Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Forward (+)

313184 .. 314205

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCCTTTTCTTCCAATCAGTTCTGCTTTGAGTAACTCTCTTGACACCCACATTGGAGTCTCGCCTGCTGTGGCTGATGGGAGAGAACAGAATGTGACAAATAATGATCACACTGATGCACTATTGAAGTTGCTTTGTGAACCTCAATACCTTAGTAATTGTGCCTGGCATGGAAACTTTGAATTTGCCATTGCTAATGTTCCTGCAAATTATCTGTCTTCATACAACACCAGTGTAAGTTGCAAGAGTGGAAAAATAGACAATGTTTACGCACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCAGTCAATATCCCGGAACCCGTCCTACGGGCAATGAACAGAAAGAATGAGGACTATGGTTCTCCAGCTGTTCTAGCGATGACAAAAGTCCTGCTCGAGGATGTCAAGAAGATTTTCAAGACTACTACCGTAACTCCATTTATGATCTCTACCACAGGTATTGGTGCATGGGAGAGTGCACTTACAAATACATTGTCCCCTGGAGATCGGATTGTATCTTTCCTGATTGGCCAATTCAGTTTGCTGTGGATTGATCAACGGCAGCGCGTTAATTTCAATGTCGATGTTGTGGAAAGTGAATTGGGCCAAGGTGCCAACCTTGACATTCTGGCATCAAAAAGTGTCGATGACACTGCACACACTATAAAGGCAGTATGCATTGTTCACAATGAAATGACAACTGGAGTTACCAATAACTTGGCTACAGTGAGAAAAATACTTGACCACTACAAGCATCCGGCTTTCTTTCTTGTTGATGGAATGTCTTCCATATGTGCTCTGGATTTCCGTACAGATGAATGGGGAGTAGATGTAGCCTTAACTGGCTCCCATAAAGCTCTTTCCCTTCCCACTGGCATAGGGATTGTGTGTGCAAGCCCCAAAGCTCTTTCCCGCCCATTTGGTACTTCTTCAACTCCTAATCCTAGATATGTATCAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

322

Amino Acids

34.86

Weight (kDa)

6.13

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	152 - 305	9.9e-15	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AccII	CGCG	1 cut(s)	570
AciI	CCGC	1 cut(s)	916
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	2 cut(s)	814, 928
AfiI	CCNNNNNNNGG	2 cut(s)	330, 400
AgsI	TTSAA	5 cut(s)	127, 182, 421, 580, 936
AjnI	CCWGG	4 cut(s)	164, 274, 298, 502
AluBI	AGCT	3 cut(s)	371, 860, 908
AluI	AGCT	3 cut(s)	371, 860, 908
Alw21I	GWGCWC	2 cut(s)	484, 802
Alw26I	GTCTC	1 cut(s)	64
Alw44I	GTGCAC	1 cut(s)	480
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	3 cut(s)	302, 532, 607
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	4 cut(s)	200, 232, 482, 514
Asp700I	GAANNNNTTC	2 cut(s)	416, 787
AspLEI	GCGC	1 cut(s)	570
AspS9I	GGNCC	2 cut(s)	302, 607
AsuC2I	CCSGG	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	484
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	614
BbsI	GAAGAC	2 cut(s)	210, 780
Bbv12I	GWGCWC	2 cut(s)	484, 802
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	3 cut(s)	71, 294, 773
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BciT130I	CCWGG	4 cut(s)	166, 276, 300, 504
BclI	TGATCA	2 cut(s)	106, 556
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	377, 948
BfmI	CTRYAG	1 cut(s)	726
BisI	GCNGC	1 cut(s)	566
BlsI	GCNGC	1 cut(s)	567
Bme1390I	CCNGG	5 cut(s)	166, 276, 300, 317, 504
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	302, 607
BmiI	GGNNCC	4 cut(s)	284, 321, 616, 850
BmrFI	CCNGG	5 cut(s)	166, 276, 300, 317, 504
BmsI	GCATC	3 cut(s)	106, 644, 766
BoxI	GACNNNNGTC	1 cut(s)	389
BpiI	GAAGAC	2 cut(s)	210, 780
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	3 cut(s)	351, 525, 726
BpuMI	CCSGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	955
BsaJI	CCNNGG	3 cut(s)	299, 502, 610
BsaXI	ACNNNNNCTCC	4 cut(s)	421, 451, 819, 849
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 400
Bse1I	ACTGG	5 cut(s)	231, 305, 709, 850, 880
Bse3DI	GCAATG	2 cut(s)	189, 342
Bse8I	GATNNNNATC	1 cut(s)	955
BseBI	CCWGG	4 cut(s)	166, 276, 300, 504
BseDI	CCNNGG	3 cut(s)	299, 502, 610
BseGI	GGATG	2 cut(s)	409, 757
BseJI	GATNNNNATC	1 cut(s)	955
BseLI	CCNNNNNNNGG	2 cut(s)	330, 400
BseMI	GCAATG	2 cut(s)	189, 342
BseNI	ACTGG	5 cut(s)	231, 305, 709, 850, 880
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	577
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	3 cut(s)	304, 534, 609
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	2 cut(s)	484, 802
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	317, 761
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	330, 400
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	304, 534, 609
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	484, 802
Bsp143I	GATC	4 cut(s)	106, 447, 508, 556
BspACI	CCGC	1 cut(s)	916
BspANI	GGCC	3 cut(s)	304, 534, 609
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	4 cut(s)	284, 321, 616, 850
BspT107I	GGYRCC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	189, 342
BsrI	ACTGG	5 cut(s)	231, 305, 709, 850, 880
BssECI	CCNNGG	3 cut(s)	299, 502, 610
BssMI	GATC	4 cut(s)	106, 447, 508, 556
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	4 cut(s)	166, 276, 300, 504
Bst4CI	ACNGT	2 cut(s)	433, 730
BstC8I	GCNNGC	2 cut(s)	66, 898
BstDEI	CTNAG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	409, 757
BstFNI	CGCG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	4 cut(s)	109, 450, 511, 559
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	106, 447, 508, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	4 cut(s)	166, 276, 300, 504
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	5 cut(s)	164, 274, 298, 315, 502
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	484
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	577
BstV2I	GAAGAC	2 cut(s)	210, 780
BstXI	CCANNNNNNTGG	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	304, 534, 609
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	409, 757
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	5 cut(s)	111, 238, 654, 735, 873
Cac8I	GCNNGC	2 cut(s)	66, 898
CfoI	GCGC	1 cut(s)	570
Cfr13I	GGNCC	2 cut(s)	302, 607
Csp6I	GTAC	2 cut(s)	813, 927
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	2 cut(s)	170, 471
CviQI	GTAC	2 cut(s)	813, 927
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	4 cut(s)	108, 449, 510, 558
DpnII	GATC	4 cut(s)	106, 447, 508, 556
EaeI	YGGCCR	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoRII	CCWGG	4 cut(s)	164, 274, 298, 502
EcoT14I	CCWWGG	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	2 cut(s)	173, 474
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	169, 470
FauI	CCCGC	1 cut(s)	923
FauNDI	CATATG	1 cut(s)	794
FbaI	TGATCA	2 cut(s)	106, 556
Fnu4HI	GCNGC	1 cut(s)	566
FokI	GGATG	2 cut(s)	416, 744
Fsp4HI	GCNGC	1 cut(s)	566
FspBI	CTAG	2 cut(s)	377, 948
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	1 cut(s)	566
GsuI	CTGGAG	3 cut(s)	351, 525, 726
HaeIII	GGCC	3 cut(s)	304, 534, 609
HapII	CCGG	2 cut(s)	317, 761
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	2 cut(s)	173, 474
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	2 cut(s)	317, 761
Hpy166II	GTNNAC	4 cut(s)	140, 268, 482, 688
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	5 cut(s)	41, 409, 421, 526, 803
Hpy8I	GTNNAC	4 cut(s)	140, 268, 482, 688
HpyAV	CCTTC	2 cut(s)	273, 878
HpyCH4III	ACNGT	2 cut(s)	433, 730
HpyCH4V	TGCA	8 cut(s)	119, 206, 243, 470, 482, 659, 681, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	173, 474
HspAI	GCGC	1 cut(s)	568
Ksp22I	TGATCA	2 cut(s)	106, 556
Kzo9I	GATC	4 cut(s)	106, 447, 508, 556
LmnI	GCTCC	1 cut(s)	854
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	3 cut(s)	106, 644, 766
MaeI	CTAG	2 cut(s)	377, 948
MaeIII	GTNAC	4 cut(s)	32, 94, 433, 709
MalI	GATC	4 cut(s)	108, 449, 510, 558
MboI	GATC	4 cut(s)	106, 447, 508, 556
MboII	GAAGA	4 cut(s)	210, 424, 780, 924
MhlI	GDGCHC	2 cut(s)	484, 802
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	6 cut(s)	157, 182, 208, 536, 574, 602
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	153, 346, 394
Mox20I	TGGCCA	1 cut(s)	534
Mph1103I	ATGCAT	1 cut(s)	683
MroXI	GAANNNNTTC	2 cut(s)	416, 787
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	2 cut(s)	573, 842
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	317, 761
MspR9I	CCNGG	5 cut(s)	166, 276, 300, 317, 504
MvaI	CCWGG	4 cut(s)	166, 276, 300, 504
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	794
NdeII	GATC	4 cut(s)	106, 447, 508, 556
NlaIII	CATG	2 cut(s)	173, 474
NlaIV	GGNNCC	4 cut(s)	284, 321, 616, 850
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	683
PaeR7I	CTCGAG	1 cut(s)	398
PdmI	GAANNNNTTC	2 cut(s)	416, 787
PfoI	TCCNGGA	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	567
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshAI	GACNNNNGTC	1 cut(s)	389
Psp6I	CCWGG	4 cut(s)	164, 274, 298, 502
PspGI	CCWGG	4 cut(s)	164, 274, 298, 502
PspN4I	GGNNCC	4 cut(s)	284, 321, 616, 850
PspPI	GGNCC	2 cut(s)	302, 607
PspXI	VCTCGAGB	1 cut(s)	398
PsrI	GAACNNNNNNTAC	4 cut(s)	312, 344, 669, 701
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	2 cut(s)	814, 928
RsaNI	GTAC	2 cut(s)	813, 927
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	573, 842
SatI	GCNGC	1 cut(s)	566
Sau3AI	GATC	4 cut(s)	106, 447, 508, 556
Sau96I	GGNCC	2 cut(s)	302, 607
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	5 cut(s)	166, 276, 300, 317, 504
SduI	GDGCHC	2 cut(s)	484, 802
SetI	ASST	8 cut(s)	145, 153, 373, 463, 616, 624, 862, 910
SfaNI	GCATC	3 cut(s)	106, 644, 766
SfcI	CTRYAG	1 cut(s)	726
Sfr274I	CTCGAG	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	6 cut(s)	157, 182, 208, 536, 574, 602
SsiI	CCGC	1 cut(s)	916
SspMI	CTAG	2 cut(s)	377, 948
StyD4I	CCNGG	5 cut(s)	164, 274, 298, 315, 502
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	433, 730
TaqI	TCGA	3 cut(s)	399, 585, 648
TasI	AATT	6 cut(s)	157, 182, 208, 536, 574, 602
Tru1I	TTAA	2 cut(s)	573, 842
Tru9I	TTAA	2 cut(s)	573, 842
TscAI	CASTG	5 cut(s)	118, 238, 661, 735, 880
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	565
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	4 cut(s)	210, 353, 708, 834
TspGWI	ACGGA	1 cut(s)	800
TspRI	CASTG	5 cut(s)	118, 238, 661, 735, 880
VneI	GTGCAC	1 cut(s)	480
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XhoI	CTCGAG	1 cut(s)	398
XmnI	GAANNNNTTC	2 cut(s)	416, 787
XspI	CTAG	2 cut(s)	377, 948
Zsp2I	ATGCAT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.