Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407365.1

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1245

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407365.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1054 bp

tgctcgttcttctggtgcttctagtgcttctgcttctgcaagtggtttttcatctgttgtaccatcttttggtactgattcttcctgtttttcttctgctactttacacagcatgatgccttttcttccaatcagttctactttgagtaactctcttgacacccacattggagtctcgcctgctgtggctgatgggggggaacagaatgtgacaaataatgatcacactgatgcactattgaagttgccttgtgaacctcaaggccttagtaattgtgcctggcatggaagctctgaatttgccattgctaatgttcctgcaaattatccgtcttcatacaacaccggtgtaagctgcaagagtggaaaaatggacaatgtttacgcaccaggaaggaaccatctctttgttccagggccagtcaatatcccggaacccatccttcgggcaatgaacagaaacaatgatgactatggttctccagctgttacagcaatgacaaaagtcctgctcgaggatgtcaagatgattttcaagactactaccggaactccatttatgatctctaccacaggtactggtgcatgggagagtgcacttacaaatacattgtcccctggagatcggattgtatctttcctgattggccaattcagtttgctgtggattgatcaacggcagcgcgttaatttcaatgttgatgttgtggaaagtgaatggggccaagtgagaaaaatacttgaccactacaggcatccggctttctttcttgttgatggaatgtcttccatatgtgctatggatttccatatagatgaatggggagtagatgtagccttaactggctcccagaaagctctttcccttcccactggcatagggattgtgtgtgcaagccccaaagttctttcctgcccatttggtacttcttcaactgctaatcctggatatgtgttgaataatggtattggtaatgatattcttgctggaactttttctgctcaagatcaagcatataattcaacattccatgcttaccagtgcccaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

350

Amino Acids

37.17

Weight (kDa)

5.38

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccII	CGCG	1 cut(s)	685
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	4 cut(s)	61, 74, 578, 926
AfiI	CCNNNNNNNGG	3 cut(s)	69, 445, 515
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	6 cut(s)	242, 536, 695, 934, 959, 1024
AjnI	CCWGG	5 cut(s)	279, 389, 413, 617, 944
AluBI	AGCT	4 cut(s)	292, 355, 486, 858
AluI	AGCT	4 cut(s)	292, 355, 486, 858
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	1 cut(s)	179
Alw44I	GTGCAC	1 cut(s)	595
AlwNI	CAGNNNCTG	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	4 cut(s)	263, 417, 647, 722
ApaLI	GTGCAC	1 cut(s)	595
ApeKI	GCWGC	2 cut(s)	355, 680
ApoI	RAATTY	1 cut(s)	297
ArsI	GACNNNNNNTTYG	4 cut(s)	315, 347, 597, 629
AsiGI	ACCGGT	1 cut(s)	345
Asp700I	GAANNNNTTC	2 cut(s)	785, 995
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	2 cut(s)	417, 722
AsuC2I	CCSGG	1 cut(s)	432
AvaI	CYCGRG	1 cut(s)	513
BaeGI	GKGCMC	2 cut(s)	599, 1047
BalI	TGGCCA	1 cut(s)	649
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	2 cut(s)	325, 778
Bbv12I	GWGCWC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	342, 692
BccI	CCATC	5 cut(s)	71, 186, 409, 447, 771
BceAI	ACGGC	1 cut(s)	693
BciT130I	CCWGG	5 cut(s)	281, 391, 415, 619, 946
BclI	TGATCA	2 cut(s)	221, 671
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	749
BisI	GCNGC	2 cut(s)	356, 681
BlsI	GCNGC	2 cut(s)	357, 682
Bme1390I	CCNGG	6 cut(s)	281, 391, 415, 432, 619, 946
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	417, 722
BmiI	GGNNCC	4 cut(s)	399, 436, 723, 848
BmrFI	CCNGG	6 cut(s)	281, 391, 415, 432, 619, 946
BmsI	GCATC	3 cut(s)	106, 221, 764
BoxI	GACNNNNGTC	1 cut(s)	504
BpiI	GAAGAC	2 cut(s)	325, 778
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	2 cut(s)	466, 640
BpuEI	CTTGAG	2 cut(s)	244, 988
BpuMI	CCSGG	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	414, 617
BsaWI	WCCGGW	2 cut(s)	345, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	536, 566, 817, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 445, 515
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	5 cut(s)	420, 584, 848, 878, 1040
Bse3DI	GCAATG	3 cut(s)	304, 457, 502
BseBI	CCWGG	5 cut(s)	281, 391, 415, 619, 946
BseDI	CCNNGG	2 cut(s)	414, 617
BseGI	GGATG	3 cut(s)	439, 524, 755
BseLI	CCNNNNNNNGG	3 cut(s)	69, 445, 515
BseMI	GCAATG	3 cut(s)	304, 457, 502
BseNI	ACTGG	5 cut(s)	420, 584, 848, 878, 1040
BseSI	GKGCMC	2 cut(s)	599, 1047
BseXI	GCAGC	2 cut(s)	342, 692
Bsh1236I	CGCG	1 cut(s)	685
BshFI	GGCC	4 cut(s)	265, 419, 649, 724
BshTI	ACCGGT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	4 cut(s)	346, 432, 547, 759
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	3 cut(s)	69, 445, 515
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	4 cut(s)	265, 419, 649, 724
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	599, 1047
Bsp143I	GATC	5 cut(s)	221, 562, 623, 671, 1007
BspANI	GGCC	4 cut(s)	265, 419, 649, 724
BspFNI	CGCG	1 cut(s)	685
BspLI	GGNNCC	4 cut(s)	399, 436, 723, 848
BsrDI	GCAATG	3 cut(s)	304, 457, 502
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	5 cut(s)	420, 584, 848, 878, 1040
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	414, 617
BssMI	GATC	5 cut(s)	221, 562, 623, 671, 1007
Bst2UI	CCWGG	5 cut(s)	281, 391, 415, 619, 946
BstC8I	GCNNGC	2 cut(s)	181, 896
BstDEI	CTNAG	1 cut(s)	267
BstENI	CCTNNNNNAGG	1 cut(s)	513
BstF5I	GGATG	3 cut(s)	439, 524, 755
BstFNI	CGCG	1 cut(s)	685
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	5 cut(s)	224, 565, 626, 674, 1010
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	5 cut(s)	221, 562, 623, 671, 1007
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 492
BstNI	CCWGG	5 cut(s)	281, 391, 415, 619, 946
BstPAI	GACNNNNGTC	1 cut(s)	504
BstSCI	CCNGG	6 cut(s)	279, 389, 413, 430, 617, 944
BstSFI	CTRYAG	1 cut(s)	749
BstSLI	GKGCMC	2 cut(s)	599, 1047
BstUI	CGCG	1 cut(s)	685
BstV1I	GCAGC	2 cut(s)	342, 692
BstV2I	GAAGAC	2 cut(s)	325, 778
BsuRI	GGCC	4 cut(s)	265, 419, 649, 724
BtsCI	GGATG	3 cut(s)	439, 524, 755
BtsIMutI	CAGTG	3 cut(s)	226, 871, 1047
Cac8I	GCNNGC	2 cut(s)	181, 896
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	417, 722
Csp6I	GTAC	4 cut(s)	60, 73, 577, 925
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	4 cut(s)	113, 285, 586, 1032
CviQI	GTAC	4 cut(s)	60, 73, 577, 925
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	5 cut(s)	223, 564, 625, 673, 1009
DpnII	GATC	5 cut(s)	221, 562, 623, 671, 1007
EaeI	YGGCCR	1 cut(s)	647
Eco147I	AGGCCT	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	513
EcoRII	CCWGG	5 cut(s)	279, 389, 413, 617, 944
FaeI	CATG	4 cut(s)	116, 288, 589, 1035
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	4 cut(s)	112, 284, 585, 1031
FauNDI	CATATG	1 cut(s)	792
FbaI	TGATCA	2 cut(s)	221, 671
Fnu4HI	GCNGC	2 cut(s)	356, 681
FokI	GGATG	3 cut(s)	426, 531, 742
Fsp4HI	GCNGC	2 cut(s)	356, 681
FspBI	CTAG	1 cut(s)	22
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	2 cut(s)	356, 681
GsuI	CTGGAG	2 cut(s)	466, 640
HaeIII	GGCC	4 cut(s)	265, 419, 649, 724
HapII	CCGG	4 cut(s)	346, 432, 547, 759
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	4 cut(s)	116, 288, 589, 1035
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	2 cut(s)	78, 172
HpaII	CCGG	4 cut(s)	346, 432, 547, 759
Hpy166II	GTNNAC	3 cut(s)	255, 383, 597
Hpy188I	TCNGA	2 cut(s)	296, 628
Hpy188III	TCNNGA	5 cut(s)	156, 524, 536, 641, 1005
Hpy8I	GTNNAC	3 cut(s)	255, 383, 597
HpyAV	CCTTC	3 cut(s)	388, 453, 876
HpyCH4V	TGCA	7 cut(s)	39, 234, 321, 358, 585, 597, 894
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 492
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	116, 288, 589, 1035
HspAI	GCGC	1 cut(s)	683
Ksp22I	TGATCA	2 cut(s)	221, 671
Kzo9I	GATC	5 cut(s)	221, 562, 623, 671, 1007
LmnI	GCTCC	1 cut(s)	852
Lsp1109I	GCAGC	2 cut(s)	342, 692
LweI	GCATC	3 cut(s)	106, 221, 764
MaeI	CTAG	1 cut(s)	22
MaeIII	GTNAC	3 cut(s)	147, 209, 488
MalI	GATC	5 cut(s)	223, 564, 625, 673, 1009
MboI	GATC	5 cut(s)	221, 562, 623, 671, 1007
MboII	GAAGA	6 cut(s)	73, 85, 117, 325, 778, 922
MhlI	GDGCHC	2 cut(s)	599, 1047
MlsI	TGGCCA	1 cut(s)	649
MluCI	AATT	6 cut(s)	272, 297, 323, 651, 689, 1019
MluNI	TGGCCA	1 cut(s)	649
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	268, 509
Mox20I	TGGCCA	1 cut(s)	649
MroXI	GAANNNNTTC	2 cut(s)	785, 995
MscI	TGGCCA	1 cut(s)	649
MseI	TTAA	2 cut(s)	688, 840
MslI	CAYNNNNRTG	2 cut(s)	229, 814
Msp20I	TGGCCA	1 cut(s)	649
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	4 cut(s)	346, 432, 547, 759
MspR9I	CCNGG	6 cut(s)	281, 391, 415, 432, 619, 946
MvaI	CCWGG	5 cut(s)	281, 391, 415, 619, 946
MvnI	CGCG	1 cut(s)	685
MwoI	GCNNNNNNNGC	2 cut(s)	24, 492
NciI	CCSGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	792
NdeII	GATC	5 cut(s)	221, 562, 623, 671, 1007
NlaIII	CATG	4 cut(s)	116, 288, 589, 1035
NlaIV	GGNNCC	4 cut(s)	399, 436, 723, 848
NmuCI	GTSAC	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	785, 995
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	69
PfoI	TCCNGGA	2 cut(s)	430, 944
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	357, 682
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PshAI	GACNNNNGTC	1 cut(s)	504
Psp6I	CCWGG	5 cut(s)	279, 389, 413, 617, 944
PspGI	CCWGG	5 cut(s)	279, 389, 413, 617, 944
PspN4I	GGNNCC	4 cut(s)	399, 436, 723, 848
PspPI	GGNCC	2 cut(s)	417, 722
PspXI	VCTCGAGB	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	486
RsaI	GTAC	4 cut(s)	61, 74, 578, 926
RsaNI	GTAC	4 cut(s)	60, 73, 577, 925
RseI	CAYNNNNRTG	2 cut(s)	229, 814
SaqAI	TTAA	2 cut(s)	688, 840
SatI	GCNGC	2 cut(s)	356, 681
Sau3AI	GATC	5 cut(s)	221, 562, 623, 671, 1007
Sau96I	GGNCC	2 cut(s)	417, 722
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	6 cut(s)	281, 391, 415, 432, 619, 946
SduI	GDGCHC	2 cut(s)	599, 1047
SetI	ASST	6 cut(s)	260, 294, 357, 488, 578, 860
SfaNI	GCATC	3 cut(s)	106, 221, 764
SfcI	CTRYAG	1 cut(s)	749
Sfr274I	CTCGAG	1 cut(s)	513
SgrAI	CRCCGGYG	1 cut(s)	345
SlaI	CTCGAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	229, 814
SmlI	CTYRAG	3 cut(s)	259, 513, 1003
SmoI	CTYRAG	3 cut(s)	259, 513, 1003
Sse9I	AATT	6 cut(s)	272, 297, 323, 651, 689, 1019
SseBI	AGGCCT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	22
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	6 cut(s)	279, 389, 413, 430, 617, 944
TaqI	TCGA	1 cut(s)	514
TasI	AATT	6 cut(s)	272, 297, 323, 651, 689, 1019
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	688, 840
Tru9I	TTAA	2 cut(s)	688, 840
TscAI	CASTG	3 cut(s)	233, 878, 1047
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	355, 680
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	4 cut(s)	40, 325, 468, 832
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	3 cut(s)	233, 878, 1047
Van91I	CCANNNNNTGG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	595
XagI	CCTNNNNNAGG	1 cut(s)	513
XapI	RAATTY	1 cut(s)	297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	797
XhoI	CTCGAG	1 cut(s)	513
XmnI	GAANNNNTTC	2 cut(s)	785, 995
XspI	CTAG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.