Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Reverse (-)

48021216 .. 48025571

Gene Structure 4356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG373200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGGTTTGCAGCCGAGGGCCGTGGAAGCTGCAAGAGTGGAAAAATGGACAATGTTTACGCACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCGGTCAATATCCCGGAACCCATCCTTCGGGCAATGAACAGAAACAATGAGGACTATCGTTCTCCAGCTGTTCCAGCAATGACAAAAGTCCTGCTCGAGGATGTCAAGAAGATTTTCAAGACTACTACCGGAACTCCATTTATGTTCCCTACCACAGGTACTGGTGCATGGGAGAGTGCACTTACAAATACATTGTCCCCTGGAGATCGGATTGTATCTTTCCTGATTGGCCAGTTCAGTTTGCTGTGGATTGATCAGCAGCAGCGCCTTAATTTCAAGGTCGATGTTGTGGAAAGTGACTGGGGCCAAGGTGCCAACCTTGAAATTCTGGCATCAAAAATTGCCGAAGACACTGCGCACACTATAAAGGCAGTATGCATTGTTCACAATGAAACGGCAACTGGAGTTACCAATAACTTGGCTACAGTGAGAAAAATACTTGACCACTACAGGCATCCGGCTCTCTTTCTTGTTGATGGAGTGTCTTCCATATGTGCTCTGGATTTCCGTATGGATGAATGGGGAGTAGATGTAGCCTTAACTGGCTCCCAGAAAGCTCTTTCCCTTCCCACTGGCATAGGGATTGTCTGTGCAAGCCCCAAAGCTCTCGAGGCATCCAAAACCGCAAAGTCAGTAAGAGTTTTCTTTGACTGGAATGATTACTTGAAGTTCTATAAGCTGGGCACATATTGGCCATACACACCTTCCATTCAGTTGCTATATGGGCTGCGAGCAGCTCTTGATCTTCTGTTTGAGGAAGGACTTGACAATGTGATTGCAAGACATAGCCGTTTGGGCAAAGCAACAAGGTACGCACCAGTTTTATCCGATTTCATCCACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

312

Amino Acids

34.41

Weight (kDa)

7.69

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	64 - 298	1.4e-22	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	404
AciI	CCGC	1 cut(s)	717
AcoI	YGGCCR	2 cut(s)	322, 785
AcsI	RAATTY	1 cut(s)	417
AfaI	GTAC	2 cut(s)	253, 905
AfiI	CCNNNNNNNGG	3 cut(s)	120, 190, 248
AgsI	TTSAA	4 cut(s)	211, 370, 416, 760
AjnI	CCWGG	3 cut(s)	64, 88, 292
AluBI	AGCT	6 cut(s)	30, 161, 650, 698, 772, 830
AluI	AGCT	6 cut(s)	30, 161, 650, 698, 772, 830
Alw21I	GWGCWC	2 cut(s)	274, 592
Alw44I	GTGCAC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	2 cut(s)	188, 701
AoxI	GGCC	5 cut(s)	19, 92, 322, 397, 785
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	6 cut(s)	11, 30, 352, 355, 820, 827
ApoI	RAATTY	1 cut(s)	417
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	360, 451
AspS9I	GGNCC	3 cut(s)	19, 92, 397
AsuC2I	CCSGG	1 cut(s)	107
AvaI	CYCGRG	2 cut(s)	188, 701
BaeGI	GKGCMC	2 cut(s)	274, 779
BalI	TGGCCA	2 cut(s)	324, 787
BanI	GGYRCC	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	447, 570
Bbv12I	GWGCWC	2 cut(s)	274, 592
BbvI	GCAGC	6 cut(s)	17, 23, 364, 367, 807, 839
BccI	CCATC	3 cut(s)	84, 122, 563
BceAI	ACGGC	3 cut(s)	6, 504, 867
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciT130I	CCWGG	3 cut(s)	66, 90, 294
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	107
BfmI	CTRYAG	2 cut(s)	516, 541
BfoI	RGCGCY	1 cut(s)	361
BglI	GCCNNNNNGGC	1 cut(s)	888
BisI	GCNGC	6 cut(s)	12, 31, 353, 356, 821, 828
BlsI	GCNGC	6 cut(s)	13, 32, 354, 357, 822, 829
Bme1390I	CCNGG	4 cut(s)	66, 90, 107, 294
BmeT110I	CYCGRG	2 cut(s)	188, 701
BmgT120I	GGNCC	3 cut(s)	19, 92, 397
BmiI	GGNNCC	5 cut(s)	74, 111, 398, 406, 640
BmrFI	CCNGG	4 cut(s)	66, 90, 107, 294
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	3 cut(s)	434, 556, 716
BmuI	ACTGGG	1 cut(s)	403
BoxI	GACNNNNGTC	1 cut(s)	179
BpiI	GAAGAC	2 cut(s)	447, 570
BpmI	CTGGAG	3 cut(s)	141, 315, 516
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	15, 22, 89, 292, 400
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 609, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 190, 248
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	8 cut(s)	259, 325, 398, 499, 640, 670, 749, 911
Bse3DI	GCAATG	2 cut(s)	132, 177
BseBI	CCWGG	3 cut(s)	66, 90, 294
BseDI	CCNNGG	5 cut(s)	15, 22, 89, 292, 400
BseGI	GGATG	6 cut(s)	114, 199, 547, 613, 707, 927
BseLI	CCNNNNNNNGG	3 cut(s)	120, 190, 248
BseMI	GCAATG	2 cut(s)	132, 177
BseNI	ACTGG	8 cut(s)	259, 325, 398, 499, 640, 670, 749, 911
BseSI	GKGCMC	2 cut(s)	274, 779
BseXI	GCAGC	6 cut(s)	17, 23, 364, 367, 807, 839
BseYI	CCCAGC	1 cut(s)	772
BshFI	GGCC	5 cut(s)	21, 94, 324, 399, 787
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	274, 592
BsiHKCI	CYCGRG	2 cut(s)	188, 701
BsiSI	CCGG	4 cut(s)	95, 107, 222, 551
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	3 cut(s)	120, 190, 248
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	5 cut(s)	21, 94, 324, 399, 787
BsoBI	CYCGRG	2 cut(s)	188, 701
Bsp1286I	GDGCHC	3 cut(s)	274, 592, 779
Bsp143I	GATC	3 cut(s)	298, 346, 835
BspACI	CCGC	1 cut(s)	717
BspANI	GGCC	5 cut(s)	21, 94, 324, 399, 787
BspLI	GGNNCC	5 cut(s)	74, 111, 398, 406, 640
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	2 cut(s)	132, 177
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	8 cut(s)	259, 325, 398, 499, 640, 670, 749, 911
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	5 cut(s)	15, 22, 89, 292, 400
BssMI	GATC	3 cut(s)	298, 346, 835
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	3 cut(s)	66, 90, 294
Bst4CI	ACNGT	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	688, 825
BstDSI	CCRYGG	1 cut(s)	22
BstENI	CCTNNNNNAGG	2 cut(s)	188, 246
BstF5I	GGATG	6 cut(s)	114, 199, 547, 613, 707, 927
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	360, 451
BstKTI	GATC	3 cut(s)	301, 349, 838
BstMBI	GATC	3 cut(s)	298, 346, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 167, 704, 817, 888
BstNI	CCWGG	3 cut(s)	66, 90, 294
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	64, 88, 105, 292
BstSFI	CTRYAG	2 cut(s)	516, 541
BstSLI	GKGCMC	2 cut(s)	274, 779
BstV1I	GCAGC	6 cut(s)	17, 23, 364, 367, 807, 839
BstV2I	GAAGAC	2 cut(s)	447, 570
BstXI	CCANNNNNNTGG	1 cut(s)	511
BsuRI	GGCC	5 cut(s)	21, 94, 324, 399, 787
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	6 cut(s)	114, 199, 547, 613, 707, 927
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	444, 525, 663
Cac8I	GCNNGC	2 cut(s)	688, 825
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	2 cut(s)	360, 451
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	19, 92, 397
Csp6I	GTAC	2 cut(s)	252, 904
CviAII	CATG	1 cut(s)	261
CviQI	GTAC	2 cut(s)	252, 904
DpnI	GATC	3 cut(s)	300, 348, 837
DpnII	GATC	3 cut(s)	298, 346, 835
EaeI	YGGCCR	2 cut(s)	322, 785
Eco130I	CCWWGG	1 cut(s)	400
Eco88I	CYCGRG	2 cut(s)	188, 701
EcoNI	CCTNNNNNAGG	2 cut(s)	188, 246
EcoRII	CCWGG	3 cut(s)	64, 88, 292
EcoT14I	CCWWGG	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	1 cut(s)	264
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	260
FauNDI	CATATG	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	6 cut(s)	12, 31, 353, 356, 821, 828
FokI	GGATG	6 cut(s)	101, 206, 534, 620, 694, 914
Fsp4HI	GCNGC	6 cut(s)	12, 31, 353, 356, 821, 828
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	2 cut(s)	359, 450
GluI	GCNGC	6 cut(s)	12, 31, 353, 356, 821, 828
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	3 cut(s)	141, 315, 516
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	5 cut(s)	21, 94, 324, 399, 787
HapII	CCGG	4 cut(s)	95, 107, 222, 551
HhaI	GCGC	2 cut(s)	360, 451
Hin1II	CATG	1 cut(s)	264
Hin6I	GCGC	2 cut(s)	358, 449
HinP1I	GCGC	2 cut(s)	358, 449
HpaII	CCGG	4 cut(s)	95, 107, 222, 551
Hpy166II	GTNNAC	3 cut(s)	58, 272, 478
Hpy188I	TCNGA	3 cut(s)	303, 922, 938
Hpy188III	TCNNGA	6 cut(s)	199, 211, 316, 593, 701, 833
Hpy8I	GTNNAC	3 cut(s)	58, 272, 478
HpyAV	CCTTC	5 cut(s)	63, 128, 668, 807, 845
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	7 cut(s)	11, 33, 260, 272, 471, 686, 872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 167, 704, 817, 888
Hsp92II	CATG	1 cut(s)	264
HspAI	GCGC	2 cut(s)	358, 449
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	298, 346, 835
LmnI	GCTCC	1 cut(s)	644
Lsp1109I	GCAGC	6 cut(s)	17, 23, 364, 367, 807, 839
LweI	GCATC	3 cut(s)	434, 556, 716
MaeIII	GTNAC	2 cut(s)	389, 499
MalI	GATC	3 cut(s)	300, 348, 837
MboI	GATC	3 cut(s)	298, 346, 835
MboII	GAAGA	4 cut(s)	214, 452, 570, 830
MhlI	GDGCHC	3 cut(s)	274, 592, 779
MlsI	TGGCCA	2 cut(s)	324, 787
MluCI	AATT	3 cut(s)	364, 417, 432
MluNI	TGGCCA	2 cut(s)	324, 787
MnlI	CCTC	5 cut(s)	10, 136, 184, 697, 841
Mox20I	TGGCCA	2 cut(s)	324, 787
Mph1103I	ATGCAT	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	206
MscI	TGGCCA	2 cut(s)	324, 787
MseI	TTAA	2 cut(s)	363, 632
Msp20I	TGGCCA	2 cut(s)	324, 787
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	4 cut(s)	95, 107, 222, 551
MspR9I	CCNGG	4 cut(s)	66, 90, 107, 294
MvaI	CCWGG	3 cut(s)	66, 90, 294
MwoI	GCNNNNNNNGC	5 cut(s)	27, 167, 704, 817, 888
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	3 cut(s)	298, 346, 835
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	5 cut(s)	74, 111, 398, 406, 640
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	389
NsbI	TGCGCA	1 cut(s)	450
NsiI	ATGCAT	1 cut(s)	473
PaeR7I	CTCGAG	2 cut(s)	188, 701
PdmI	GAANNNNTTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	6 cut(s)	13, 32, 354, 357, 822, 829
PshAI	GACNNNNGTC	1 cut(s)	179
Psp6I	CCWGG	3 cut(s)	64, 88, 292
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	3 cut(s)	64, 88, 292
PspN4I	GGNNCC	5 cut(s)	74, 111, 398, 406, 640
PspPI	GGNCC	3 cut(s)	19, 92, 397
PspXI	VCTCGAGB	1 cut(s)	188
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
PstNI	CAGNNNCTG	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	253, 905
RsaNI	GTAC	2 cut(s)	252, 904
SaqAI	TTAA	2 cut(s)	363, 632
SatI	GCNGC	6 cut(s)	12, 31, 353, 356, 821, 828
Sau3AI	GATC	3 cut(s)	298, 346, 835
Sau96I	GGNCC	3 cut(s)	19, 92, 397
ScrFI	CCNGG	4 cut(s)	66, 90, 107, 294
SduI	GDGCHC	3 cut(s)	274, 592, 779
SfaNI	GCATC	3 cut(s)	434, 556, 716
SfcI	CTRYAG	2 cut(s)	516, 541
Sfr274I	CTCGAG	2 cut(s)	188, 701
SlaI	CTCGAG	2 cut(s)	188, 701
SmlI	CTYRAG	2 cut(s)	188, 701
SmoI	CTYRAG	2 cut(s)	188, 701
Sse9I	AATT	3 cut(s)	364, 417, 432
SsiI	CCGC	1 cut(s)	717
StyD4I	CCNGG	4 cut(s)	64, 88, 105, 292
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	189, 375, 702
TasI	AATT	3 cut(s)	364, 417, 432
Tru1I	TTAA	2 cut(s)	363, 632
Tru9I	TTAA	2 cut(s)	363, 632
TscAI	CASTG	3 cut(s)	451, 525, 670
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	6 cut(s)	11, 30, 352, 355, 820, 827
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	143, 498, 624, 916
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	3 cut(s)	451, 525, 670
VneI	GTGCAC	1 cut(s)	270
XagI	CCTNNNNNAGG	2 cut(s)	188, 246
XapI	RAATTY	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XhoI	CTCGAG	2 cut(s)	188, 701
XmnI	GAANNNNTTC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.