Rh5CG231700

ATP synthase subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007294
Physical Location & Seq
Forward (+)
24053034 .. 24053411
378 bp
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UTR
Exon/CDS
Intron
Rh5CG231700.1

Sequence Viewer

Length: 378 bp
ATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGACGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTTTAGTCATTTATGCAGCTGTCAATGGATTATATGATCGAATGCCACTAGACAGAATCTCTCAATATGAAAGAGCCATTCCAAATAGTATAAAACCAGAATTACTACAATCCCTTTTAGAAAAGGGTGGGTTAACTAACAAAAGAAAGATGGAACCAGATGCATTCTTAAAAGAAAGCGCTTTGCCTTTCCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_C ATP-synt_ab_N

Protein Analysis

125

Amino Acids

14.01

Weight (kDa)

9.04

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab_C PF00306 1 - 111 3.6e-38 ATP synthase alpha/beta chain, C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 48
AciI CCGC 2 cut(s) 15, 57
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 1 cut(s) 135
AfeI AGCGCT 1 cut(s) 358
AgsI TTSAA 2 cut(s) 24, 170
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 89, 194
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 76, 206
BccI CCATC 1 cut(s) 322
BfaI CTAG 1 cut(s) 227
BfoI RGCGCY 1 cut(s) 360
BisI GCNGC 3 cut(s) 57, 90, 195
BlsI GCNGC 3 cut(s) 58, 91, 196
BmcAI AGTACT 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 76, 206
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 56
BsmI GAATGC 2 cut(s) 225, 341
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 214
Bsp68I TCGCGA 1 cut(s) 48
BspACI CCGC 2 cut(s) 15, 57
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 33
BssMI GATC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 62, 98
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 76, 206
BsuRI GGCC 1 cut(s) 56
BtuMI TCGCGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 359
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 134
CviJI RGCY 4 cut(s) 56, 124, 197, 254
CviKI_1 RGCY 4 cut(s) 56, 124, 197, 254
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 343
FaiI YATR 6 cut(s) 153, 192, 211, 213, 246, 269
Fnu4HI GCNGC 3 cut(s) 57, 90, 195
Fsp4HI GCNGC 3 cut(s) 57, 90, 195
FspBI CTAG 1 cut(s) 227
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 57, 90, 195
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 1 cut(s) 56
HgaI GACGC 1 cut(s) 95
HhaI GCGC 1 cut(s) 359
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 94, 234
HpaI GTTAAC 1 cut(s) 312
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 119, 155, 194, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 98
HpyF3I CTNAG 1 cut(s) 96
HspAI GCGC 1 cut(s) 357
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 14, 83, 288, 348
Lsp1109I GCAGC 2 cut(s) 76, 206
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 227
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MfeI CAATTG 1 cut(s) 165
MluCI AATT 5 cut(s) 32, 68, 165, 177, 278
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 1 cut(s) 107
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 2 cut(s) 311, 347
MspA1I CMGCKG 1 cut(s) 197
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 2 cut(s) 225, 341
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 62, 98
NdeII GATC 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 333
NruI TCGCGA 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 343
PctI GAATGC 2 cut(s) 225, 341
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 3 cut(s) 58, 91, 196
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 197
RruI TCGCGA 1 cut(s) 48
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 311, 347
SatI GCNGC 3 cut(s) 57, 90, 195
Sau3AI GATC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 1 cut(s) 88
SetI ASST 3 cut(s) 84, 118, 199
SfaNI GCATC 1 cut(s) 328
SgeI CNNG 9 cut(s) 20, 41, 59, 95, 110, 132, 239, 287, 347
Sse9I AATT 5 cut(s) 32, 68, 165, 177, 278
SsiI CCGC 2 cut(s) 15, 57
SspMI CTAG 1 cut(s) 227
TaqI TCGA 1 cut(s) 217
TasI AATT 5 cut(s) 32, 68, 165, 177, 278
TatI WGTACW 1 cut(s) 133
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 2 cut(s) 311, 347
Tru9I TTAA 2 cut(s) 311, 347
TseI GCWGC 2 cut(s) 89, 194
TspDTI ATGAA 2 cut(s) 17, 261
XapI RAATTY 1 cut(s) 177
XspI CTAG 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.