Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Reverse (-)

3992061 .. 3993744

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGACAATGTTTACGCACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCAGTCAATATCCCAGAACCCGTTCTTCGGGCAATGAACAGAAACAATGAGGACTATGGTTCTCCAGCTGTTGCAGCAATGACAAAAGTCCCGCTCGAGGATGTCAAGAAGATTTTCAAGACTACTACCGGAAGTCCATTTATGATTTCTACCACAAGTACTGGTGCATGGGAGAGTGCACTTACAAATACATTGTCCCCTGGAGATCGGATTGTATCTTTCCTGATTGGCCAATTCAGTTTGCTGTGGATTGATCAACGGCAGCGCGTTAATTTCAATGTCGATGTTGTGGAAAGTATGGGGCCAAGGCATCCGGCTTTCTTTCTTGTTGATGGAATGTCTTCCATATGTGCTATGGATTTCCGTATAGATGAATGGGGAGTAGATGTAGCCTTAATTGGCTCCCAGAAAGCTCTTTCCCTTCCCACTGGCATAGGGATTGTGTGTGCAAGCCCCAAAGCTCTTTCCCGCCCATTTGTTAATGAGGAAGTGGCCCGCGAGTCAGAGTCGGAGCAGCCCGGTTTGGCAGGAATCGGTGGCAATAGTGATAGCAACAACAACAACCGTGGCGCCGCCCTTGGCCAGCAACACTGCTGGGGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

218

Amino Acids

23.4

Weight (kDa)

5.19

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	115 - 172	2.2e-07	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	2 cut(s)	315, 546
AciI	CCGC	4 cut(s)	140, 517, 544, 621
AcoI	YGGCCR	2 cut(s)	277, 628
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	75, 145
AgsI	TTSAA	2 cut(s)	166, 325
AjnI	CCWGG	3 cut(s)	19, 43, 247
AluBI	AGCT	3 cut(s)	116, 461, 509
AluI	AGCT	3 cut(s)	116, 461, 509
Alw21I	GWGCWC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	5 cut(s)	47, 277, 350, 540, 628
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	4 cut(s)	122, 310, 562, 648
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	3 cut(s)	69, 161, 388
AspLEI	GCGC	2 cut(s)	315, 620
AspS9I	GGNCC	3 cut(s)	47, 350, 541
AsuC2I	CCSGG	1 cut(s)	567
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	229
BalI	TGGCCA	2 cut(s)	279, 630
BanI	GGYRCC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	4 cut(s)	134, 322, 574, 635
BccI	CCATC	2 cut(s)	39, 374
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	3 cut(s)	21, 45, 249
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	567
BfaI	CTAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	621
BisI	GCNGC	5 cut(s)	123, 311, 563, 621, 649
BlsI	GCNGC	5 cut(s)	124, 312, 564, 622, 650
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	4 cut(s)	21, 45, 249, 567
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	47, 350, 541
BmiI	GGNNCC	4 cut(s)	29, 351, 451, 619
BmrFI	CCNGG	4 cut(s)	21, 45, 249, 567
BmsI	GCATC	1 cut(s)	367
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	2 cut(s)	96, 270
BpuMI	CCSGG	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	5 cut(s)	44, 247, 353, 613, 625
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 145
Bse1I	ACTGG	3 cut(s)	50, 214, 481
Bse3DI	GCAATG	2 cut(s)	87, 132
BseBI	CCWGG	3 cut(s)	21, 45, 249
BseDI	CCNNGG	5 cut(s)	44, 247, 353, 613, 625
BseGI	GGATG	2 cut(s)	154, 358
BseLI	CCNNNNNNNGG	2 cut(s)	75, 145
BseMI	GCAATG	2 cut(s)	87, 132
BseNI	ACTGG	3 cut(s)	50, 214, 481
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	4 cut(s)	134, 322, 574, 635
BseYI	CCCAGC	1 cut(s)	642
Bsh1236I	CGCG	2 cut(s)	315, 546
BshFI	GGCC	5 cut(s)	49, 279, 352, 542, 630
BshNI	GGYRCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	3 cut(s)	177, 362, 567
BslFI	GGGAC	2 cut(s)	122, 229
BslI	CCNNNNNNNGG	2 cut(s)	75, 145
BsmFI	GGGAC	2 cut(s)	122, 229
BsnI	GGCC	5 cut(s)	49, 279, 352, 542, 630
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	253, 301
BspACI	CCGC	4 cut(s)	140, 517, 544, 621
BspANI	GGCC	5 cut(s)	49, 279, 352, 542, 630
BspFNI	CGCG	2 cut(s)	315, 546
BspLI	GGNNCC	4 cut(s)	29, 351, 451, 619
BspT107I	GGYRCC	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	87, 132
BsrI	ACTGG	3 cut(s)	50, 214, 481
BssECI	CCNNGG	5 cut(s)	44, 247, 353, 613, 625
BssMI	GATC	2 cut(s)	253, 301
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	2 cut(s)	353, 625
Bst2UI	CCWGG	3 cut(s)	21, 45, 249
Bst4CI	ACNGT	1 cut(s)	614
BstACI	GRCGYC	1 cut(s)	618
BstC8I	GCNNGC	3 cut(s)	499, 544, 632
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	154, 358
BstFNI	CGCG	2 cut(s)	315, 546
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	2 cut(s)	315, 620
BstKTI	GATC	2 cut(s)	256, 304
BstMBI	GATC	2 cut(s)	253, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 648
BstNI	CCWGG	3 cut(s)	21, 45, 249
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	4 cut(s)	19, 43, 247, 565
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	2 cut(s)	315, 546
BstV1I	GCAGC	4 cut(s)	134, 322, 574, 635
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	5 cut(s)	49, 279, 352, 542, 630
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	154, 358
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	474, 637
Cac8I	GCNNGC	3 cut(s)	499, 544, 632
CfoI	GCGC	2 cut(s)	315, 620
Cfr13I	GGNCC	3 cut(s)	47, 350, 541
Csp6I	GTAC	1 cut(s)	207
CspCI	CAANNNNNGTGG	2 cut(s)	595, 630
CviAII	CATG	1 cut(s)	216
CviQI	GTAC	1 cut(s)	207
DinI	GGCGCC	1 cut(s)	619
DpnI	GATC	2 cut(s)	255, 303
DpnII	GATC	2 cut(s)	253, 301
EaeI	YGGCCR	2 cut(s)	277, 628
Eco130I	CCWWGG	2 cut(s)	353, 625
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	19, 43, 247
EcoT14I	CCWWGG	2 cut(s)	353, 625
EgeI	GGCGCC	1 cut(s)	619
EheI	GGCGCC	1 cut(s)	619
ErhI	CCWWGG	2 cut(s)	353, 625
FaeI	CATG	1 cut(s)	219
FaiI	YATR	9 cut(s)	105, 191, 217, 347, 395, 397, 404, 416, 482
FaqI	GGGAC	2 cut(s)	122, 229
FatI	CATG	1 cut(s)	215
FauI	CCCGC	3 cut(s)	147, 524, 551
FauNDI	CATATG	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	123, 311, 563, 621, 649
FokI	GGATG	2 cut(s)	161, 345
Fsp4HI	GCNGC	5 cut(s)	123, 311, 563, 621, 649
FspBI	CTAG	1 cut(s)	652
GlaI	GCGC	2 cut(s)	314, 619
GluI	GCNGC	5 cut(s)	123, 311, 563, 621, 649
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	2 cut(s)	96, 270
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	5 cut(s)	49, 279, 352, 542, 630
HapII	CCGG	3 cut(s)	177, 362, 567
HhaI	GCGC	2 cut(s)	315, 620
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	2 cut(s)	313, 618
HinP1I	GCGC	2 cut(s)	313, 618
HinfI	GANTC	3 cut(s)	548, 554, 579
HpaII	CCGG	3 cut(s)	177, 362, 567
Hpy166II	GTNNAC	2 cut(s)	13, 227
Hpy188I	TCNGA	3 cut(s)	258, 553, 559
Hpy188III	TCNNGA	3 cut(s)	154, 166, 271
Hpy8I	GTNNAC	2 cut(s)	13, 227
HpyAV	CCTTC	2 cut(s)	18, 479
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4V	TGCA	4 cut(s)	122, 215, 227, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 648
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	2 cut(s)	313, 618
KasI	GGCGCC	1 cut(s)	617
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	253, 301
LmnI	GCTCC	2 cut(s)	455, 559
Lsp1109I	GCAGC	4 cut(s)	134, 322, 574, 635
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	652
MalI	GATC	2 cut(s)	255, 303
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	2 cut(s)	253, 301
MboII	GAAGA	3 cut(s)	65, 169, 381
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	2 cut(s)	279, 630
MluCI	AATT	3 cut(s)	281, 319, 444
MluNI	TGGCCA	2 cut(s)	279, 630
Mly113I	GGCGCC	1 cut(s)	618
MlyI	GAGTC	2 cut(s)	557, 563
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	3 cut(s)	91, 139, 526
Mox20I	TGGCCA	2 cut(s)	279, 630
MroXI	GAANNNNTTC	3 cut(s)	69, 161, 388
MscI	TGGCCA	2 cut(s)	279, 630
MseI	TTAA	3 cut(s)	318, 443, 528
Msp20I	TGGCCA	2 cut(s)	279, 630
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	177, 362, 567
MspR9I	CCNGG	4 cut(s)	21, 45, 249, 567
MvaI	CCWGG	3 cut(s)	21, 45, 249
MvnI	CGCG	2 cut(s)	315, 546
MwoI	GCNNNNNNNGC	2 cut(s)	122, 648
NarI	GGCGCC	1 cut(s)	618
NciI	CCSGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	2 cut(s)	253, 301
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	4 cut(s)	29, 351, 451, 619
PaeR7I	CTCGAG	1 cut(s)	143
PdmI	GAANNNNTTC	3 cut(s)	69, 161, 388
PfeI	GAWTC	1 cut(s)	579
PkrI	GCNGC	5 cut(s)	124, 312, 564, 622, 650
PleI	GAGTC	2 cut(s)	556, 562
PluTI	GGCGCC	1 cut(s)	621
PpsI	GAGTC	2 cut(s)	556, 562
PshAI	GACNNNNGTC	1 cut(s)	134
Psp6I	CCWGG	3 cut(s)	19, 43, 247
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	3 cut(s)	19, 43, 247
PspN4I	GGNNCC	4 cut(s)	29, 351, 451, 619
PspPI	GGNCC	3 cut(s)	47, 350, 541
PspXI	VCTCGAGB	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	318, 443, 528
SatI	GCNGC	5 cut(s)	123, 311, 563, 621, 649
Sau3AI	GATC	2 cut(s)	253, 301
Sau96I	GGNCC	3 cut(s)	47, 350, 541
ScaI	AGTACT	1 cut(s)	208
SchI	GAGTC	2 cut(s)	557, 563
ScrFI	CCNGG	4 cut(s)	21, 45, 249, 567
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	3 cut(s)	118, 463, 511
SfaNI	GCATC	1 cut(s)	367
SfoI	GGCGCC	1 cut(s)	619
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	281, 319, 444
SsiI	CCGC	4 cut(s)	140, 517, 544, 621
SspDI	GGCGCC	1 cut(s)	617
SspMI	CTAG	1 cut(s)	652
StyD4I	CCNGG	4 cut(s)	19, 43, 247, 565
StyI	CCWWGG	2 cut(s)	353, 625
TaaI	ACNGT	1 cut(s)	614
TaqI	TCGA	2 cut(s)	144, 330
TasI	AATT	3 cut(s)	281, 319, 444
TatI	WGTACW	1 cut(s)	206
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	1 cut(s)	579
Tru1I	TTAA	3 cut(s)	318, 443, 528
Tru9I	TTAA	3 cut(s)	318, 443, 528
TscAI	CASTG	2 cut(s)	481, 644
TseI	GCWGC	4 cut(s)	122, 310, 562, 648
TspDTI	ATGAA	2 cut(s)	98, 435
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	481, 644
VneI	GTGCAC	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XhoI	CTCGAG	1 cut(s)	143
XmnI	GAANNNNTTC	3 cut(s)	69, 161, 388
XspI	CTAG	1 cut(s)	652
ZrmI	AGTACT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.