Rh3BG051100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007294
Physical Location & Seq
Forward (+)
3473631 .. 3473921
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG051100.1

Sequence Viewer

Length: 291 bp
ATGGATATTGCTGGGAGACTTGCGAGGATTCAACAAGAGATTGTTCAGGTGGAAAACGAGAAGCAGCACAGAGAGTACACACTGGGTTTGTTCTGGGAGCACATGCCTTGTGTGGATCCAATTCTGATAAGAGATCGTATGCTTTTTCTCAAGGCCCAAATAAGGTCTTTGGAGAACAGGAAGAAAGGGCTGCTTCAGCAACAGGCGGAGCTGCTTGTGAAGGTGGCCCTCCTCCGTGAGCCAACAACCACTGGGGAAGAAGAACATGAAGAAGAGACTGGTAGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.28

Weight (kDa)

5.63

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 110, 123
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 10, 269
AlwI GGATC 2 cut(s) 110, 123
AoxI GGCC 2 cut(s) 153, 225
ApeKI GCWGC 3 cut(s) 64, 190, 211
AspS9I GGNCC 2 cut(s) 154, 226
BamHI GGATCC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 76, 177, 198
BcoDI GTCTC 2 cut(s) 10, 269
BisI GCNGC 3 cut(s) 65, 191, 212
BlsI GCNGC 3 cut(s) 66, 192, 213
BmgT120I GGNCC 2 cut(s) 154, 226
BmiI GGNNCC 1 cut(s) 117
BmrI ACTGGG 2 cut(s) 92, 261
BmuI ACTGGG 2 cut(s) 92, 261
BpuEI CTTGAG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 3 cut(s) 87, 256, 283
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 3 cut(s) 87, 256, 283
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 3 cut(s) 76, 177, 198
BseYI CCCAGC 1 cut(s) 11
BshFI GGCC 2 cut(s) 155, 227
BsiHKAI GWGCWC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 10, 269
BsnI GGCC 2 cut(s) 155, 227
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 115, 133
BspACI CCGC 1 cut(s) 206
BspANI GGCC 2 cut(s) 155, 227
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 2 cut(s) 110, 123
BsrI ACTGG 3 cut(s) 87, 256, 283
BssMI GATC 2 cut(s) 115, 133
Bst6I CTCTTC 1 cut(s) 267
BstKTI GATC 2 cut(s) 118, 136
BstMAI GTCTC 2 cut(s) 10, 269
BstMBI GATC 2 cut(s) 115, 133
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 76, 177, 198
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 2 cut(s) 155, 227
BtsIMutI CAGTG 2 cut(s) 80, 249
Cfr13I GGNCC 2 cut(s) 154, 226
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 103, 266
CviJI RGCY 5 cut(s) 155, 190, 211, 227, 241
CviKI_1 RGCY 5 cut(s) 155, 190, 211, 227, 241
CviQI GTAC 1 cut(s) 76
DpnI GATC 2 cut(s) 117, 135
DpnII GATC 2 cut(s) 115, 133
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 179
FaeI CATG 2 cut(s) 106, 269
FaiI YATR 3 cut(s) 104, 140, 267
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 2 cut(s) 102, 265
Fnu4HI GCNGC 3 cut(s) 65, 191, 212
Fsp4HI GCNGC 3 cut(s) 65, 191, 212
GluI GCNGC 3 cut(s) 65, 191, 212
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 155, 227
Hin1II CATG 2 cut(s) 106, 269
HinfI GANTC 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
Hsp92II CATG 2 cut(s) 106, 269
Kzo9I GATC 2 cut(s) 115, 133
LmnI GCTCC 2 cut(s) 97, 208
LpnPI CCDG 7 cut(s) 32, 68, 79, 163, 188, 237, 264
Lsp1109I GCAGC 3 cut(s) 76, 177, 198
MalI GATC 2 cut(s) 117, 135
MboI GATC 2 cut(s) 115, 133
MboII GAAGA 5 cut(s) 193, 269, 272, 281, 284
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 120
MnlI CCTC 3 cut(s) 18, 239, 242
MseI TTAA 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 2 cut(s) 115, 133
NlaIII CATG 2 cut(s) 106, 269
NlaIV GGNNCC 1 cut(s) 117
NspI RCATGY 1 cut(s) 106
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 3 cut(s) 66, 192, 213
PspFI CCCAGC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 154, 226
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 289
SatI GCNGC 3 cut(s) 65, 191, 212
Sau3AI GATC 2 cut(s) 115, 133
Sau96I GGNCC 2 cut(s) 154, 226
SduI GDGCHC 1 cut(s) 102
SetI ASST 4 cut(s) 51, 167, 213, 225
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 120
SsiI CCGC 1 cut(s) 206
TasI AATT 1 cut(s) 120
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TscAI CASTG 2 cut(s) 87, 256
TseI GCWGC 3 cut(s) 64, 190, 211
TspDTI ATGAA 1 cut(s) 282
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 87, 256
XceI RCATGY 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.