MD03G1168700.v1.1

Serine--glyoxylate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
22808416 .. 22812549
4134 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1168700.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGGACTACGTTTATGGACCAGGAAGGAACCACCTCTTTGTTCCAGGCCCGGTCAATATTCCGGAGCCAGTCCTTCGGGCCATGAACAGGAACAATGAGGATTACCGTTCTCCCGCTGTCCCAGCAATGACCAAAACTCTGCTCGAGGATGTGAAGAAGATTTTCAAGACTACATCTGGAACTCCATTTATGATCCCTACCACAGGCACTGGTGCATGGGAGAGTGCACTTACAAACACATTATCTCCTGGAGACCGGATTGTATCTTTCCTGATTGGCCAATTCAGTTTACTGTGGATCGATCAGCAGCAGCGCCTTAAGTTCAATGTGGATGTTGTAGAAAGTGATTGGGGCCAAGGTGCTAACCTTGACGTTCTGGAATCAAAAATTGCAGAAGATACAGCGCACACTATAAAGGCAATATGCATTGTTCACAATGAAACAGCCACCGGAGTCACAAACAACTTGGCTAAAGTCAGAAAAATACTTGATAACTACATGCATCCGGCTCTCTTCCTTGTCGATGGAGTGTCTTCCATATGTGCCCTTGATTTCCGTATGGACGAGTGGGGGGTAGATGTTGCTTTAACTGGCTCTCAGAAAGCTCTTTCCCTCCCCACTGGAATTGGGATTGTGTGTGCAAGCCCCAAGGCTCTGGAGGCATCTAAAAGTGCAAAATCCGTGAGGGTGTTCTTCGACTGGAATGACTACTTGAAGTTCTATAAGTTGGGAACATACTGGCCATACACCCCTTCCATCCAGTTGCTGTATGGGCTGCGTACAGCACTTGATCTTCTTTTTGAGGAAGGACTTGACAATGTGATTGCAAGACATAGCCGTTTGGGCAAAGCAACAAGGCTTGCTGTGGAGGCATGGGGGTTGAAGAACTGCACCCAAAGCGAGGAATGGGTGAGTGACACAGTGACTGCTGTTCTTGTTCCTCCATACATTGACAGTACCGAAATTGTGAAAAGGGCATGGAAAAGGTACAATTTGAGCTTAGGCCTAGGCCTGAACAAAATAGCCGGCAAGGTTTTCAGAATAGGGCATCTTGGCAACCTGAATGAGTTGCAACTGTTGGGTTGTCTTGCTGGTGTGGAGATGGTGCTTAAGGATGTCGGATACCCTGTTAAGCTCGGAAGCGGAGTTGCAGCAGCCAGTGCATACTTCCAGAACAATACCCCTCTGATCCCTTCCAGGATTTGA

Protein Analysis

402

Amino Acids

44.12

Weight (kDa)

7.62

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 46 - 291 3.2e-22 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 2 cut(s) 114, 1143
AclWI GGATC 3 cut(s) 187, 305, 1183
AcoI YGGCCR 2 cut(s) 277, 740
AfaI GTAC 3 cut(s) 781, 958, 989
AfiI CCNNNNNNNGG 3 cut(s) 87, 203, 901
AflII CTTAAG 2 cut(s) 317, 1109
AgsI TTSAA 4 cut(s) 166, 325, 715, 883
AjnI CCWGG 4 cut(s) 19, 43, 247, 1196
AluBI AGCT 3 cut(s) 605, 999, 1135
AluI AGCT 3 cut(s) 605, 999, 1135
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 225
AlwI GGATC 3 cut(s) 187, 305, 1183
AlwNI CAGNNNCTG 3 cut(s) 209, 766, 926
Ama87I CYCGRG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 7 cut(s) 46, 78, 277, 352, 740, 1003, 1009
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 5 cut(s) 307, 310, 775, 1151, 1154
Asp700I GAANNNNTTC 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 1006
AspLEI GCGC 2 cut(s) 315, 406
AspS9I GGNCC 4 cut(s) 17, 47, 78, 352
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 922
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 1006
BaeGI GKGCMC 2 cut(s) 229, 547
BalI TGGCCA 2 cut(s) 279, 742
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 5 cut(s) 319, 322, 762, 1163, 1166
BccI CCATC 3 cut(s) 518, 764, 1096
BceAI ACGGC 1 cut(s) 822
BciT130I CCWGG 4 cut(s) 21, 45, 249, 1198
BciVI GTATCC 1 cut(s) 1115
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 1007
BfoI RGCGCY 1 cut(s) 316
BfrI CTTAAG 2 cut(s) 317, 1109
BfuI GTATCC 1 cut(s) 1115
BglI GCCNNNNNGGC 1 cut(s) 843
BisI GCNGC 5 cut(s) 308, 311, 776, 1152, 1155
BlnI CCTAGG 1 cut(s) 1006
BlsI GCNGC 5 cut(s) 309, 312, 777, 1153, 1156
Bme1390I CCNGG 5 cut(s) 21, 45, 50, 249, 1198
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 4 cut(s) 17, 47, 78, 352
BmiI GGNNCC 3 cut(s) 29, 66, 353
BmrFI CCNGG 5 cut(s) 21, 45, 50, 249, 1198
BmsI GCATC 3 cut(s) 511, 671, 1057
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 270, 677
Bpu10I CCTNAGC 1 cut(s) 1000
BpuMI CCSGG 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 355, 648, 1006
BsaWI WCCGGW 3 cut(s) 61, 255, 449
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 203, 901
Bse118I RCCGGY 1 cut(s) 1025
Bse1I ACTGG 8 cut(s) 68, 214, 595, 625, 704, 743, 760, 1158
Bse3DI GCAATG 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 4 cut(s) 21, 45, 249, 1198
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 355, 648, 1006
BseGI GGATG 5 cut(s) 154, 337, 502, 756, 1120
BseLI CCNNNNNNNGG 3 cut(s) 87, 203, 901
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 8 cut(s) 68, 214, 595, 625, 704, 743, 760, 1158
BseSI GKGCMC 2 cut(s) 229, 547
BseXI GCAGC 5 cut(s) 319, 322, 762, 1163, 1166
BseYI CCCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 874
BshFI GGCC 7 cut(s) 48, 80, 279, 354, 742, 1005, 1011
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 6 cut(s) 50, 62, 256, 450, 506, 1026
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 87, 203, 901
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 7 cut(s) 48, 80, 279, 354, 742, 1005, 1011
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 229, 547
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 5 cut(s) 192, 297, 301, 790, 1188
BspACI CCGC 2 cut(s) 114, 1143
BspANI GGCC 7 cut(s) 48, 80, 279, 354, 742, 1005, 1011
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 29, 66, 353
BspPI GGATC 3 cut(s) 187, 305, 1183
BspTI CTTAAG 2 cut(s) 317, 1109
BspTNI GGTCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 1025
BsrI ACTGG 8 cut(s) 68, 214, 595, 625, 704, 743, 760, 1158
BssAI RCCGGY 1 cut(s) 1025
BssECI CCNNGG 3 cut(s) 355, 648, 1006
BssMI GATC 5 cut(s) 192, 297, 301, 790, 1188
BssT1I CCWWGG 3 cut(s) 355, 648, 1006
Bst2UI CCWGG 4 cut(s) 21, 45, 249, 1198
Bst4CI ACNGT 5 cut(s) 107, 294, 922, 956, 1077
Bst6I CTCTTC 1 cut(s) 518
BstAFI CTTAAG 2 cut(s) 317, 1109
BstAPI GCANNNNNTGC 1 cut(s) 1160
BstC8I GCNNGC 3 cut(s) 643, 861, 1027
BstDEI CTNAG 2 cut(s) 597, 1000
BstENI CCTNNNNNAGG 1 cut(s) 201
BstF5I GGATG 5 cut(s) 154, 337, 502, 756, 1120
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 2 cut(s) 315, 406
BstKTI GATC 5 cut(s) 195, 300, 304, 793, 1191
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 5 cut(s) 192, 297, 301, 790, 1188
BstMWI GCNNNNNNNGC 7 cut(s) 122, 659, 772, 843, 869, 897, 1160
BstNI CCWGG 4 cut(s) 21, 45, 249, 1198
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 5 cut(s) 19, 43, 48, 247, 1196
BstSLI GKGCMC 2 cut(s) 229, 547
BstV1I GCAGC 5 cut(s) 319, 322, 762, 1163, 1166
BstV2I GAAGAC 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 655
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 1 cut(s) 1115
BsuRI GGCC 7 cut(s) 48, 80, 279, 354, 742, 1005, 1011
BsuTUI ATCGAT 1 cut(s) 300
BtsCI GGATG 5 cut(s) 154, 337, 502, 756, 1120
BtsIMutI CAGTG 4 cut(s) 207, 618, 927, 1165
Cac8I GCNNGC 3 cut(s) 643, 861, 1027
CaiI CAGNNNCTG 3 cut(s) 209, 766, 926
CfoI GCGC 2 cut(s) 315, 406
Cfr10I RCCGGY 1 cut(s) 1025
Cfr13I GGNCC 4 cut(s) 17, 47, 78, 352
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 3 cut(s) 780, 957, 988
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviAII CATG 5 cut(s) 82, 216, 499, 873, 978
CviQI GTAC 3 cut(s) 780, 957, 988
DdeI CTNAG 2 cut(s) 597, 1000
DpnI GATC 5 cut(s) 194, 299, 303, 792, 1190
DpnII GATC 5 cut(s) 192, 297, 301, 790, 1188
EaeI YGGCCR 2 cut(s) 277, 740
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco130I CCWWGG 3 cut(s) 355, 648, 1006
Eco147I AGGCCT 2 cut(s) 1005, 1011
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 143
EcoNI CCTNNNNNAGG 1 cut(s) 201
EcoRII CCWGG 4 cut(s) 19, 43, 247, 1196
EcoT14I CCWWGG 3 cut(s) 355, 648, 1006
EcoT22I ATGCAT 2 cut(s) 428, 504
ErhI CCWWGG 3 cut(s) 355, 648, 1006
FaeI CATG 5 cut(s) 85, 219, 502, 876, 981
FaqI GGGAC 1 cut(s) 104
FatI CATG 5 cut(s) 81, 215, 498, 872, 977
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 539
Fnu4HI GCNGC 5 cut(s) 308, 311, 776, 1152, 1155
FokI GGATG 5 cut(s) 161, 344, 489, 743, 1127
Fsp4HI GCNGC 5 cut(s) 308, 311, 776, 1152, 1155
FspBI CTAG 1 cut(s) 1007
GlaI GCGC 2 cut(s) 314, 405
GluI GCNGC 5 cut(s) 308, 311, 776, 1152, 1155
GsaI CCCAGC 1 cut(s) 125
GsuI CTGGAG 2 cut(s) 270, 677
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 7 cut(s) 48, 80, 279, 354, 742, 1005, 1011
HapII CCGG 6 cut(s) 50, 62, 256, 450, 506, 1026
HhaI GCGC 2 cut(s) 315, 406
Hin1II CATG 5 cut(s) 85, 219, 502, 876, 981
Hin6I GCGC 2 cut(s) 313, 404
HinP1I GCGC 2 cut(s) 313, 404
HinfI GANTC 2 cut(s) 380, 453
HpaII CCGG 6 cut(s) 50, 62, 256, 450, 506, 1026
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 3 cut(s) 227, 290, 433
Hpy188I TCNGA 6 cut(s) 479, 600, 1040, 1121, 1139, 1188
Hpy188III TCNNGA 7 cut(s) 62, 166, 177, 271, 377, 656, 1171
Hpy8I GTNNAC 3 cut(s) 227, 290, 433
HpyAV CCTTC 5 cut(s) 18, 83, 762, 800, 1203
HpyCH4III ACNGT 5 cut(s) 107, 294, 922, 956, 1077
HpyCH4IV ACGT 2 cut(s) 9, 372
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 659, 772, 843, 869, 897, 1160
HpyF3I CTNAG 2 cut(s) 597, 1000
HpySE526I ACGT 2 cut(s) 9, 372
Hsp92II CATG 5 cut(s) 85, 219, 502, 876, 981
HspAI GCGC 2 cut(s) 313, 404
Kpn2I TCCGGA 1 cut(s) 61
KroI GCCGGC 1 cut(s) 1025
KroNI GCCGGC 1 cut(s) 1027
Kzo9I GATC 5 cut(s) 192, 297, 301, 790, 1188
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 5 cut(s) 319, 322, 762, 1163, 1166
LweI GCATC 3 cut(s) 511, 671, 1057
MaeI CTAG 1 cut(s) 1007
MaeII ACGT 2 cut(s) 9, 372
MaeIII GTNAC 3 cut(s) 454, 914, 922
MalI GATC 5 cut(s) 194, 299, 303, 792, 1190
MboI GATC 5 cut(s) 192, 297, 301, 790, 1188
MboII GAAGA 8 cut(s) 166, 169, 407, 505, 525, 685, 785, 895
MhlI GDGCHC 2 cut(s) 229, 547
MlsI TGGCCA 2 cut(s) 279, 742
MluCI AATT 5 cut(s) 281, 387, 624, 963, 991
MluNI TGGCCA 2 cut(s) 279, 742
MlyI GAGTC 1 cut(s) 462
MmeI TCCRAC 1 cut(s) 1099
Mox20I TGGCCA 2 cut(s) 279, 742
Mph1103I ATGCAT 2 cut(s) 428, 504
MroI TCCGGA 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 1025
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 2 cut(s) 279, 742
MseI TTAA 4 cut(s) 318, 587, 1110, 1131
Msp20I TGGCCA 2 cut(s) 279, 742
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 2 cut(s) 317, 1109
MspI CCGG 6 cut(s) 50, 62, 256, 450, 506, 1026
MspR9I CCNGG 5 cut(s) 21, 45, 50, 249, 1198
MvaI CCWGG 4 cut(s) 21, 45, 249, 1198
MwoI GCNNNNNNNGC 7 cut(s) 122, 659, 772, 843, 869, 897, 1160
NaeI GCCGGC 1 cut(s) 1027
NciI CCSGG 1 cut(s) 50
NdeI CATATG 1 cut(s) 539
NdeII GATC 5 cut(s) 192, 297, 301, 790, 1188
NgoMIV GCCGGC 1 cut(s) 1025
NlaIII CATG 5 cut(s) 85, 219, 502, 876, 981
NlaIV GGNNCC 3 cut(s) 29, 66, 353
NmuCI GTSAC 3 cut(s) 454, 914, 922
NsiI ATGCAT 2 cut(s) 428, 504
NspI RCATGY 1 cut(s) 502
PaeR7I CTCGAG 1 cut(s) 143
PceI AGGCCT 2 cut(s) 1005, 1011
PdiI GCCGGC 1 cut(s) 1027
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 380
PfoI TCCNGGA 2 cut(s) 247, 1196
PkrI GCNGC 5 cut(s) 309, 312, 777, 1153, 1156
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Psp6I CCWGG 4 cut(s) 19, 43, 247, 1196
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 4 cut(s) 19, 43, 247, 1196
PspN4I GGNNCC 3 cut(s) 29, 66, 353
PspPI GGNCC 4 cut(s) 17, 47, 78, 352
PspXI VCTCGAGB 1 cut(s) 143
PstNI CAGNNNCTG 3 cut(s) 209, 766, 926
RsaI GTAC 3 cut(s) 781, 958, 989
RsaNI GTAC 3 cut(s) 780, 957, 988
SaqAI TTAA 4 cut(s) 318, 587, 1110, 1131
SatI GCNGC 5 cut(s) 308, 311, 776, 1152, 1155
Sau3AI GATC 5 cut(s) 192, 297, 301, 790, 1188
Sau96I GGNCC 4 cut(s) 17, 47, 78, 352
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 5 cut(s) 21, 45, 50, 249, 1198
SduI GDGCHC 2 cut(s) 229, 547
SfaNI GCATC 3 cut(s) 511, 671, 1057
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 3 cut(s) 143, 317, 1109
SmoI CTYRAG 3 cut(s) 143, 317, 1109
Sse9I AATT 5 cut(s) 281, 387, 624, 963, 991
SseBI AGGCCT 2 cut(s) 1005, 1011
SsiI CCGC 2 cut(s) 114, 1143
SspI AATATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 1007
StuI AGGCCT 2 cut(s) 1005, 1011
StyD4I CCNGG 5 cut(s) 19, 43, 48, 247, 1196
StyI CCWWGG 3 cut(s) 355, 648, 1006
TaaI ACNGT 5 cut(s) 107, 294, 922, 956, 1077
TaiI ACGT 2 cut(s) 12, 375
TaqI TCGA 4 cut(s) 144, 300, 522, 696
TasI AATT 5 cut(s) 281, 387, 624, 963, 991
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 4 cut(s) 318, 587, 1110, 1131
Tru9I TTAA 4 cut(s) 318, 587, 1110, 1131
TscAI CASTG 4 cut(s) 214, 625, 927, 1165
TseFI GTSAC 3 cut(s) 454, 914, 922
TseI GCWGC 5 cut(s) 307, 310, 775, 1151, 1154
Tsp45I GTSAC 3 cut(s) 454, 914, 922
TspDTI ATGAA 2 cut(s) 98, 453
TspGWI ACGGA 2 cut(s) 545, 670
TspRI CASTG 4 cut(s) 214, 625, 927, 1165
Vha464I CTTAAG 2 cut(s) 317, 1109
VneI GTGCAC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 201
XceI RCATGY 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XhoI CTCGAG 1 cut(s) 143
XmaJI CCTAGG 1 cut(s) 1006
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 1 cut(s) 1007
Zsp2I ATGCAT 2 cut(s) 428, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.