RLG00000000510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007294
Physical Location & Seq
Forward (+)
1273838 .. 1275269
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000510

Sequence Viewer

Length: 441 bp
ATGGCTATGGCTATTACAAACAGGCTTTCTACAATTGCTGCCGAAATGGGGCAACTGAAAAATGAAATTGAAGAGCGTCGTAGAGCGCTAAACCTCTTTTTGAGAAATGTTAGAGCAAGAAATCCTGCAGAGGCAGAAGAACGCATTGGCGCTGCCAGAGAGAACATAAGGGAAAGGCAGAGGAGGCTGCAAGTGCTGCAGCAGAAGCAGCAAGCACTCATTGTGTGGGCTATCATCCTCGAAAATGCTCTTCGAAATACTCGAAGAATGTTAAATGGTTTCTTGAGGCATCTTCGCTCCGTGAACCCGGCTGCTATTGAAGCCCGAATGGAAGCAAGCCGTCAAAGAATTCGGGAACTAGAAGAAAGACTCCAGGGACTACGCCAGGAGCAGCAGGCACTGATCGTGGAGGCAATCTGCCTTGGTGCCCGAGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

17.03

Weight (kDa)

11.41

Isoelectric Point (pI)

75.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AcsI RAATTY 1 cut(s) 348
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 71, 320
AjnI CCWGG 2 cut(s) 372, 384
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AlwNI CAGNNNCTG 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 429
Aor51HI AGCGCT 1 cut(s) 87
ApeKI GCWGC 8 cut(s) 38, 152, 187, 196, 199, 208, 311, 391
ApoI RAATTY 1 cut(s) 348
AspLEI GCGC 2 cut(s) 88, 152
AsuC2I CCSGG 1 cut(s) 308
AsuII TTCGAA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 425
BbvI GCAGC 8 cut(s) 25, 139, 174, 183, 211, 220, 298, 403
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 2 cut(s) 374, 386
BcnI CCSGG 1 cut(s) 308
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 2 cut(s) 126, 197
BfoI RGCGCY 2 cut(s) 89, 153
BisI GCNGC 8 cut(s) 39, 153, 188, 197, 200, 209, 312, 392
BlsI GCNGC 8 cut(s) 40, 154, 189, 198, 201, 210, 313, 393
Bme1390I CCNGG 3 cut(s) 308, 374, 386
BmeT110I CYCGRG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 3 cut(s) 308, 374, 386
BmsI GCATC 1 cut(s) 298
BpmI CTGGAG 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 373, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseBI CCWGG 2 cut(s) 374, 386
BseDI CCNNGG 2 cut(s) 373, 421
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 8 cut(s) 25, 139, 174, 183, 211, 220, 298, 403
BshNI GGYRCC 1 cut(s) 425
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 390
BsoBI CYCGRG 1 cut(s) 429
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 427
BspMAI CTGCAG 2 cut(s) 130, 201
BspQI GCTCTTC 2 cut(s) 66, 255
BspT104I TTCGAA 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 373, 421
BssMI GATC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 2 cut(s) 374, 386
Bst6I CTCTTC 2 cut(s) 66, 255
BstAPI GCANNNNNTGC 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 3 cut(s) 213, 337, 396
BstF5I GGATG 1 cut(s) 234
BstH2I RGCGCY 2 cut(s) 89, 153
BstHHI GCGC 2 cut(s) 88, 152
BstKTI GATC 1 cut(s) 405
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 6 cut(s) 184, 193, 196, 205, 208, 320
BstNI CCWGG 2 cut(s) 374, 386
BstSCI CCNGG 3 cut(s) 306, 372, 384
BstSFI CTRYAG 2 cut(s) 126, 197
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 8 cut(s) 25, 139, 174, 183, 211, 220, 298, 403
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 3 cut(s) 213, 337, 396
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 2 cut(s) 88, 152
CseI GACGC 1 cut(s) 65
CviJI RGCY 8 cut(s) 5, 11, 25, 187, 230, 311, 323, 339
CviKI_1 RGCY 8 cut(s) 5, 11, 25, 187, 230, 311, 323, 339
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 66, 255
EarI CTCTTC 2 cut(s) 66, 255
Eco130I CCWWGG 1 cut(s) 421
Eco47III AGCGCT 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 372, 384
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaiI YATR 2 cut(s) 8, 167
FaqI GGGAC 1 cut(s) 390
Fnu4HI GCNGC 8 cut(s) 39, 153, 188, 197, 200, 209, 312, 392
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 8 cut(s) 39, 153, 188, 197, 200, 209, 312, 392
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 87, 151
GluI GCNGC 8 cut(s) 39, 153, 188, 197, 200, 209, 312, 392
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 2 cut(s) 89, 153
HapII CCGG 1 cut(s) 308
HgaI GACGC 1 cut(s) 65
HhaI GCGC 2 cut(s) 88, 152
Hin6I GCGC 2 cut(s) 86, 150
HinP1I GCGC 2 cut(s) 86, 150
HinfI GANTC 1 cut(s) 369
HpaII CCGG 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 283, 353
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 128, 190, 199
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 193, 196, 205, 208, 320
HspAI GCGC 2 cut(s) 86, 150
Kzo9I GATC 1 cut(s) 402
LguI GCTCTTC 2 cut(s) 66, 255
LmnI GCTCC 2 cut(s) 302, 388
LpnPI CCDG 9 cut(s) 7, 138, 169, 321, 359, 371, 380, 386, 398
Lsp1109I GCAGC 8 cut(s) 25, 139, 174, 183, 211, 220, 298, 403
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 359
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 6 cut(s) 83, 149, 242, 276, 284, 374
MfeI CAATTG 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 3 cut(s) 33, 66, 348
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 7 cut(s) 104, 124, 174, 177, 248, 279, 403
MseI TTAA 1 cut(s) 272
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 3 cut(s) 308, 374, 386
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 2 cut(s) 374, 386
MwoI GCNNNNNNNGC 6 cut(s) 184, 193, 196, 205, 208, 320
NciI CCSGG 1 cut(s) 308
NdeII GATC 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 427
NspV TTCGAA 1 cut(s) 253
PciSI GCTCTTC 2 cut(s) 66, 255
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PkrI GCNGC 8 cut(s) 40, 154, 189, 198, 201, 210, 313, 393
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 372, 384
PspGI CCWGG 2 cut(s) 372, 384
PspN4I GGNNCC 1 cut(s) 427
PstI CTGCAG 2 cut(s) 130, 201
PstNI CAGNNNCTG 1 cut(s) 400
SapI GCTCTTC 2 cut(s) 66, 255
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 8 cut(s) 39, 153, 188, 197, 200, 209, 312, 392
Sau3AI GATC 1 cut(s) 402
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 3 cut(s) 308, 374, 386
SduI GDGCHC 1 cut(s) 430
SetI ASST 1 cut(s) 96
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 2 cut(s) 126, 197
SfuI TTCGAA 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 3 cut(s) 33, 66, 348
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 306, 372, 384
StyI CCWWGG 1 cut(s) 421
TaqI TCGA 3 cut(s) 240, 253, 262
TasI AATT 3 cut(s) 33, 66, 348
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 405
TseI GCWGC 8 cut(s) 38, 152, 187, 196, 199, 208, 311, 391
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 1 cut(s) 405
XapI RAATTY 1 cut(s) 348
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.