Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007294

Physical Location & Seq

Genomic Coordinates Forward (+)

3473733 .. 3476580

Gene Structure 2848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTTGTGTGGATCCAATTCTGATAAGAGATCGTATGCTTTTTCTCAAGGCCCAAATAAGGTCTTTGGAGAACAGGAAGAAAGGGCTGCTTCAGCAACAGGCGGAGCTGCTTGTGAAGGTGGCCCTCCTCCGTGAGCCAACAACCACTGGGGAAGAAGAACATGAAGAAGAGACTGGGTTGAGATCCCCGGTTTGGCCTTATGTACTTGTGGGTGGACACGTGGATGGAGCTCTGCTGAACCTTTTAGTGGGGAAAAGCCAGATTGTTGCTCCAAGTATTTTTACATGCATCTTCGATTTTGATACTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.67

Weight (kDa)

5.31

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07820
pyrus_communis	pycom461g00280
rosa_chinensis	RchiOBHm_Chr3g0453191 RchiOBHm_MTg0498941 RchiOBHm_MTg0499231
rosa_laevigata	RLG00000000017 RLG00000000080 RLG00000000124 RLG00000000366 RLG00000000510
rosa_multiflora	Rmu_sc0003983.1_g000010 Rmu_ssc0000163.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119360 Rroxscaffold_2G00119510 Rroxscaffold_5G00359320 Rroxscaffold_6G00430250
rosa_rugosa	Rorug02G0647100 Rorug04G0134600
rosa_samantha	Rh1BG018000 Rh1BG020300 Rh3AG049900 Rh3BG051100 Rh3CG051300 Rh3DG051900 Rh5CG231700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	3 cut(s)	8, 21, 180
AcuI	CTGAAG	1 cut(s)	77
AcvI	CACGTG	1 cut(s)	223
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	60, 195, 250
AflIII	ACRYGT	1 cut(s)	220
AluBI	AGCT	2 cut(s)	109, 233
AluI	AGCT	2 cut(s)	109, 233
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	8, 21, 180
AoxI	GGCC	3 cut(s)	51, 123, 197
ApeKI	GCWGC	2 cut(s)	88, 109
AspS9I	GGNCC	2 cut(s)	52, 124
AsuC2I	CCSGG	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	235
BbrPI	CACGTG	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	75, 96
BccI	CCATC	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	89, 110
BlsI	GCNGC	2 cut(s)	90, 111
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	52, 124
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	2 cut(s)	159, 186
BmsI	GCATC	1 cut(s)	300
BmuI	ACTGGG	2 cut(s)	159, 186
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	191
BsaAI	YACGTR	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 195, 250
Bse1I	ACTGG	2 cut(s)	154, 181
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	60, 195, 250
BseNI	ACTGG	2 cut(s)	154, 181
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	75, 96
BshFI	GGCC	3 cut(s)	53, 125, 199
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	60, 195, 250
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	53, 125, 199
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	13, 31, 185
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	3 cut(s)	53, 125, 199
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	8, 21, 180
BsrI	ACTGG	2 cut(s)	154, 181
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	13, 31, 185
Bst6I	CTCTTC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	3 cut(s)	16, 34, 188
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	13, 31, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	75, 96
BstX2I	RGATCY	2 cut(s)	13, 185
BstYI	RGATCY	2 cut(s)	13, 185
BsuRI	GGCC	3 cut(s)	53, 125, 199
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	52, 124
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	2 cut(s)	164, 288
CviJI	RGCY	8 cut(s)	53, 88, 109, 125, 139, 199, 233, 261
CviKI_1	RGCY	8 cut(s)	53, 88, 109, 125, 139, 199, 233, 261
CviQI	GTAC	1 cut(s)	206
DpnI	GATC	3 cut(s)	15, 33, 187
DpnII	GATC	3 cut(s)	13, 31, 185
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	2 cut(s)	167, 291
FaiI	YATR	4 cut(s)	38, 165, 204, 289
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	2 cut(s)	163, 287
Fnu4HI	GCNGC	2 cut(s)	89, 110
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	2 cut(s)	89, 110
GluI	GCNGC	2 cut(s)	89, 110
HaeIII	GGCC	3 cut(s)	53, 125, 199
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	2 cut(s)	167, 291
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	167, 291
Kzo9I	GATC	3 cut(s)	13, 31, 185
LmnI	GCTCC	3 cut(s)	106, 230, 277
LpnPI	CCDG	6 cut(s)	61, 86, 135, 162, 204, 275
Lsp1109I	GCAGC	2 cut(s)	75, 96
LweI	GCATC	1 cut(s)	300
MaeII	ACGT	1 cut(s)	222
MalI	GATC	3 cut(s)	15, 33, 187
MboI	GATC	3 cut(s)	13, 31, 185
MboII	GAAGA	6 cut(s)	91, 167, 170, 179, 182, 286
MflI	RGATCY	2 cut(s)	13, 185
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	2 cut(s)	137, 140
Mph1103I	ATGCAT	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	3 cut(s)	13, 31, 185
NlaIII	CATG	2 cut(s)	167, 291
NlaIV	GGNNCC	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	291
PkrI	GCNGC	2 cut(s)	90, 111
PmaCI	CACGTG	1 cut(s)	223
PmlI	CACGTG	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	52, 124
PsuI	RGATCY	2 cut(s)	13, 185
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	235
SatI	GCNGC	2 cut(s)	89, 110
Sau3AI	GATC	3 cut(s)	13, 31, 185
Sau96I	GGNCC	2 cut(s)	52, 124
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	6 cut(s)	65, 111, 123, 225, 235, 246
SfaNI	GCATC	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	104
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	189
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	205
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	2 cut(s)	88, 109
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	154
XceI	RCATGY	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.