Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Reverse (-)

14492556 .. 14496059

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGACAATGTTTACACACCAGGAAGGAACCATCTCTTTGTTCCAGGGGCAGTCAATATCCCGGAAACCGTCATTCGGGCAATGAACAGAAACAATGAGGACTATGGTTCTCCAGCTGTTACAGCAATGACAAAAGTCCTGCTCGAGGATGTCAAGAAGATTTTCAAGACTACTACCGGAACTCCATTTATGATCTCTACCACAGATCGGATTGTATCTTTCCTAATTGGCCAATTCAGTTTGCTGTGGATTGATCAACGGCTGCGTGCCAACCTTGACATTCTGGCATCAAAAAGTGTCGATGCCACTGCACACACTATAAAGGCAGTATGCATTGTTCACAATGAAACGGCAACTGGAGTTACCAATAACTTGGCTACAGTGAGAAAAATACTTGACCACTACAGGCATCCGGCTTTCTTTCTTGTTGATGGAATGTCTTCCACATGTGCCCTGTATTTCCGTACAGATGAATGGGGAGTAGATGTAGCCTTAACTGGCTCCCAGAAAGCTCTCTCCCTTCCCACTGGCATAGGGATTGTGTGTGCAAGCCCCAAAGCTCTTTCCCGCCCATTTAGTACTTCTTCAACTCCTAATCCTGGATATAAGACAGTGAGGTATGCTTTATGTGTGCTATTAGTTAAGCTTTCGGAGTGGGTGTTAATGACAAGGCCTGCCATTGAGGAATGTGGTTGTATTGGACAAATCATGGTCATGAGAAAGATGTGGTTTTGGGAAGAAACAGACAGCGAGGAGGGAAGAGAGAGTAAGAGCATCTCCAATGGGTTTGTTATTTGGTCTTGGTCAAATTTGAATTTGACATATGACATGGCAAATTTGATTTTAAAGCTACAAAGCCCTTATCTTGGTATCAATAACTTGTCTCAAGAAACCGTTCCCTTGCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

303

Amino Acids

33.67

Weight (kDa)

7.61

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	101 - 189	3.9e-11	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	808, 814, 835
AfaI	GTAC	2 cut(s)	466, 580
AfiI	CCNNNNNNNGG	5 cut(s)	75, 145, 207, 599, 866
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	166, 588, 814
AjnI	CCWGG	3 cut(s)	19, 43, 598
AluBI	AGCT	5 cut(s)	116, 512, 560, 646, 850
AluI	AGCT	5 cut(s)	116, 512, 560, 646, 850
Alw26I	GTCTC	1 cut(s)	888
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	2 cut(s)	229, 671
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	3 cut(s)	808, 814, 835
Asp700I	GAANNNNTTC	3 cut(s)	161, 439, 894
AsuC2I	CCSGG	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	2 cut(s)	39, 425
BceAI	ACGGC	2 cut(s)	275, 366
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	3 cut(s)	21, 45, 600
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	888
BfmI	CTRYAG	2 cut(s)	378, 403
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	4 cut(s)	21, 45, 62, 600
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	29, 502
BmrFI	CCNGG	4 cut(s)	21, 45, 62, 600
BmsI	GCATC	4 cut(s)	292, 296, 418, 783
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	2 cut(s)	96, 378
BpuEI	CTTGAG	1 cut(s)	870
BpuMI	CCSGG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	6 cut(s)	166, 196, 471, 501, 644, 674
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 145, 207, 599, 866
Bse1I	ACTGG	3 cut(s)	361, 502, 532
Bse3DI	GCAATG	2 cut(s)	87, 132
BseBI	CCWGG	3 cut(s)	21, 45, 600
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	154, 409
BseLI	CCNNNNNNNGG	5 cut(s)	75, 145, 207, 599, 866
BseMI	GCAATG	2 cut(s)	87, 132
BseNI	ACTGG	3 cut(s)	361, 502, 532
BseRI	GAGGAG	1 cut(s)	767
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	231, 673
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	3 cut(s)	62, 177, 413
BslI	CCNNNNNNNGG	5 cut(s)	75, 145, 207, 599, 866
BsmAI	GTCTC	1 cut(s)	888
BsnI	GGCC	2 cut(s)	231, 673
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	192, 205, 253
BspACI	CCGC	1 cut(s)	568
BspANI	GGCC	2 cut(s)	231, 673
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	29, 502
BsrDI	GCAATG	2 cut(s)	87, 132
BsrI	ACTGG	3 cut(s)	361, 502, 532
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	192, 205, 253
Bst2UI	CCWGG	3 cut(s)	21, 45, 600
Bst4CI	ACNGT	4 cut(s)	70, 382, 613, 895
Bst6I	CTCTTC	1 cut(s)	754
BstC8I	GCNNGC	3 cut(s)	267, 550, 675
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	154, 409
BstKTI	GATC	3 cut(s)	195, 208, 256
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	3 cut(s)	192, 205, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	3 cut(s)	21, 45, 600
BstNSI	RCATGY	1 cut(s)	450
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	4 cut(s)	19, 43, 60, 598
BstSFI	CTRYAG	2 cut(s)	378, 403
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	231, 673
BtsCI	GGATG	2 cut(s)	154, 409
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	4 cut(s)	306, 387, 525, 618
Cac8I	GCNNGC	3 cut(s)	267, 550, 675
CciI	TCATGA	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	465, 579
CviAII	CATG	4 cut(s)	447, 709, 715, 829
CviQI	GTAC	2 cut(s)	465, 579
DpnI	GATC	3 cut(s)	194, 207, 255
DpnII	GATC	3 cut(s)	192, 205, 253
DraI	TTTAAA	1 cut(s)	846
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
Eco147I	AGGCCT	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	19, 43, 598
EcoT22I	ATGCAT	1 cut(s)	335
FaeI	CATG	4 cut(s)	450, 712, 718, 832
FatI	CATG	4 cut(s)	446, 708, 714, 828
FauI	CCCGC	1 cut(s)	575
FauNDI	CATATG	1 cut(s)	823
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	2 cut(s)	161, 396
Fsp4HI	GCNGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	263
GsuI	CTGGAG	2 cut(s)	96, 378
HaeIII	GGCC	2 cut(s)	231, 673
HapII	CCGG	3 cut(s)	62, 177, 413
Hin1II	CATG	4 cut(s)	450, 712, 718, 832
HindIII	AAGCTT	1 cut(s)	644
HpaII	CCGG	3 cut(s)	62, 177, 413
Hpy166II	GTNNAC	2 cut(s)	13, 340
Hpy188I	TCNGA	2 cut(s)	210, 652
Hpy188III	TCNNGA	4 cut(s)	154, 166, 715, 887
Hpy8I	GTNNAC	2 cut(s)	13, 340
HpyAV	CCTTC	2 cut(s)	18, 530
HpyCH4III	ACNGT	4 cut(s)	70, 382, 613, 895
HpyCH4V	TGCA	3 cut(s)	311, 333, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	450, 712, 718, 832
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	192, 205, 253
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	1 cut(s)	249
LweI	GCATC	4 cut(s)	292, 296, 418, 783
MaeIII	GTNAC	2 cut(s)	118, 361
MalI	GATC	3 cut(s)	194, 207, 255
MboI	GATC	3 cut(s)	192, 205, 253
MboII	GAAGA	5 cut(s)	169, 432, 576, 749, 771
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	5 cut(s)	225, 233, 808, 814, 835
MluNI	TGGCCA	1 cut(s)	231
MnlI	CCTC	6 cut(s)	91, 139, 609, 676, 745, 748
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	335
MroXI	GAANNNNTTC	3 cut(s)	161, 439, 894
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	4 cut(s)	494, 642, 662, 845
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	62, 177, 413
MspR9I	CCNGG	4 cut(s)	21, 45, 62, 600
MvaI	CCWGG	3 cut(s)	21, 45, 600
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	823
NdeII	GATC	3 cut(s)	192, 205, 253
NlaIII	CATG	4 cut(s)	450, 712, 718, 832
NlaIV	GGNNCC	2 cut(s)	29, 502
NsiI	ATGCAT	1 cut(s)	335
NspI	RCATGY	1 cut(s)	450
PaeR7I	CTCGAG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	714
PceI	AGGCCT	1 cut(s)	673
PciI	ACATGT	1 cut(s)	446
PdmI	GAANNNNTTC	3 cut(s)	161, 439, 894
PfoI	TCCNGGA	2 cut(s)	60, 598
PkrI	GCNGC	1 cut(s)	264
PscI	ACATGT	1 cut(s)	446
PshAI	GACNNNNGTC	1 cut(s)	134
Psp6I	CCWGG	3 cut(s)	19, 43, 598
PspGI	CCWGG	3 cut(s)	19, 43, 598
PspN4I	GGNNCC	2 cut(s)	29, 502
PspXI	VCTCGAGB	1 cut(s)	143
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	466, 580
RsaNI	GTAC	2 cut(s)	465, 579
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	4 cut(s)	494, 642, 662, 845
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	3 cut(s)	192, 205, 253
ScaI	AGTACT	1 cut(s)	580
ScrFI	CCNGG	4 cut(s)	21, 45, 62, 600
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	7 cut(s)	118, 276, 514, 562, 620, 648, 852
SfaNI	GCATC	4 cut(s)	292, 296, 418, 783
SfcI	CTRYAG	2 cut(s)	378, 403
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	2 cut(s)	143, 885
SmoI	CTYRAG	2 cut(s)	143, 885
Sse9I	AATT	5 cut(s)	225, 233, 808, 814, 835
SseBI	AGGCCT	1 cut(s)	673
SsiI	CCGC	1 cut(s)	568
StuI	AGGCCT	1 cut(s)	673
StyD4I	CCNGG	4 cut(s)	19, 43, 60, 598
TaaI	ACNGT	4 cut(s)	70, 382, 613, 895
TaqI	TCGA	2 cut(s)	144, 300
TasI	AATT	5 cut(s)	225, 233, 808, 814, 835
TatI	WGTACW	1 cut(s)	578
Tru1I	TTAA	4 cut(s)	494, 642, 662, 845
Tru9I	TTAA	4 cut(s)	494, 642, 662, 845
TscAI	CASTG	4 cut(s)	313, 387, 532, 618
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	98, 360, 486
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	4 cut(s)	313, 387, 532, 618
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	3 cut(s)	808, 814, 835
XceI	RCATGY	1 cut(s)	450
XhoI	CTCGAG	1 cut(s)	143
XmnI	GAANNNNTTC	3 cut(s)	161, 439, 894
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.