Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Reverse (-)

21093060 .. 21096829

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGACAATGTTTACGCCCCAGGAAGGAACCATCTCTTTGTTCCGGGACCAGTCAATATCCCGGAACCTGTCCTTCGGGCAATGAACAGAAACAATGAGGACTACCGTTCACCAGCTATTCCAGCAATGACAAAAATTCTGCTTGAGGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTATGATCCCTACCACAGGTACTGGGGCATGGGAGAGTGCACTTACAAATACGTTGTCCCCTGGGGATCGGATCGTATCTTTCCTGATTGGCCAATTCAGTTTGCTGTGGATTGATCAGCAACAGCGCCTTAATTTCAAGGTTGATGTTGTGGAAAGTGAATGGGGCCAAGGTGCCAACCTTGACATTCTGGCATCAAAACTCGCTGAAGACACTGCGCACACCATAAAGGCAGTATGCATTGTTCACAACGAGACAGCAACTGGAGTTACCAATAACTTGGCTACAGTGAGAAAAATACTTGACCACTATAGGCATCCGGCTCTCTTTCTTGTTGATGGAGTGTCTTCCATATGTGCTCTTGATTTCCGTATGGATGAATGGGGAGTAGATGTAGCCTTAACAGGTTCCCAGAAAGCTCTTTCCCTTCCCACTGGCATAGGGATTGTGTGTGCAAGCCCCAAAGCTCTTGAGGCATCCAAAACTGCAAAGTCAGTAAGAGTTTTCTTCGACTGGAATGATTACTTGAAGTTCTATAAGTTGGGCACATATTGGCCATACACCCCTTCTGTTCAGTTGCTGTATGGGCTACGAGCAGCTCTTGATCTTCTGTTTGAGGAAGGACTTGACAATGTGATTGCAAGGCATAGCCGTTTGGGAAAAGCAACAAGGCTTGCTGTGGAGGCATGGGGCTTGAAGAACTGCACCCAAAAAGAAGAATGGGTCAGTGACACAGTGACTGCTGTCCTTGTTCCACCATATATTGACAGTACAGAAATTGTGAGAAGGGCGTGGAAAAGGTACAATCTGAGTTTAGGCCTTGGCCTGAACAAAATCGCTGGCAAGGTTTTCAGAATAGGGCATCTCGGCAATCTGAACGAGTTGCAATTGTTGGGCTGTCTTGCTGGTGTTGAGATGGTGCTTAGGGACTTGGGCTACCCGGTCAAGCTAGGAAGCGGAGTAGCAGCTGCTTCTGCATACTTGCAGAACAACACTCCTCTCATCCCTTCCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

402

Amino Acids

44.14

Weight (kDa)

8.46

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	65 - 291	9.9e-22	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	359
AciI	CCGC	1 cut(s)	1143
AclWI	GGATC	3 cut(s)	187, 261, 266
AcoI	YGGCCR	2 cut(s)	277, 740
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	3 cut(s)	208, 958, 989
AfiI	CCNNNNNNNGG	3 cut(s)	24, 203, 1198
AgsI	TTSAA	4 cut(s)	166, 325, 715, 883
AjnI	CCWGG	3 cut(s)	19, 247, 1196
AluBI	AGCT	6 cut(s)	116, 605, 653, 785, 1135, 1154
AluI	AGCT	6 cut(s)	116, 605, 653, 785, 1135, 1154
Alw21I	GWGCWC	2 cut(s)	229, 547
Alw26I	GTCTC	1 cut(s)	434
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	187, 261, 266
AlwNI	CAGNNNCTG	4 cut(s)	209, 449, 766, 926
AoxI	GGCC	5 cut(s)	277, 352, 740, 1003, 1009
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	3 cut(s)	782, 1151, 1154
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	315, 406
AspS9I	GGNCC	2 cut(s)	47, 352
AsuC2I	CCSGG	3 cut(s)	45, 62, 1127
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	2 cut(s)	229, 734
BalI	TGGCCA	2 cut(s)	279, 742
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	402, 525
Bbv12I	GWGCWC	2 cut(s)	229, 547
BbvI	GCAGC	3 cut(s)	794, 1141, 1163
BccI	CCATC	3 cut(s)	39, 518, 1096
BceAI	ACGGC	1 cut(s)	822
BciT130I	CCWGG	3 cut(s)	21, 249, 1198
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	3 cut(s)	45, 62, 1127
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	1136
BfmI	CTRYAG	2 cut(s)	471, 496
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	3 cut(s)	783, 1152, 1155
BlsI	GCNGC	3 cut(s)	784, 1153, 1156
Bme1390I	CCNGG	6 cut(s)	21, 45, 62, 249, 1127, 1198
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 352
BmiI	GGNNCC	6 cut(s)	29, 48, 66, 353, 361, 595
BmrFI	CCNGG	6 cut(s)	21, 45, 62, 249, 1127, 1198
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	4 cut(s)	389, 511, 671, 1057
BmuI	ACTGGG	1 cut(s)	219
BoxI	GACNNNNGTC	1 cut(s)	929
BpiI	GAAGAC	2 cut(s)	402, 525
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	1109
BpuEI	CTTGAG	2 cut(s)	164, 677
BpuMI	CCSGG	3 cut(s)	45, 62, 1127
BsaJI	CCNNGG	6 cut(s)	19, 247, 248, 355, 1006, 1197
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 203, 1198
Bse1I	ACTGG	6 cut(s)	50, 181, 214, 454, 625, 704
Bse3DI	GCAATG	2 cut(s)	87, 132
BseBI	CCWGG	3 cut(s)	21, 249, 1198
BseDI	CCNNGG	6 cut(s)	19, 247, 248, 355, 1006, 1197
BseGI	GGATG	5 cut(s)	154, 502, 568, 662, 1188
BseLI	CCNNNNNNNGG	3 cut(s)	24, 203, 1198
BseMI	GCAATG	2 cut(s)	87, 132
BseMII	CTCAG	1 cut(s)	986
BseNI	ACTGG	6 cut(s)	50, 181, 214, 454, 625, 704
BseRI	GAGGAG	1 cut(s)	1173
BseSI	GKGCMC	2 cut(s)	229, 734
BseXI	GCAGC	3 cut(s)	794, 1141, 1163
BsgI	GTGCAG	1 cut(s)	874
BshFI	GGCC	5 cut(s)	279, 354, 742, 1005, 1011
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	229, 547
BsiSI	CCGG	4 cut(s)	44, 62, 506, 1127
BslFI	GGGAC	3 cut(s)	60, 229, 1127
BslI	CCNNNNNNNGG	3 cut(s)	24, 203, 1198
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	3 cut(s)	60, 229, 1127
BsnI	GGCC	5 cut(s)	279, 354, 742, 1005, 1011
Bsp1286I	GDGCHC	3 cut(s)	229, 547, 734
Bsp143I	GATC	5 cut(s)	192, 253, 258, 301, 790
BspACI	CCGC	1 cut(s)	1143
BspANI	GGCC	5 cut(s)	279, 354, 742, 1005, 1011
BspCNI	CTCAG	1 cut(s)	987
BspLI	GGNNCC	6 cut(s)	29, 48, 66, 353, 361, 595
BspPI	GGATC	3 cut(s)	187, 261, 266
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	87, 132
BsrI	ACTGG	6 cut(s)	50, 181, 214, 454, 625, 704
BssECI	CCNNGG	6 cut(s)	19, 247, 248, 355, 1006, 1197
BssMI	GATC	5 cut(s)	192, 253, 258, 301, 790
BssT1I	CCWWGG	2 cut(s)	355, 1006
Bst2UI	CCWGG	3 cut(s)	21, 249, 1198
Bst4CI	ACNGT	4 cut(s)	107, 475, 922, 956
BstC8I	GCNNGC	3 cut(s)	643, 861, 1027
BstDEI	CTNAG	2 cut(s)	995, 1109
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	5 cut(s)	154, 502, 568, 662, 1188
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	2 cut(s)	315, 406
BstKTI	GATC	5 cut(s)	195, 256, 261, 304, 793
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	5 cut(s)	192, 253, 258, 301, 790
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 659, 772, 869, 1160
BstNI	CCWGG	3 cut(s)	21, 249, 1198
BstPAI	GACNNNNGTC	1 cut(s)	929
BstSCI	CCNGG	6 cut(s)	19, 43, 60, 247, 1125, 1196
BstSFI	CTRYAG	2 cut(s)	471, 496
BstSLI	GKGCMC	2 cut(s)	229, 734
BstV1I	GCAGC	3 cut(s)	794, 1141, 1163
BstV2I	GAAGAC	2 cut(s)	402, 525
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	5 cut(s)	279, 354, 742, 1005, 1011
BtsCI	GGATG	5 cut(s)	154, 502, 568, 662, 1188
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	5 cut(s)	399, 480, 618, 919, 927
Cac8I	GCNNGC	3 cut(s)	643, 861, 1027
CaiI	CAGNNNCTG	4 cut(s)	209, 449, 766, 926
CfoI	GCGC	2 cut(s)	315, 406
Cfr13I	GGNCC	2 cut(s)	47, 352
Csp6I	GTAC	3 cut(s)	207, 957, 988
CviAII	CATG	2 cut(s)	216, 873
CviQI	GTAC	3 cut(s)	207, 957, 988
DdeI	CTNAG	2 cut(s)	995, 1109
DpnI	GATC	5 cut(s)	194, 255, 260, 303, 792
DpnII	GATC	5 cut(s)	192, 253, 258, 301, 790
EaeI	YGGCCR	2 cut(s)	277, 740
Eco130I	CCWWGG	2 cut(s)	355, 1006
Eco147I	AGGCCT	1 cut(s)	1005
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	19, 247, 1196
EcoT14I	CCWWGG	2 cut(s)	355, 1006
EcoT22I	ATGCAT	1 cut(s)	428
ErhI	CCWWGG	2 cut(s)	355, 1006
FaeI	CATG	2 cut(s)	219, 876
FaqI	GGGAC	3 cut(s)	60, 229, 1127
FatI	CATG	2 cut(s)	215, 872
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	783, 1152, 1155
FokI	GGATG	5 cut(s)	161, 489, 575, 649, 1175
Fsp4HI	GCNGC	3 cut(s)	783, 1152, 1155
FspBI	CTAG	1 cut(s)	1136
FspI	TGCGCA	1 cut(s)	405
GlaI	GCGC	2 cut(s)	314, 405
GluI	GCNGC	3 cut(s)	783, 1152, 1155
GsuI	CTGGAG	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	5 cut(s)	279, 354, 742, 1005, 1011
HapII	CCGG	4 cut(s)	44, 62, 506, 1127
HhaI	GCGC	2 cut(s)	315, 406
Hin1II	CATG	2 cut(s)	219, 876
Hin6I	GCGC	2 cut(s)	313, 404
HinP1I	GCGC	2 cut(s)	313, 404
HpaII	CCGG	4 cut(s)	44, 62, 506, 1127
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	4 cut(s)	13, 110, 227, 433
Hpy188I	TCNGA	4 cut(s)	258, 996, 1040, 1062
Hpy188III	TCNNGA	6 cut(s)	154, 166, 271, 548, 656, 788
Hpy8I	GTNNAC	4 cut(s)	13, 110, 227, 433
HpyAV	CCTTC	7 cut(s)	18, 83, 623, 762, 800, 966, 1203
HpyCH4III	ACNGT	4 cut(s)	107, 475, 922, 956
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	9 cut(s)	227, 426, 641, 674, 827, 891, 1072, 1163, 1171
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 659, 772, 869, 1160
HpyF3I	CTNAG	2 cut(s)	995, 1109
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	219, 876
HspAI	GCGC	2 cut(s)	313, 404
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	192, 253, 258, 301, 790
Lsp1109I	GCAGC	3 cut(s)	794, 1141, 1163
LweI	GCATC	4 cut(s)	389, 511, 671, 1057
MaeI	CTAG	1 cut(s)	1136
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	3 cut(s)	454, 914, 922
MalI	GATC	5 cut(s)	194, 255, 260, 303, 792
MboI	GATC	5 cut(s)	192, 253, 258, 301, 790
MboII	GAAGA	7 cut(s)	169, 407, 525, 685, 785, 895, 914
MfeI	CAATTG	1 cut(s)	1073
MhlI	GDGCHC	3 cut(s)	229, 547, 734
MlsI	TGGCCA	2 cut(s)	279, 742
MluCI	AATT	5 cut(s)	135, 281, 319, 963, 1073
MluNI	TGGCCA	2 cut(s)	279, 742
MnlI	CCTC	6 cut(s)	91, 139, 652, 796, 862, 1194
Mox20I	TGGCCA	2 cut(s)	279, 742
Mph1103I	ATGCAT	1 cut(s)	428
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	2 cut(s)	279, 742
MseI	TTAA	2 cut(s)	318, 587
Msp20I	TGGCCA	2 cut(s)	279, 742
MspA1I	CMGCKG	1 cut(s)	1154
MspI	CCGG	4 cut(s)	44, 62, 506, 1127
MspR9I	CCNGG	6 cut(s)	21, 45, 62, 249, 1127, 1198
MunI	CAATTG	1 cut(s)	1073
MvaI	CCWGG	3 cut(s)	21, 249, 1198
MwoI	GCNNNNNNNGC	5 cut(s)	122, 659, 772, 869, 1160
NciI	CCSGG	3 cut(s)	45, 62, 1127
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	5 cut(s)	192, 253, 258, 301, 790
NlaIII	CATG	2 cut(s)	219, 876
NlaIV	GGNNCC	6 cut(s)	29, 48, 66, 353, 361, 595
NmeAIII	GCCGAG	1 cut(s)	1032
NmuCI	GTSAC	2 cut(s)	914, 922
NsbI	TGCGCA	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	428
PasI	CCCWGGG	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	1005
PdmI	GAANNNNTTC	1 cut(s)	161
PfoI	TCCNGGA	2 cut(s)	43, 60
PkrI	GCNGC	3 cut(s)	784, 1153, 1156
PshAI	GACNNNNGTC	1 cut(s)	929
Psp6I	CCWGG	3 cut(s)	19, 247, 1196
PspGI	CCWGG	3 cut(s)	19, 247, 1196
PspN4I	GGNNCC	6 cut(s)	29, 48, 66, 353, 361, 595
PspPI	GGNCC	2 cut(s)	47, 352
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PstNI	CAGNNNCTG	4 cut(s)	209, 449, 766, 926
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	3 cut(s)	208, 958, 989
RsaNI	GTAC	3 cut(s)	207, 957, 988
SaqAI	TTAA	2 cut(s)	318, 587
SatI	GCNGC	3 cut(s)	783, 1152, 1155
Sau3AI	GATC	5 cut(s)	192, 253, 258, 301, 790
Sau96I	GGNCC	2 cut(s)	47, 352
ScrFI	CCNGG	6 cut(s)	21, 45, 62, 249, 1127, 1198
SduI	GDGCHC	3 cut(s)	229, 547, 734
SfaNI	GCATC	4 cut(s)	389, 511, 671, 1057
SfcI	CTRYAG	2 cut(s)	471, 496
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	143, 656
SmoI	CTYRAG	2 cut(s)	143, 656
Sse9I	AATT	5 cut(s)	135, 281, 319, 963, 1073
SseBI	AGGCCT	1 cut(s)	1005
SsiI	CCGC	1 cut(s)	1143
SspMI	CTAG	1 cut(s)	1136
StuI	AGGCCT	1 cut(s)	1005
StyD4I	CCNGG	6 cut(s)	19, 43, 60, 247, 1125, 1196
StyI	CCWWGG	2 cut(s)	355, 1006
TaaI	ACNGT	4 cut(s)	107, 475, 922, 956
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	696
TasI	AATT	5 cut(s)	135, 281, 319, 963, 1073
TatI	WGTACW	1 cut(s)	956
Tru1I	TTAA	2 cut(s)	318, 587
Tru9I	TTAA	2 cut(s)	318, 587
TscAI	CASTG	5 cut(s)	406, 480, 625, 919, 927
TseFI	GTSAC	2 cut(s)	914, 922
TseI	GCWGC	3 cut(s)	782, 1151, 1154
Tsp45I	GTSAC	2 cut(s)	914, 922
TspDTI	ATGAA	2 cut(s)	98, 579
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	5 cut(s)	406, 480, 625, 919, 927
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	1136
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.