AT2G13360

alanine glyoxylate aminotransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
5538740 .. 5541479
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G13360.1

Sequence Viewer

Length: 1206 bp
ATGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTAATCCGGGCGATGAACCGGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCGCTTACGAAAACATTGTTGGAGGATGTTAAGAAGATATTCAAGACCACATCAGGGACACCTTTTCTGTTTCCCACGACCGGGACTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGTTTCTGATTGGACAATTTAGCTTGCTCTGGATTGACCAGCAGAAGAGGCTTAATTTCAATGTTGATGTGGTTGAGAGTGATTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGCTCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTGCGCGCTTGATTTCCGAATGGATGAGTGGGGAGTGGACGTGGCCTTGACTGGGTCTCAGAAAGCCTTATCTCTTCCAACAGGACTTGGTATTGTCTGCGCCAGTCCTAAAGCTTTGGAAGCTACCAAAACTTCTAAATCTCTCAAAGTATTCTTTGACTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACCTATTGGCCATACACACCTTCCATTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAGGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACAGCAGTTATGGTGCCTCCGCATATAGACGGTTCGGAGATTGTGAGAAGGGCATGGCAGAGGTACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTATCTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAA

Protein Analysis

401

Amino Acids

44.21

Weight (kDa)

7.69

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 45 - 297 9.8e-23 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 937
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 2 cut(s) 446, 545
AciI CCGC 6 cut(s) 444, 478, 829, 863, 944, 1091
AcoI YGGCCR 1 cut(s) 740
AcuI CTGAAG 2 cut(s) 1130, 1154
AfaI GTAC 2 cut(s) 42, 989
AfiI CCNNNNNNNGG 5 cut(s) 177, 203, 204, 376, 591
AflII CTTAAG 2 cut(s) 713, 994
AflIII ACRYGT 1 cut(s) 237
AgeI ACCGGT 2 cut(s) 67, 105
AgsI TTSAA 3 cut(s) 166, 325, 761
AjiI CACGTC 1 cut(s) 580
AjnI CCWGG 4 cut(s) 19, 43, 247, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 7 cut(s) 288, 388, 653, 662, 727, 782, 1154
AluI AGCT 7 cut(s) 288, 388, 653, 662, 727, 782, 1154
Alw26I GTCTC 5 cut(s) 19, 246, 434, 600, 1016
Ama87I CYCGRG 1 cut(s) 1079
AoxI GGCC 4 cut(s) 378, 582, 740, 849
ApeKI GCWGC 4 cut(s) 514, 782, 1151, 1154
AsiGI ACCGGT 2 cut(s) 67, 105
Asp700I GAANNNNTTC 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 1051
AspLEI GCGC 4 cut(s) 127, 545, 547, 641
AspS9I GGNCC 2 cut(s) 17, 47
AsuC2I CCSGG 2 cut(s) 77, 205
AsuHPI GGTGA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 1079
AvaII GGWCC 2 cut(s) 17, 47
AvrII CCTAGG 1 cut(s) 1051
BalI TGGCCA 1 cut(s) 742
BanI GGYRCC 1 cut(s) 937
BbvI GCAGC 4 cut(s) 501, 769, 1141, 1163
BccI CCATC 3 cut(s) 39, 419, 545
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BciT130I CCWGG 4 cut(s) 21, 45, 249, 856
BciVI GTATCC 1 cut(s) 1115
BcnI CCSGG 2 cut(s) 77, 205
BcoDI GTCTC 5 cut(s) 19, 246, 434, 600, 1016
BfaI CTAG 4 cut(s) 518, 728, 1052, 1197
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 2 cut(s) 713, 994
BfuI GTATCC 1 cut(s) 1115
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 4 cut(s) 515, 783, 1152, 1155
BlnI CCTAGG 1 cut(s) 1051
BlsI GCNGC 4 cut(s) 516, 784, 1153, 1156
Bme1390I CCNGG 6 cut(s) 21, 45, 77, 205, 249, 856
Bme18I GGWCC 2 cut(s) 17, 47
BmeT110I CYCGRG 1 cut(s) 1079
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 17, 47
BmiI GGNNCC 3 cut(s) 66, 733, 939
BmrFI CCNGG 6 cut(s) 21, 45, 77, 205, 249, 856
BmrI ACTGGG 2 cut(s) 600, 1121
BmsI GCATC 1 cut(s) 511
BmuI ACTGGG 2 cut(s) 600, 1121
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 2 cut(s) 77, 205
BsaI GGTCTC 3 cut(s) 434, 600, 1016
BsaJI CCNNGG 2 cut(s) 20, 1051
BsaWI WCCGGW 5 cut(s) 61, 67, 87, 105, 449
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 564, 594
Bsc4I CCNNNNNNNGG 5 cut(s) 177, 203, 204, 376, 591
Bse118I RCCGGY 2 cut(s) 67, 105
Bse1I ACTGG 6 cut(s) 50, 214, 595, 642, 704, 1127
BseBI CCWGG 4 cut(s) 21, 45, 249, 856
BseDI CCNNGG 2 cut(s) 20, 1051
BseGI GGATG 4 cut(s) 154, 502, 568, 1120
BseLI CCNNNNNNNGG 5 cut(s) 177, 203, 204, 376, 591
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 6 cut(s) 50, 214, 595, 642, 704, 1127
BsePI GCGCGC 1 cut(s) 543
BseRI GAGGAG 1 cut(s) 476
BseXI GCAGC 4 cut(s) 501, 769, 1141, 1163
BsgI GTGCAG 1 cut(s) 874
Bsh1236I CGCG 2 cut(s) 446, 545
Bsh1285I CGRYCG 2 cut(s) 204, 450
BshFI GGCC 4 cut(s) 380, 584, 742, 851
BshNI GGYRCC 1 cut(s) 937
BshTI ACCGGT 2 cut(s) 67, 105
BsiEI CGRYCG 2 cut(s) 204, 450
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 9 cut(s) 62, 68, 76, 88, 106, 122, 204, 450, 506
BslFI GGGAC 3 cut(s) 193, 220, 366
BslI CCNNNNNNNGG 5 cut(s) 177, 203, 204, 376, 591
BsmAI GTCTC 5 cut(s) 19, 246, 434, 600, 1016
BsmFI GGGAC 3 cut(s) 193, 220, 366
BsnI GGCC 4 cut(s) 380, 584, 742, 851
Bso31I GGTCTC 3 cut(s) 434, 600, 1016
BsoBI CYCGRG 1 cut(s) 1079
Bsp143I GATC 2 cut(s) 490, 790
BspACI CCGC 6 cut(s) 444, 478, 829, 863, 944, 1091
BspANI GGCC 4 cut(s) 380, 584, 742, 851
BspCNI CTCAG 1 cut(s) 610
BspFNI CGCG 2 cut(s) 446, 545
BspLI GGNNCC 3 cut(s) 66, 733, 939
BspT107I GGYRCC 1 cut(s) 937
BspTI CTTAAG 2 cut(s) 713, 994
BspTNI GGTCTC 3 cut(s) 434, 600, 1016
BsrFI RCCGGY 2 cut(s) 67, 105
BsrI ACTGG 6 cut(s) 50, 214, 595, 642, 704, 1127
BssAI RCCGGY 2 cut(s) 67, 105
BssECI CCNNGG 2 cut(s) 20, 1051
BssHII GCGCGC 1 cut(s) 543
BssMI GATC 2 cut(s) 490, 790
BssT1I CCWWGG 1 cut(s) 1051
Bst2UI CCWGG 4 cut(s) 21, 45, 249, 856
Bst4CI ACNGT 4 cut(s) 527, 773, 922, 956
Bst6I CTCTTC 2 cut(s) 305, 618
BstAFI CTTAAG 2 cut(s) 713, 994
BstC8I GCNNGC 4 cut(s) 290, 545, 829, 861
BstDEI CTNAG 2 cut(s) 597, 776
BstEII GGTNACC 1 cut(s) 108
BstF5I GGATG 4 cut(s) 154, 502, 568, 1120
BstFNI CGCG 2 cut(s) 446, 545
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 4 cut(s) 127, 545, 547, 641
BstKTI GATC 2 cut(s) 493, 793
BstMAI GTCTC 5 cut(s) 19, 246, 434, 600, 1016
BstMBI GATC 2 cut(s) 490, 790
BstMCI CGRYCG 2 cut(s) 204, 450
BstMWI GCNNNNNNNGC 5 cut(s) 122, 313, 659, 833, 869
BstNI CCWGG 4 cut(s) 21, 45, 249, 856
BstPI GGTNACC 1 cut(s) 108
BstSCI CCNGG 6 cut(s) 19, 43, 75, 203, 247, 854
BstUI CGCG 2 cut(s) 446, 545
BstV1I GCAGC 4 cut(s) 501, 769, 1141, 1163
BsuI GTATCC 1 cut(s) 1115
BsuRI GGCC 4 cut(s) 380, 584, 742, 851
BtgZI GCGATG 2 cut(s) 95, 808
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 4 cut(s) 154, 502, 568, 1120
BtsIMutI CAGTG 2 cut(s) 57, 927
Cac8I GCNNGC 4 cut(s) 290, 545, 829, 861
CfoI GCGC 4 cut(s) 127, 545, 547, 641
Cfr10I RCCGGY 2 cut(s) 67, 105
Cfr13I GGNCC 2 cut(s) 17, 47
Csp6I GTAC 2 cut(s) 41, 988
CspAI ACCGGT 2 cut(s) 67, 105
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CviAII CATG 3 cut(s) 833, 873, 978
CviQI GTAC 2 cut(s) 41, 988
DdeI CTNAG 2 cut(s) 597, 776
DpnI GATC 2 cut(s) 492, 792
DpnII GATC 2 cut(s) 490, 790
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 2 cut(s) 305, 618
EarI CTCTTC 2 cut(s) 305, 618
Eco130I CCWWGG 1 cut(s) 1051
Eco31I GGTCTC 3 cut(s) 434, 600, 1016
Eco47I GGWCC 2 cut(s) 17, 47
Eco57I CTGAAG 2 cut(s) 1130, 1154
Eco88I CYCGRG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 108
EcoRII CCWGG 4 cut(s) 19, 43, 247, 854
EcoT14I CCWWGG 1 cut(s) 1051
ErhI CCWWGG 1 cut(s) 1051
FaeI CATG 3 cut(s) 836, 876, 981
FaqI GGGAC 3 cut(s) 193, 220, 366
FatI CATG 3 cut(s) 832, 872, 977
FauI CCCGC 2 cut(s) 836, 1084
Fnu4HI GCNGC 4 cut(s) 515, 783, 1152, 1155
FokI GGATG 4 cut(s) 161, 489, 575, 1127
Fsp4HI GCNGC 4 cut(s) 515, 783, 1152, 1155
FspBI CTAG 4 cut(s) 518, 728, 1052, 1197
GlaI GCGC 4 cut(s) 126, 544, 546, 640
GluI GCNGC 4 cut(s) 515, 783, 1152, 1155
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 4 cut(s) 380, 584, 742, 851
HapII CCGG 9 cut(s) 62, 68, 76, 88, 106, 122, 204, 450, 506
HhaI GCGC 4 cut(s) 127, 545, 547, 641
Hin1II CATG 3 cut(s) 836, 876, 981
Hin6I GCGC 4 cut(s) 125, 543, 545, 639
HinP1I GCGC 4 cut(s) 125, 543, 545, 639
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 2 cut(s) 403, 1200
HpaII CCGG 9 cut(s) 62, 68, 76, 88, 106, 122, 204, 450, 506
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 4 cut(s) 55, 433, 523, 577
Hpy188I TCNGA 5 cut(s) 273, 557, 600, 961, 1040
Hpy188III TCNNGA 4 cut(s) 166, 295, 788, 1197
Hpy8I GTNNAC 4 cut(s) 55, 433, 523, 577
HpyAV CCTTC 5 cut(s) 762, 800, 892, 966, 1105
HpyCH4III ACNGT 4 cut(s) 527, 773, 922, 956
HpyCH4IV ACGT 2 cut(s) 239, 579
HpyCH4V TGCA 4 cut(s) 426, 891, 1072, 1151
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 313, 659, 833, 869
HpyF3I CTNAG 2 cut(s) 597, 776
HpySE526I ACGT 2 cut(s) 239, 579
Hsp92II CATG 3 cut(s) 836, 876, 981
HspAI GCGC 4 cut(s) 125, 543, 545, 639
Kzo9I GATC 2 cut(s) 490, 790
Lsp1109I GCAGC 4 cut(s) 501, 769, 1141, 1163
LweI GCATC 1 cut(s) 511
MaeI CTAG 4 cut(s) 518, 728, 1052, 1197
MaeII ACGT 2 cut(s) 239, 579
MaeIII GTNAC 4 cut(s) 108, 454, 914, 922
MalI GATC 2 cut(s) 492, 792
MboI GATC 2 cut(s) 490, 790
MboII GAAGA 4 cut(s) 169, 322, 605, 1160
MlsI TGGCCA 1 cut(s) 742
MluCI AATT 3 cut(s) 281, 319, 1041
MluNI TGGCCA 1 cut(s) 742
MmeI TCCRAC 3 cut(s) 123, 641, 1099
Mox20I TGGCCA 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 742
MseI TTAA 4 cut(s) 153, 318, 714, 995
Msp20I TGGCCA 1 cut(s) 742
MspA1I CMGCKG 1 cut(s) 1154
MspCI CTTAAG 2 cut(s) 713, 994
MspI CCGG 9 cut(s) 62, 68, 76, 88, 106, 122, 204, 450, 506
MspR9I CCNGG 6 cut(s) 21, 45, 77, 205, 249, 856
MvaI CCWGG 4 cut(s) 21, 45, 249, 856
MvnI CGCG 2 cut(s) 446, 545
MwoI GCNNNNNNNGC 5 cut(s) 122, 313, 659, 833, 869
NciI CCSGG 2 cut(s) 77, 205
NdeII GATC 2 cut(s) 490, 790
NlaIII CATG 3 cut(s) 836, 876, 981
NlaIV GGNNCC 3 cut(s) 66, 733, 939
NmuCI GTSAC 2 cut(s) 108, 922
PauI GCGCGC 1 cut(s) 543
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 403, 1200
PflFI GACNNNGTC 1 cut(s) 592
PflMI CCANNNNNTGG 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 247
PinAI ACCGGT 2 cut(s) 67, 105
PkrI GCNGC 4 cut(s) 516, 784, 1153, 1156
Psp6I CCWGG 4 cut(s) 19, 43, 247, 854
PspEI GGTNACC 1 cut(s) 108
PspGI CCWGG 4 cut(s) 19, 43, 247, 854
PspN4I GGNNCC 3 cut(s) 66, 733, 939
PspPI GGNCC 2 cut(s) 17, 47
PsyI GACNNNGTC 1 cut(s) 592
PteI GCGCGC 1 cut(s) 543
PvuII CAGCTG 1 cut(s) 1154
RsaI GTAC 2 cut(s) 42, 989
RsaNI GTAC 2 cut(s) 41, 988
SaqAI TTAA 4 cut(s) 153, 318, 714, 995
SatI GCNGC 4 cut(s) 515, 783, 1152, 1155
Sau3AI GATC 2 cut(s) 490, 790
Sau96I GGNCC 2 cut(s) 17, 47
ScrFI CCNGG 6 cut(s) 21, 45, 77, 205, 249, 856
SfaNI GCATC 1 cut(s) 511
SinI GGWCC 2 cut(s) 17, 47
SmlI CTYRAG 3 cut(s) 713, 812, 994
SmoI CTYRAG 3 cut(s) 713, 812, 994
Sse9I AATT 3 cut(s) 281, 319, 1041
SsiI CCGC 6 cut(s) 444, 478, 829, 863, 944, 1091
SspMI CTAG 4 cut(s) 518, 728, 1052, 1197
StyD4I CCNGG 6 cut(s) 19, 43, 75, 203, 247, 854
StyI CCWWGG 1 cut(s) 1051
TaaI ACNGT 4 cut(s) 527, 773, 922, 956
TaiI ACGT 2 cut(s) 242, 582
TaqI TCGA 1 cut(s) 489
TasI AATT 3 cut(s) 281, 319, 1041
TfiI GAWTC 2 cut(s) 403, 1200
Tru1I TTAA 4 cut(s) 153, 318, 714, 995
Tru9I TTAA 4 cut(s) 153, 318, 714, 995
TscAI CASTG 2 cut(s) 57, 927
TseFI GTSAC 2 cut(s) 108, 922
TseI GCWGC 4 cut(s) 514, 782, 1151, 1154
Tsp45I GTSAC 2 cut(s) 108, 922
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 2 cut(s) 57, 927
Tth111I GACNNNGTC 1 cut(s) 592
Van91I CCANNNNNTGG 1 cut(s) 376
Vha464I CTTAAG 2 cut(s) 713, 994
VpaK11BI GGWCC 2 cut(s) 17, 47
XbaI TCTAGA 1 cut(s) 1196
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XmaJI CCTAGG 1 cut(s) 1051
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 4 cut(s) 518, 728, 1052, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.