Rorug02G0647100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007294
Physical Location & Seq
Forward (+)
75704901 .. 75708635
3735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0647100.1

Sequence Viewer

Length: 1020 bp
ATGGATCCCAAGGCCTCAAAGCAGCCTCAGGAGATACCCAGCTTCTTGAGCCTCCCACAACCTGAGCAACAACATCATCATCAGCAACAGCCCAACACCAACACCAACACCAACACCATGAGTGAGAACAACAACAACCACCATAACAACAACAACGTTGTCAAACCGGCGGAGATCAAAGACTTCCAGATTGCGATTGCGGACAAAGACGAAACCAAGAAGCAGTTGGCGCCCAAACGTAGCTCAAACAAAGACAGACACACAAAGGTGGAAGGCAGAGGAAGAAGGATAAGGATGCCGGCTCTTTGCGCCGCGAGAATCTTCCAATTGACTCGAGAATTGGGCCACAAATCGGACGGAGAAACAATCCAATGGCTGCTGCACCAGGCGGAGCCGTCGATACTTGCCGCCACCGGCACGGGGACGATCCCGGCGTCGGCTCTGGCGGCGGCAGGCGGGTCGGTGTCGCAGCAGGGGACTTCTCTATCAGCTGGTCTGCACCAAAAGATAGATGACTTAGGAGGGGGAGGGTCCAGCGGAGGTAGGACCAGTTGGGCTATGGTGGGAGGGAATTTAGGGAGGCCCCATGTGGCTGCAGCAACTGGGCTATGGCCCCCTGCCGGGTTTGGTTTTTCTTCACAGTCATCTTCATCTGGTCCATCTACTACAAATCTGGGAGGGACTGAGAGCAGCTCAAATTACTTGCAAAAGATTGGGTTTCCTGGGGGGTTTGACTTGCCAGTCACCAACATGGGTCCTATGAGCTTCACTTCAATTCTGGGTGGGGGAAGTCAACAGCTGCCTGGTTTGGAACTTGGGTTGTCACAAGATGGGCATCTTGGGGTTTTGAACTCTCAGGCTGCTTTGAACCAGATATACCAGCAGATGGGTCATGCTAGAGTGCATCACCAGCAGCAACACCACCCGCAGCAGCACCAGCACCAGCACCAGCACCAACACCAACACCAACACCAGCAAGCTCCGTCTTCTAAGGATGATTCTCAAGGCTCAGGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

36.25

Weight (kDa)

8.68

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 82 - 327 7.2e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 886
AccII CGCG 1 cut(s) 314
AclI AACGTT 1 cut(s) 156
AclWI GGATC 2 cut(s) 12, 421
AcsI RAATTY 1 cut(s) 571
AcyI GRCGYC 2 cut(s) 230, 434
AfiI CCNNNNNNNGG 6 cut(s) 352, 420, 436, 620, 621, 886
AgsI TTSAA 3 cut(s) 774, 850, 868
AjnI CCWGG 3 cut(s) 384, 721, 802
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 7 cut(s) 42, 243, 491, 693, 765, 799, 980
AluI AGCT 7 cut(s) 42, 243, 491, 693, 765, 799, 980
AlwI GGATC 2 cut(s) 12, 421
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 4 cut(s) 12, 343, 581, 611
ApoI RAATTY 1 cut(s) 571
AspLEI GCGC 2 cut(s) 232, 311
AspS9I GGNCC 7 cut(s) 343, 531, 546, 582, 612, 656, 755
AsuC2I CCSGG 2 cut(s) 431, 622
AsuHPI GGTGA 2 cut(s) 736, 899
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 4 cut(s) 531, 546, 656, 755
AxyI CCTNAGG 1 cut(s) 27
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 978
BccI CCATC 3 cut(s) 667, 824, 880
BceAI ACGGC 1 cut(s) 379
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 3 cut(s) 386, 723, 804
BcnI CCSGG 2 cut(s) 431, 622
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 1 cut(s) 594
BfoI RGCGCY 1 cut(s) 233
Bme1390I CCNGG 5 cut(s) 386, 431, 622, 723, 804
Bme18I GGWCC 4 cut(s) 531, 546, 656, 755
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 7 cut(s) 343, 531, 546, 582, 612, 656, 755
BmiI GGNNCC 7 cut(s) 6, 231, 393, 532, 584, 614, 756
BmrFI CCNGG 5 cut(s) 386, 431, 622, 723, 804
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 3 cut(s) 285, 844, 913
BmuI ACTGGG 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 978
BplI GAGNNNNNCTC 2 cut(s) 677, 709
Bpu10I CCTNAGC 2 cut(s) 63, 1009
BpuEI CTTGAG 2 cut(s) 67, 987
BpuMI CCSGG 2 cut(s) 431, 622
BsaBI GATNNNNATC 1 cut(s) 834
BsaHI GRCGYC 2 cut(s) 230, 434
BsaJI CCNNGG 2 cut(s) 9, 722
Bsc4I CCNNNNNNNGG 6 cut(s) 352, 420, 436, 620, 621, 886
Bse118I RCCGGY 3 cut(s) 166, 298, 413
Bse1I ACTGG 3 cut(s) 549, 607, 740
Bse21I CCTNAGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 3 cut(s) 386, 723, 804
BseDI CCNNGG 2 cut(s) 9, 722
BseGI GGATG 2 cut(s) 300, 1000
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 6 cut(s) 352, 420, 436, 620, 621, 886
BseMII CTCAG 4 cut(s) 41, 54, 675, 869
BseNI ACTGG 3 cut(s) 549, 607, 740
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 2 cut(s) 365, 482
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 4 cut(s) 14, 345, 583, 613
BshNI GGYRCC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 5 cut(s) 167, 299, 414, 431, 621
BslFI GGGAC 3 cut(s) 436, 490, 694
BslI CCNNNNNNNGG 6 cut(s) 352, 420, 436, 620, 621, 886
BsmFI GGGAC 3 cut(s) 436, 490, 694
BsnI GGCC 4 cut(s) 14, 345, 583, 613
BsoBI CYCGRG 1 cut(s) 333
Bsp143I GATC 3 cut(s) 4, 174, 426
BspANI GGCC 4 cut(s) 14, 345, 583, 613
BspCNI CTCAG 4 cut(s) 40, 55, 676, 868
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 7 cut(s) 6, 231, 393, 532, 584, 614, 756
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 2 cut(s) 12, 421
BspT107I GGYRCC 1 cut(s) 229
BsrFI RCCGGY 3 cut(s) 166, 298, 413
BsrI ACTGG 3 cut(s) 549, 607, 740
BssAI RCCGGY 3 cut(s) 166, 298, 413
BssECI CCNNGG 2 cut(s) 9, 722
BssMI GATC 3 cut(s) 4, 174, 426
BssNI GRCGYC 2 cut(s) 230, 434
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 3 cut(s) 386, 723, 804
Bst4CI ACNGT 2 cut(s) 642, 1017
BstACI GRCGYC 2 cut(s) 230, 434
BstC8I GCNNGC 3 cut(s) 300, 454, 978
BstDEI CTNAG 7 cut(s) 27, 63, 517, 684, 855, 990, 1009
BstF5I GGATG 2 cut(s) 300, 1000
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 232, 311
BstKTI GATC 3 cut(s) 7, 177, 429
BstMBI GATC 3 cut(s) 4, 174, 426
BstMWI GCNNNNNNNGC 6 cut(s) 48, 229, 308, 446, 910, 937
BstNI CCWGG 3 cut(s) 386, 723, 804
BstSCI CCNGG 5 cut(s) 384, 429, 620, 721, 802
BstSFI CTRYAG 1 cut(s) 594
BstUI CGCG 1 cut(s) 314
BstV2I GAAGAC 1 cut(s) 978
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 14, 345, 583, 613
BtsCI GGATG 2 cut(s) 300, 1000
Cac8I GCNNGC 3 cut(s) 300, 454, 978
CaiI CAGNNNCTG 1 cut(s) 602
CfoI GCGC 2 cut(s) 232, 311
Cfr10I RCCGGY 3 cut(s) 166, 298, 413
Cfr13I GGNCC 7 cut(s) 343, 531, 546, 582, 612, 656, 755
CseI GACGC 1 cut(s) 423
CviAII CATG 4 cut(s) 118, 587, 751, 893
DdeI CTNAG 7 cut(s) 27, 63, 517, 684, 855, 990, 1009
DinI GGCGCC 1 cut(s) 231
DpnI GATC 3 cut(s) 6, 176, 428
DpnII GATC 3 cut(s) 4, 174, 426
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
EciI GGCGGA 2 cut(s) 185, 404
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 14
Eco47I GGWCC 4 cut(s) 531, 546, 656, 755
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 333
EcoO109I RGGNCCY 2 cut(s) 582, 755
EcoRII CCWGG 3 cut(s) 384, 721, 802
EcoT14I CCWWGG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 121, 590, 754, 896
FaiI YATR 9 cut(s) 119, 144, 560, 588, 610, 752, 761, 877, 894
FaqI GGGAC 3 cut(s) 436, 490, 694
FatI CATG 4 cut(s) 117, 586, 750, 892
FauI CCCGC 2 cut(s) 449, 933
FokI GGATG 2 cut(s) 307, 1007
FspBI CTAG 1 cut(s) 897
GlaI GCGC 2 cut(s) 231, 310
GsaI CCCAGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 4 cut(s) 14, 345, 583, 613
HapII CCGG 5 cut(s) 167, 299, 414, 431, 621
HgaI GACGC 1 cut(s) 423
HhaI GCGC 2 cut(s) 232, 311
Hin1I GRCGYC 2 cut(s) 230, 434
Hin1II CATG 4 cut(s) 121, 590, 754, 896
Hin6I GCGC 2 cut(s) 230, 309
HinP1I GCGC 2 cut(s) 230, 309
HincII GTYRAC 1 cut(s) 794
HindII GTYRAC 1 cut(s) 794
HinfI GANTC 3 cut(s) 318, 331, 998
HpaII CCGG 5 cut(s) 167, 299, 414, 431, 621
HphI GGTGA 2 cut(s) 736, 899
Hpy166II GTNNAC 1 cut(s) 794
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 5 cut(s) 29, 46, 187, 335, 1011
Hpy8I GTNNAC 1 cut(s) 794
Hpy99I CGWCG 2 cut(s) 400, 439
HpyAV CCTTC 2 cut(s) 266, 279
HpyCH4III ACNGT 2 cut(s) 642, 1017
HpyCH4IV ACGT 2 cut(s) 156, 238
HpyCH4V TGCA 5 cut(s) 382, 499, 596, 706, 904
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 229, 308, 446, 910, 937
HpyF3I CTNAG 7 cut(s) 27, 63, 517, 684, 855, 990, 1009
HpySE526I ACGT 2 cut(s) 156, 238
Hsp92I GRCGYC 2 cut(s) 230, 434
Hsp92II CATG 4 cut(s) 121, 590, 754, 896
HspAI GCGC 2 cut(s) 230, 309
KasI GGCGCC 1 cut(s) 229
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 4, 174, 426
LmnI GCTCC 2 cut(s) 391, 985
LweI GCATC 3 cut(s) 285, 844, 913
MaeI CTAG 1 cut(s) 897
MaeII ACGT 2 cut(s) 156, 238
MaeIII GTNAC 2 cut(s) 742, 822
MalI GATC 3 cut(s) 6, 176, 428
MboI GATC 3 cut(s) 4, 174, 426
MboII GAAGA 5 cut(s) 294, 313, 627, 639, 978
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 4
MluCI AATT 5 cut(s) 326, 338, 571, 697, 774
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 325
MroNI GCCGGC 1 cut(s) 298
MslI CAYNNNNRTG 2 cut(s) 266, 749
MspA1I CMGCKG 3 cut(s) 491, 537, 799
MspI CCGG 5 cut(s) 167, 299, 414, 431, 621
MspR9I CCNGG 5 cut(s) 386, 431, 622, 723, 804
MunI CAATTG 1 cut(s) 326
MvaI CCWGG 3 cut(s) 386, 723, 804
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 6 cut(s) 48, 229, 308, 446, 910, 937
NaeI GCCGGC 1 cut(s) 300
NarI GGCGCC 1 cut(s) 230
NciI CCSGG 2 cut(s) 431, 622
NdeII GATC 3 cut(s) 4, 174, 426
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 121, 590, 754, 896
NlaIV GGNNCC 7 cut(s) 6, 231, 393, 532, 584, 614, 756
NmuCI GTSAC 2 cut(s) 742, 822
OliI CACNNNNGTG 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 333
PceI AGGCCT 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 318, 998
PflMI CCANNNNNTGG 1 cut(s) 886
PleI GAGTC 1 cut(s) 325
PluTI GGCGCC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 755
Psp1406I AACGTT 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 755
Psp6I CCWGG 3 cut(s) 384, 721, 802
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 3 cut(s) 384, 721, 802
PspN4I GGNNCC 7 cut(s) 6, 231, 393, 532, 584, 614, 756
PspPI GGNCC 7 cut(s) 343, 531, 546, 582, 612, 656, 755
PspPPI RGGWCCY 1 cut(s) 755
PsrI GAACNNNNNNTAC 2 cut(s) 860, 892
PstI CTGCAG 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 2 cut(s) 491, 799
RseI CAYNNNNRTG 2 cut(s) 266, 749
Sau3AI GATC 3 cut(s) 4, 174, 426
Sau96I GGNCC 7 cut(s) 343, 531, 546, 582, 612, 656, 755
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 5 cut(s) 386, 431, 622, 723, 804
SfaNI GCATC 3 cut(s) 285, 844, 913
SfcI CTRYAG 1 cut(s) 594
SfoI GGCGCC 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 333
SinI GGWCC 4 cut(s) 531, 546, 656, 755
SlaI CTCGAG 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 266, 749
SmlI CTYRAG 3 cut(s) 46, 333, 1002
SmoI CTYRAG 3 cut(s) 46, 333, 1002
Sse9I AATT 5 cut(s) 326, 338, 571, 697, 774
SseBI AGGCCT 1 cut(s) 14
SspDI GGCGCC 1 cut(s) 229
SspMI CTAG 1 cut(s) 897
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 5 cut(s) 384, 429, 620, 721, 802
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 642, 1017
TaiI ACGT 2 cut(s) 159, 241
TaqI TCGA 2 cut(s) 334, 398
TasI AATT 5 cut(s) 326, 338, 571, 697, 774
TauI GCSGC 4 cut(s) 314, 410, 449, 452
TfiI GAWTC 2 cut(s) 318, 998
TseFI GTSAC 2 cut(s) 742, 822
Tsp45I GTSAC 2 cut(s) 742, 822
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 2 cut(s) 372, 972
Van91I CCANNNNNTGG 1 cut(s) 886
VpaK11BI GGWCC 4 cut(s) 531, 546, 656, 755
XapI RAATTY 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 2 cut(s) 223, 556
XhoI CTCGAG 1 cut(s) 333
XspI CTAG 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.