Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Reverse (-)

7543092 .. 7556796

Gene Structure 13705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGACAATGTTTATGCACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCAGTCAATATCCCGGAACCCGTCCTTCGGGCAATGAACAGAAACAATGTGGACTATGGTTCTCCAGCTGTTTCAGCAATGACAAAAGTCCTGCTCAAGGATGTCAAGAAGATTTTCAAGAATACTACCAGAACTCCATTTATGATCTCTACCATAGGTACTGGTGCATGGGAGAGTGCACTTACAAATACATTGTCCCCTGGAGATCGGATTGTGTCTTTCCTGATTGGCCAATTCAGTTTGCTGTGGATTGATCAACGGCAGCACGTTAATTTCAATGTCGATGTTGTGGAAAGTGAATGGGGCCAAGTTGTGCCGTATAACAGAATCTTGTGCGGTGGAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

132

Amino Acids

14.68

Weight (kDa)

9.25

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	277
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	75, 145
AgsI	TTSAA	2 cut(s)	166, 325
AjnI	CCWGG	3 cut(s)	19, 43, 247
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	225
AoxI	GGCC	3 cut(s)	47, 277, 352
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	47, 352
AsuC2I	CCSGG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	2 cut(s)	323, 349
BciT130I	CCWGG	3 cut(s)	21, 45, 249
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	4 cut(s)	21, 45, 62, 249
BmgT120I	GGNCC	2 cut(s)	47, 352
BmiI	GGNNCC	3 cut(s)	29, 66, 353
BmrFI	CCNGG	4 cut(s)	21, 45, 62, 249
BoxI	GACNNNNGTC	1 cut(s)	134
BpmI	CTGGAG	2 cut(s)	96, 270
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	44, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 145
Bse1I	ACTGG	2 cut(s)	50, 214
Bse3DI	GCAATG	2 cut(s)	87, 132
BseBI	CCWGG	3 cut(s)	21, 45, 249
BseDI	CCNNGG	2 cut(s)	44, 247
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	75, 145
BseMI	GCAATG	2 cut(s)	87, 132
BseNI	ACTGG	2 cut(s)	50, 214
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	3 cut(s)	49, 279, 354
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	75, 145
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	49, 279, 354
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	192, 253, 301
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	3 cut(s)	49, 279, 354
BspLI	GGNNCC	3 cut(s)	29, 66, 353
BsrDI	GCAATG	2 cut(s)	87, 132
BsrI	ACTGG	2 cut(s)	50, 214
BssECI	CCNNGG	2 cut(s)	44, 247
BssMI	GATC	3 cut(s)	192, 253, 301
Bst2UI	CCWGG	3 cut(s)	21, 45, 249
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	3 cut(s)	195, 256, 304
BstMBI	GATC	3 cut(s)	192, 253, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	3 cut(s)	21, 45, 249
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	4 cut(s)	19, 43, 60, 247
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	49, 279, 354
BtsCI	GGATG	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	47, 352
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	4 cut(s)	49, 116, 279, 354
CviKI_1	RGCY	4 cut(s)	49, 116, 279, 354
CviQI	GTAC	1 cut(s)	207
DpnI	GATC	3 cut(s)	194, 255, 303
DpnII	GATC	3 cut(s)	192, 253, 301
EaeI	YGGCCR	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	19, 43, 247
FaeI	CATG	1 cut(s)	219
FaiI	YATR	6 cut(s)	15, 105, 191, 203, 217, 369
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	2 cut(s)	96, 270
HaeIII	GGCC	3 cut(s)	49, 279, 354
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	1 cut(s)	219
HinfI	GANTC	1 cut(s)	375
HpaII	CCGG	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	100, 227
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	154, 166, 271
Hpy8I	GTNNAC	2 cut(s)	100, 227
HpyAV	CCTTC	2 cut(s)	18, 83
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	3 cut(s)	17, 215, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	192, 253, 301
Lsp1109I	GCAGC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	315
MalI	GATC	3 cut(s)	194, 255, 303
MboI	GATC	3 cut(s)	192, 253, 301
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	2 cut(s)	281, 319
MluNI	TGGCCA	1 cut(s)	279
Mox20I	TGGCCA	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	4 cut(s)	21, 45, 62, 249
MvaI	CCWGG	3 cut(s)	21, 45, 249
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	3 cut(s)	192, 253, 301
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	3 cut(s)	29, 66, 353
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	375
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	312
PshAI	GACNNNNGTC	1 cut(s)	134
Psp6I	CCWGG	3 cut(s)	19, 43, 247
PspGI	CCWGG	3 cut(s)	19, 43, 247
PspN4I	GGNNCC	3 cut(s)	29, 66, 353
PspPI	GGNCC	2 cut(s)	47, 352
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	3 cut(s)	192, 253, 301
Sau96I	GGNCC	2 cut(s)	47, 352
ScrFI	CCNGG	4 cut(s)	21, 45, 62, 249
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	3 cut(s)	118, 208, 318
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	281, 319
SsiI	CCGC	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	19, 43, 60, 247
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	330
TasI	AATT	2 cut(s)	281, 319
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.