI GCGC 3 cut(s) 82, 146, 236
CseI GACGC 2 cut(s) 59, 254
CviAII CATG 1 cut(s) 248
CviJI RGCY 6 cut(s) 5, 19, 181, 204, 223, 277
CviKI_1 RGCY 6 cut(s) 5, 19, 181, 204, 223, 277
DdeI CTNAG 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 60
Eco47III AGCGCT 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 251
FaiI YATR 6 cut(s) 161, 249, 280, 288, 294, 303
FatI CATG 1 cut(s) 247
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 33, 147, 182
Fsp4HI GCNGC 3 cut(s) 33, 147, 182
FspBI CTAG 1 cut(s) 243
GlaI GCGC 3 cut(s) 81, 145, 235
GluI GCNGC 3 cut(s) 33, 147, 182
HaeII RGCGCY 2 cut(s) 83, 147
HaeIII GGCC 1 cut(s) 223
HgaI GACGC 2 cut(s) 59, 254
HhaI GCGC 3 cut(s) 82, 146, 236
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 1 cut(s) 251
Hin6I GCGC 3 cut(s) 80, 144, 234
HinP1I GCGC 3 cut(s) 80, 144, 234
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 2 cut(s) 75, 270
HpyCH4V TGCA 3 cut(s) 122, 184, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 1 cut(s) 251
HspAI GCGC 3 cut(s) 80, 144, 234
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 189, 209
LpnPI CCDG 4 cut(s) 132, 163, 215, 242
Lsp1109I GCAGC 3 cut(s) 19, 133, 168
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 253
MbiI CCGCTC 1 cut(s) 192
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 27
MluCI AATT 2 cut(s) 27, 60
MnlI CCTC 5 cut(s) 98, 118, 168, 171, 255
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 178
NlaIII CATG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 253
PagI TCATGA 1 cut(s) 247
PasI CCCWGGG 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 60
PkrI GCNGC 3 cut(s) 34, 148, 183
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PstI CTGCAG 1 cut(s) 124
SalI GTCGAC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 60
SatI GCNGC 3 cut(s) 33, 147, 182
ScrFI CCNGG 1 cut(s) 230
SetI ASST 2 cut(s) 90, 206
SfcI CTRYAG 2 cut(s) 120, 292
Sse9I AATT 2 cut(s) 27, 60
SsiI CCGC 2 cut(s) 192, 212
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 228
TaqI TCGA 1 cut(s) 268
TasI AATT 2 cut(s) 27, 60
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 32, 146, 181
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 72, 264
TspRI CASTG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.