Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007294

Physical Location & Seq

Genomic Coordinates Reverse (-)

292825 .. 293656

Gene Structure 832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTATGGCTATTACAAACAGGCTTTCTACAATTGCTGCCGAAATGGGGCAACTGAAAAATGAAATTGAAGAGCGTCGTAGAGCGCTAAACCTCTTTTTGAGAAATGTTAGAGCAAGAGATCCTGCAGAGGCAGAAGAACGCATTGGCGCTGCCAGAGAGAACATAAGGGAAAGGCAGAGGAGGCTGCAAGTGCTGCAGCAGAAGCAGCAAGCACTCATTGTGTGGGCTATCATCCTCGGTGACCGGGAAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

10.06

Weight (kDa)

10.97

Isoelectric Point (pI)

69.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07820
pyrus_communis	pycom461g00280
rosa_chinensis	RchiOBHm_Chr3g0453191 RchiOBHm_MTg0498941 RchiOBHm_MTg0499231
rosa_laevigata	RLG00000000017 RLG00000000080 RLG00000000124 RLG00000000366 RLG00000000510
rosa_multiflora	Rmu_sc0003983.1_g000010 Rmu_ssc0000163.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119360 Rroxscaffold_2G00119510 Rroxscaffold_5G00359320 Rroxscaffold_6G00430250
rosa_rugosa	Rorug02G0647100 Rorug04G0134600
rosa_samantha	Rh1BG018000 Rh1BG020300 Rh3AG049900 Rh3BG051100 Rh3CG051300 Rh3DG051900 Rh5CG231700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	116
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AlwI	GGATC	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	87
ApeKI	GCWGC	6 cut(s)	38, 152, 187, 196, 199, 208
AspLEI	GCGC	2 cut(s)	88, 152
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	254
BbvI	GCAGC	6 cut(s)	25, 139, 174, 183, 211, 220
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	259
BfmI	CTRYAG	2 cut(s)	126, 197
BfoI	RGCGCY	2 cut(s)	89, 153
BisI	GCNGC	6 cut(s)	39, 153, 188, 197, 200, 209
BlsI	GCNGC	6 cut(s)	40, 154, 189, 198, 201, 210
Bme1390I	CCNGG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	6 cut(s)	25, 139, 174, 183, 211, 220
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	121
BspMAI	CTGCAG	2 cut(s)	130, 201
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	213
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	234
BstH2I	RGCGCY	2 cut(s)	89, 153
BstHHI	GCGC	2 cut(s)	88, 152
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 193, 196, 205, 208
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	126, 197
BstV1I	GCAGC	6 cut(s)	25, 139, 174, 183, 211, 220
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	2 cut(s)	88, 152
CseI	GACGC	1 cut(s)	65
CviJI	RGCY	5 cut(s)	5, 11, 25, 187, 230
CviKI_1	RGCY	5 cut(s)	5, 11, 25, 187, 230
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
FaiI	YATR	2 cut(s)	8, 167
Fnu4HI	GCNGC	6 cut(s)	39, 153, 188, 197, 200, 209
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	6 cut(s)	39, 153, 188, 197, 200, 209
FspBI	CTAG	1 cut(s)	259
GlaI	GCGC	2 cut(s)	87, 151
GluI	GCNGC	6 cut(s)	39, 153, 188, 197, 200, 209
HaeII	RGCGCY	2 cut(s)	89, 153
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	2 cut(s)	88, 152
Hin6I	GCGC	2 cut(s)	86, 150
HinP1I	GCGC	2 cut(s)	86, 150
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	128, 190, 199
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 193, 196, 205, 208
HspAI	GCGC	2 cut(s)	86, 150
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	66
LpnPI	CCDG	3 cut(s)	7, 138, 169
Lsp1109I	GCAGC	6 cut(s)	25, 139, 174, 183, 211, 220
MaeI	CTAG	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	83, 149
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	33, 66
MnlI	CCTC	5 cut(s)	104, 124, 174, 177, 248
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	184, 193, 196, 205, 208
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	66
PkrI	GCNGC	6 cut(s)	40, 154, 189, 198, 201, 210
PspEI	GGTNACC	1 cut(s)	242
PstI	CTGCAG	2 cut(s)	130, 201
PsuI	RGATCY	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	6 cut(s)	39, 153, 188, 197, 200, 209
Sau3AI	GATC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	126, 197
SgeI	CNNG	7 cut(s)	34, 129, 137, 168, 203, 224, 251
Sse9I	AATT	2 cut(s)	33, 66
SspMI	CTAG	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	246
TasI	AATT	2 cut(s)	33, 66
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	6 cut(s)	38, 152, 187, 196, 199, 208
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	78
XspI	CTAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.