Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Reverse (-)

903990 .. 908121

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGACAATGTTTACGCACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCAACCAATATCCCGGAACTCGTCCTTCGGGCAATGAACAGAAACAATGAGGACTATGGTTCTCTAGCTGTTTCTGCAATGACAAAAGTCCTGCTCGAGGATGTCAAGAAGATTTTCAAGACTACTACCAGAACTCTATTTATGATCTCTACCACAGATCGGATTGTATCTTTCCTGATTGGCCAATTCAGTTTGCTGTGGATTGATCAACGGCAGCGCGTTAATTTCAATATCGATGTTGTGGAAAGTGAATGGGGCCAAGGTGCCAACCTTGACATTCTGGCATCAAAAAGTGTCGATGCCACTGCACACACTATAAAGGCAGTATTGAGAAAAAAACTTGACCACTACAGGCATCCGGCTTTCTTTCTTGTTGATGGAATGTCTTCCATATGTGCTCTGGATTTCCGTATAGATGAATGGGGAGTAGATGTAGCCTTAACTGGCTCCCAGAAAGCTCTTTCCCTTCCCACTGGCATAGGGATTGTGTGTGCAAGCCCCAAAGCTCTTTCCTGCCCATTTGGTACTACTTCAACTCCTAATCCTGGATATGTGTTGAATAATGGTATTGGTAATGATATTCTTGCTGGAACTTTTTCTGCTCAAGATCAAGCATATAATCAACATTCCATGCTTACCAGAGCCCAAAATGAAATTAGAGGGTGTACAAGGGGTATCCGATTGGATACAAGGCTCGGGTTGGGTATAAACTTGAGTGCTCTAATGACTTCAAAGATTGAAGTAGTGATGCGGAGCTCTCCACCAAAGTCGGGAGGGGGAGATTGTTGGGTTCCCTCCTCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

284

Amino Acids

30.97

Weight (kDa)

8.52

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	134 - 186	3.3e-06	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	799
AcoI	YGGCCR	1 cut(s)	229
AfaI	GTAC	2 cut(s)	574, 715
AfiI	CCNNNNNNNGG	4 cut(s)	145, 207, 593, 818
AgsI	TTSAA	6 cut(s)	166, 277, 582, 607, 780, 788
AjnI	CCWGG	3 cut(s)	19, 43, 592
AluBI	AGCT	4 cut(s)	116, 506, 554, 804
AluI	AGCT	4 cut(s)	116, 506, 554, 804
Alw21I	GWGCWC	3 cut(s)	448, 769, 806
Ama87I	CYCGRG	2 cut(s)	143, 743
AoxI	GGCC	3 cut(s)	47, 229, 304
ApeKI	GCWGC	1 cut(s)	262
Asp700I	GAANNNNTTC	3 cut(s)	161, 433, 643
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	47, 304
AsuC2I	CCSGG	1 cut(s)	62
AvaI	CYCGRG	2 cut(s)	143, 743
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	694, 806
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	3 cut(s)	448, 769, 806
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	39, 419
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	3 cut(s)	21, 45, 594
BciVI	GTATCC	2 cut(s)	727, 734
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	62
BfaI	CTAG	2 cut(s)	113, 853
BfmI	CTRYAG	1 cut(s)	397
BfuI	GTATCC	2 cut(s)	727, 734
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	21, 45, 62, 594
BmeT110I	CYCGRG	2 cut(s)	143, 743
BmgT120I	GGNCC	2 cut(s)	47, 304
BmiI	GGNNCC	5 cut(s)	29, 305, 313, 496, 840
BmrFI	CCNGG	4 cut(s)	21, 45, 62, 594
BmsI	GCATC	4 cut(s)	337, 341, 412, 786
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	636, 781
BpuMI	CCSGG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	44, 307
BsaXI	ACNNNNNCTCC	4 cut(s)	465, 495, 568, 598
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 207, 593, 818
Bse1I	ACTGG	2 cut(s)	496, 526
Bse3DI	GCAATG	2 cut(s)	87, 132
BseBI	CCWGG	3 cut(s)	21, 45, 594
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	44, 307
BseGI	GGATG	2 cut(s)	154, 403
BseLI	CCNNNNNNNGG	4 cut(s)	145, 207, 593, 818
BseMI	GCAATG	2 cut(s)	87, 132
BseNI	ACTGG	2 cut(s)	496, 526
BseRI	GAGGAG	1 cut(s)	835
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	49, 231, 306
BshNI	GGYRCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	3 cut(s)	448, 769, 806
BsiHKCI	CYCGRG	2 cut(s)	143, 743
BsiSI	CCGG	2 cut(s)	62, 407
BslI	CCNNNNNNNGG	4 cut(s)	145, 207, 593, 818
BsnI	GGCC	3 cut(s)	49, 231, 306
BsoBI	CYCGRG	2 cut(s)	143, 743
Bsp1286I	GDGCHC	4 cut(s)	448, 694, 769, 806
Bsp1407I	TGTACA	1 cut(s)	713
Bsp143I	GATC	4 cut(s)	192, 205, 253, 655
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	3 cut(s)	49, 231, 306
BspDI	ATCGAT	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	5 cut(s)	29, 305, 313, 496, 840
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	87, 132
BsrGI	TGTACA	1 cut(s)	713
BsrI	ACTGG	2 cut(s)	496, 526
BssECI	CCNNGG	2 cut(s)	44, 307
BssMI	GATC	4 cut(s)	192, 205, 253, 655
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	3 cut(s)	21, 45, 594
BstAUI	TGTACA	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	154, 403
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	4 cut(s)	195, 208, 256, 658
BstMBI	GATC	4 cut(s)	192, 205, 253, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	3 cut(s)	21, 45, 594
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	4 cut(s)	19, 43, 60, 592
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	282
BsuI	GTATCC	2 cut(s)	727, 734
BsuRI	GGCC	3 cut(s)	49, 231, 306
BsuTUI	ATCGAT	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	154, 403
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 519
Cac8I	GCNNGC	1 cut(s)	544
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	47, 304
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	573, 714
CviAII	CATG	2 cut(s)	679, 849
CviQI	GTAC	2 cut(s)	573, 714
DpnI	GATC	4 cut(s)	194, 207, 255, 657
DpnII	GATC	4 cut(s)	192, 205, 253, 655
EaeI	YGGCCR	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	694, 806
Eco53kI	GAGCTC	1 cut(s)	804
Eco88I	CYCGRG	2 cut(s)	143, 743
EcoICRI	GAGCTC	1 cut(s)	804
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	19, 43, 592
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	2 cut(s)	694, 806
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	2 cut(s)	682, 852
FatI	CATG	2 cut(s)	678, 848
FauNDI	CATATG	1 cut(s)	440
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	2 cut(s)	161, 390
FriOI	GRGCYC	2 cut(s)	694, 806
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	113, 853
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	49, 231, 306
HapII	CCGG	2 cut(s)	62, 407
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	682, 852
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	62, 407
Hpy166II	GTNNAC	2 cut(s)	13, 714
Hpy188I	TCNGA	2 cut(s)	210, 728
Hpy188III	TCNNGA	6 cut(s)	154, 166, 223, 449, 653, 819
Hpy8I	GTNNAC	2 cut(s)	13, 714
HpyAV	CCTTC	3 cut(s)	18, 83, 524
HpyCH4V	TGCA	3 cut(s)	125, 356, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	682, 852
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	192, 205, 253, 655
LmnI	GCTCC	2 cut(s)	500, 801
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	4 cut(s)	337, 341, 412, 786
MaeI	CTAG	2 cut(s)	113, 853
MalI	GATC	4 cut(s)	194, 207, 255, 657
MboI	GATC	4 cut(s)	192, 205, 253, 655
MboII	GAAGA	2 cut(s)	169, 426
MhlI	GDGCHC	4 cut(s)	448, 694, 769, 806
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	3 cut(s)	233, 271, 702
MluNI	TGGCCA	1 cut(s)	231
MnlI	CCTC	5 cut(s)	91, 139, 701, 815, 853
Mox20I	TGGCCA	1 cut(s)	231
MroXI	GAANNNNTTC	3 cut(s)	161, 433, 643
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	270, 488
Msp20I	TGGCCA	1 cut(s)	231
MspI	CCGG	2 cut(s)	62, 407
MspR9I	CCNGG	4 cut(s)	21, 45, 62, 594
MvaI	CCWGG	3 cut(s)	21, 45, 594
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	440
NdeII	GATC	4 cut(s)	192, 205, 253, 655
NlaIII	CATG	2 cut(s)	682, 852
NlaIV	GGNNCC	5 cut(s)	29, 305, 313, 496, 840
PaeR7I	CTCGAG	1 cut(s)	143
PdmI	GAANNNNTTC	3 cut(s)	161, 433, 643
PfoI	TCCNGGA	2 cut(s)	60, 592
PkrI	GCNGC	1 cut(s)	264
PshAI	GACNNNNGTC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	806
Psp6I	CCWGG	3 cut(s)	19, 43, 592
PspGI	CCWGG	3 cut(s)	19, 43, 592
PspN4I	GGNNCC	5 cut(s)	29, 305, 313, 496, 840
PspPI	GGNCC	2 cut(s)	47, 304
PspXI	VCTCGAGB	1 cut(s)	143
RsaI	GTAC	2 cut(s)	574, 715
RsaNI	GTAC	2 cut(s)	573, 714
SacI	GAGCTC	1 cut(s)	806
SaqAI	TTAA	2 cut(s)	270, 488
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	4 cut(s)	192, 205, 253, 655
Sau96I	GGNCC	2 cut(s)	47, 304
ScrFI	CCNGG	4 cut(s)	21, 45, 62, 594
SduI	GDGCHC	4 cut(s)	448, 694, 769, 806
SetI	ASST	6 cut(s)	118, 313, 321, 508, 556, 806
SfaNI	GCATC	4 cut(s)	337, 341, 412, 786
SfcI	CTRYAG	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	3 cut(s)	143, 651, 760
SmoI	CTYRAG	3 cut(s)	143, 651, 760
Sse9I	AATT	3 cut(s)	233, 271, 702
SsiI	CCGC	1 cut(s)	799
SspMI	CTAG	2 cut(s)	113, 853
SstI	GAGCTC	1 cut(s)	806
StyD4I	CCNGG	4 cut(s)	19, 43, 60, 592
StyI	CCWWGG	1 cut(s)	307
TaqI	TCGA	3 cut(s)	144, 282, 345
TasI	AATT	3 cut(s)	233, 271, 702
TatI	WGTACW	1 cut(s)	713
Tru1I	TTAA	2 cut(s)	270, 488
Tru9I	TTAA	2 cut(s)	270, 488
TscAI	CASTG	2 cut(s)	358, 526
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	98, 480, 714
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	2 cut(s)	358, 526
XagI	CCTNNNNNAGG	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	143
XmnI	GAANNNNTTC	3 cut(s)	161, 433, 643
XspI	CTAG	2 cut(s)	113, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.