Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Forward (+)

18517641 .. 18522605

Gene Structure 4965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G258800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGACTATGTTTATGGACCCGGAAGGAACCATCTCTTTGTTCCAGGCCCGGTCAATATTCCGGAGCCAGTCCTTCGGGCTATGAACAGAAACAATGAGGATTATCGTTCTCCTGCTGTTCCAGCAATGACAAAAATTCTGCTGGAGGATGTGAAGAAGATTTTCAAGACTACAACTGGAACTTCATTTATGATCCCTACCACAGGTACTGGTGCTTGGGAGAGTGCACTTACAAATACATTATCTCCTGGAGACCGGATTGTATCTTTCCTGATTGGCCAATTCAGTTTGCTATGGATTGATCAGCAGCAGCGCCTTAATTTCAAGGTGGATGTTGTAGAAAGTGAATGGGGCCAAGGTGCCAACCTTGACATTCTGGCATCAAAACTTGCAGAAGATACTGCGCACACTATAAAAGCAATATGCATTGTTCACAATGAAACAGCCACTGGAGTTACTAATAACTTAGCTCAAGTGAGAAGAATACTTGATGAGTACAGACATCCAGCTCTCTTTCTTGTTGATGGAGTGTCTTCCATATGTGCTCTTGACTTCCGTATGGATGAATGGGGAGTAGATGTAGCTTTAACTGGTTCTCAGAAAGCTCTTTCTCTCCCCACTGGCATTGGGATTGTGTGTGCAAGCCCAAAAGCTCTAGAGGCATCTAAAACTGCAAAGTCAGTAAGAGTTTTCTTTGACTGGAATGATTACTTGAAGTTCTATAAGTTGGGAACATACTGGCCATATACCCCTTCCATCCAGTTGCTGTATGGACTGCGCACAGCACTTGATCTTATTTTTGAGGAAGGACTTGACAACGTGATTGCAAGACACAGCCGTTTGGGAAAAGCAACAAGGCTTGCTGTGGAGGCATGGGGCTTGAAGAACTGCACCCAAAGTGAGGAATGGTTCAGTGACACAGTGACAGCTGTGCTGGTTCCTCCATACATTGACAGTACAGAAATTGTGAGAAGGGCATGGAAAAGATATAATTTGAGCTTAGGCCTAGGCCTAAACAAAATAGCTGGCAAGGTTTTCAGAATAGGGCATCTTGGCAATCTGAATGAGTTGCAATTGCTGGGTTGTCTTGCTGGTGTCGAGATGGTACTTAGGGATGTGGGCTACCCTGTTAAGCTAGGAAGCGGAGTTGCAGCTGCTAGTGCATACTTTCAGAACAACACCCCTCTGATCCCTTCCAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

402

Amino Acids

44.3

Weight (kDa)

7.63

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	405, 779
AccB1I	GGYRCC	1 cut(s)	359
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	1 cut(s)	1143
AclWI	GGATC	2 cut(s)	187, 1183
AcoI	YGGCCR	2 cut(s)	277, 740
AcsI	RAATTY	1 cut(s)	135
AfaI	GTAC	4 cut(s)	208, 497, 958, 1107
AfiI	CCNNNNNNNGG	2 cut(s)	203, 901
AgsI	TTSAA	4 cut(s)	166, 325, 715, 883
AjnI	CCWGG	3 cut(s)	43, 247, 1196
Alw21I	GWGCWC	2 cut(s)	229, 547
Alw26I	GTCTC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	187, 1183
AlwNI	CAGNNNCTG	3 cut(s)	209, 449, 766
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	6 cut(s)	46, 277, 352, 740, 1003, 1009
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	4 cut(s)	307, 310, 1151, 1154
ApoI	RAATTY	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	1006
AspLEI	GCGC	3 cut(s)	315, 406, 780
AspS9I	GGNCC	3 cut(s)	17, 47, 352
AsuC2I	CCSGG	2 cut(s)	21, 50
AvaII	GGWCC	1 cut(s)	17
AvrII	CCTAGG	1 cut(s)	1006
BaeGI	GKGCMC	1 cut(s)	229
BalI	TGGCCA	2 cut(s)	279, 742
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	229, 547
BbvI	GCAGC	4 cut(s)	319, 322, 1141, 1163
BccI	CCATC	4 cut(s)	39, 518, 764, 1096
BceAI	ACGGC	1 cut(s)	822
BciT130I	CCWGG	3 cut(s)	45, 249, 1198
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	21, 50
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	4 cut(s)	656, 1007, 1136, 1158
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	4 cut(s)	308, 311, 1152, 1155
BlnI	CCTAGG	1 cut(s)	1006
BlsI	GCNGC	4 cut(s)	309, 312, 1153, 1156
Bme1390I	CCNGG	5 cut(s)	21, 45, 50, 249, 1198
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	17, 47, 352
BmiI	GGNNCC	6 cut(s)	19, 29, 66, 353, 361, 939
BmrFI	CCNGG	5 cut(s)	21, 45, 50, 249, 1198
BmsI	GCATC	3 cut(s)	389, 671, 1057
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	3 cut(s)	164, 270, 471
Bpu10I	CCTNAGC	1 cut(s)	1000
BpuEI	CTTGAG	1 cut(s)	456
BpuMI	CCSGG	2 cut(s)	21, 50
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	355, 1006
BsaWI	WCCGGW	2 cut(s)	61, 255
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 564, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 901
Bse1I	ACTGG	9 cut(s)	68, 181, 214, 454, 595, 625, 704, 743, 760
Bse3DI	GCAATG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	3 cut(s)	45, 249, 1198
BseDI	CCNNGG	2 cut(s)	355, 1006
BseGI	GGATG	6 cut(s)	154, 337, 502, 568, 756, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	203, 901
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	9 cut(s)	68, 181, 214, 454, 595, 625, 704, 743, 760
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	4 cut(s)	319, 322, 1141, 1163
BseYI	CCCAGC	1 cut(s)	1078
BsgI	GTGCAG	1 cut(s)	874
BshFI	GGCC	6 cut(s)	48, 279, 354, 742, 1005, 1011
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	229, 547
BsiSI	CCGG	4 cut(s)	21, 50, 62, 256
BslI	CCNNNNNNNGG	2 cut(s)	203, 901
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	6 cut(s)	48, 279, 354, 742, 1005, 1011
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	229, 547
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	4 cut(s)	192, 301, 790, 1188
BspACI	CCGC	1 cut(s)	1143
BspANI	GGCC	6 cut(s)	48, 279, 354, 742, 1005, 1011
BspCNI	CTCAG	1 cut(s)	610
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	6 cut(s)	19, 29, 66, 353, 361, 939
BspPI	GGATC	2 cut(s)	187, 1183
BspT107I	GGYRCC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	9 cut(s)	68, 181, 214, 454, 595, 625, 704, 743, 760
BssECI	CCNNGG	2 cut(s)	355, 1006
BssMI	GATC	4 cut(s)	192, 301, 790, 1188
BssT1I	CCWWGG	2 cut(s)	355, 1006
Bst2UI	CCWGG	3 cut(s)	45, 249, 1198
Bst4CI	ACNGT	2 cut(s)	922, 956
BstC8I	GCNNGC	3 cut(s)	643, 861, 1027
BstDEI	CTNAG	4 cut(s)	466, 597, 1000, 1109
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstF5I	GGATG	6 cut(s)	154, 337, 502, 568, 756, 1120
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	3 cut(s)	315, 406, 780
BstKTI	GATC	4 cut(s)	195, 304, 793, 1191
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	4 cut(s)	192, 301, 790, 1188
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 659, 869, 1160
BstNI	CCWGG	3 cut(s)	45, 249, 1198
BstSCI	CCNGG	5 cut(s)	19, 43, 48, 247, 1196
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	4 cut(s)	319, 322, 1141, 1163
BstV2I	GAAGAC	1 cut(s)	525
BsuRI	GGCC	6 cut(s)	48, 279, 354, 742, 1005, 1011
BtsCI	GGATG	6 cut(s)	154, 337, 502, 568, 756, 1120
BtsIMutI	CAGTG	4 cut(s)	447, 618, 919, 927
Cac8I	GCNNGC	3 cut(s)	643, 861, 1027
CaiI	CAGNNNCTG	3 cut(s)	209, 449, 766
CfoI	GCGC	3 cut(s)	315, 406, 780
Cfr13I	GGNCC	3 cut(s)	17, 47, 352
Csp6I	GTAC	4 cut(s)	207, 496, 957, 1106
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	2 cut(s)	873, 978
CviQI	GTAC	4 cut(s)	207, 496, 957, 1106
DdeI	CTNAG	4 cut(s)	466, 597, 1000, 1109
DpnI	GATC	4 cut(s)	194, 303, 792, 1190
DpnII	GATC	4 cut(s)	192, 301, 790, 1188
EaeI	YGGCCR	2 cut(s)	277, 740
Eco130I	CCWWGG	2 cut(s)	355, 1006
Eco147I	AGGCCT	2 cut(s)	1005, 1011
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoRII	CCWGG	3 cut(s)	43, 247, 1196
EcoT14I	CCWWGG	2 cut(s)	355, 1006
EcoT22I	ATGCAT	1 cut(s)	428
ErhI	CCWWGG	2 cut(s)	355, 1006
FaeI	CATG	2 cut(s)	876, 981
FatI	CATG	2 cut(s)	872, 977
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	308, 311, 1152, 1155
FokI	GGATG	6 cut(s)	161, 344, 489, 575, 743, 1127
Fsp4HI	GCNGC	4 cut(s)	308, 311, 1152, 1155
FspBI	CTAG	4 cut(s)	656, 1007, 1136, 1158
FspI	TGCGCA	2 cut(s)	405, 779
GlaI	GCGC	3 cut(s)	314, 405, 779
GluI	GCNGC	4 cut(s)	308, 311, 1152, 1155
GsaI	CCCAGC	1 cut(s)	1082
GsuI	CTGGAG	3 cut(s)	164, 270, 471
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	6 cut(s)	48, 279, 354, 742, 1005, 1011
HapII	CCGG	4 cut(s)	21, 50, 62, 256
HhaI	GCGC	3 cut(s)	315, 406, 780
Hin1II	CATG	2 cut(s)	876, 981
Hin6I	GCGC	3 cut(s)	313, 404, 778
HinP1I	GCGC	3 cut(s)	313, 404, 778
HpaII	CCGG	4 cut(s)	21, 50, 62, 256
Hpy166II	GTNNAC	2 cut(s)	227, 433
Hpy188I	TCNGA	5 cut(s)	600, 1040, 1062, 1173, 1188
Hpy188III	TCNNGA	6 cut(s)	62, 166, 271, 548, 656, 1099
Hpy8I	GTNNAC	2 cut(s)	227, 433
HpyAV	CCTTC	6 cut(s)	18, 83, 762, 800, 966, 1203
HpyCH4III	ACNGT	2 cut(s)	922, 956
HpyCH4IV	ACGT	1 cut(s)	819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 659, 869, 1160
HpyF3I	CTNAG	4 cut(s)	466, 597, 1000, 1109
HpySE526I	ACGT	1 cut(s)	819
Hsp92II	CATG	2 cut(s)	876, 981
HspAI	GCGC	3 cut(s)	313, 404, 778
Kpn2I	TCCGGA	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	192, 301, 790, 1188
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	4 cut(s)	319, 322, 1141, 1163
LweI	GCATC	3 cut(s)	389, 671, 1057
MaeI	CTAG	4 cut(s)	656, 1007, 1136, 1158
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	3 cut(s)	454, 914, 922
MalI	GATC	4 cut(s)	194, 303, 792, 1190
MboI	GATC	4 cut(s)	192, 301, 790, 1188
MboII	GAAGA	6 cut(s)	166, 169, 407, 492, 525, 895
MfeI	CAATTG	1 cut(s)	1073
MhlI	GDGCHC	2 cut(s)	229, 547
MlsI	TGGCCA	2 cut(s)	279, 742
MluCI	AATT	6 cut(s)	135, 281, 319, 963, 991, 1073
MluNI	TGGCCA	2 cut(s)	279, 742
MnlI	CCTC	8 cut(s)	91, 139, 652, 796, 862, 895, 951, 1194
Mox20I	TGGCCA	2 cut(s)	279, 742
Mph1103I	ATGCAT	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	2 cut(s)	279, 742
MseI	TTAA	3 cut(s)	318, 587, 1131
Msp20I	TGGCCA	2 cut(s)	279, 742
MspA1I	CMGCKG	2 cut(s)	929, 1154
MspI	CCGG	4 cut(s)	21, 50, 62, 256
MspR9I	CCNGG	5 cut(s)	21, 45, 50, 249, 1198
MunI	CAATTG	1 cut(s)	1073
MvaI	CCWGG	3 cut(s)	45, 249, 1198
MwoI	GCNNNNNNNGC	4 cut(s)	122, 659, 869, 1160
NciI	CCSGG	2 cut(s)	21, 50
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	4 cut(s)	192, 301, 790, 1188
NlaIII	CATG	2 cut(s)	876, 981
NlaIV	GGNNCC	6 cut(s)	19, 29, 66, 353, 361, 939
NmuCI	GTSAC	2 cut(s)	914, 922
NsbI	TGCGCA	2 cut(s)	405, 779
NsiI	ATGCAT	1 cut(s)	428
PceI	AGGCCT	2 cut(s)	1005, 1011
PdmI	GAANNNNTTC	1 cut(s)	161
PfoI	TCCNGGA	2 cut(s)	247, 1196
PkrI	GCNGC	4 cut(s)	309, 312, 1153, 1156
Psp6I	CCWGG	3 cut(s)	43, 247, 1196
PspFI	CCCAGC	1 cut(s)	1078
PspGI	CCWGG	3 cut(s)	43, 247, 1196
PspN4I	GGNNCC	6 cut(s)	19, 29, 66, 353, 361, 939
PspPI	GGNCC	3 cut(s)	17, 47, 352
PstNI	CAGNNNCTG	3 cut(s)	209, 449, 766
PvuII	CAGCTG	2 cut(s)	929, 1154
RsaI	GTAC	4 cut(s)	208, 497, 958, 1107
RsaNI	GTAC	4 cut(s)	207, 496, 957, 1106
SaqAI	TTAA	3 cut(s)	318, 587, 1131
SatI	GCNGC	4 cut(s)	308, 311, 1152, 1155
Sau3AI	GATC	4 cut(s)	192, 301, 790, 1188
Sau96I	GGNCC	3 cut(s)	17, 47, 352
ScrFI	CCNGG	5 cut(s)	21, 45, 50, 249, 1198
SduI	GDGCHC	2 cut(s)	229, 547
SfaNI	GCATC	3 cut(s)	389, 671, 1057
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	6 cut(s)	135, 281, 319, 963, 991, 1073
SseBI	AGGCCT	2 cut(s)	1005, 1011
SsiI	CCGC	1 cut(s)	1143
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	4 cut(s)	656, 1007, 1136, 1158
StuI	AGGCCT	2 cut(s)	1005, 1011
StyD4I	CCNGG	5 cut(s)	19, 43, 48, 247, 1196
StyI	CCWWGG	2 cut(s)	355, 1006
TaaI	ACNGT	2 cut(s)	922, 956
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	1 cut(s)	1098
TasI	AATT	6 cut(s)	135, 281, 319, 963, 991, 1073
TatI	WGTACW	2 cut(s)	495, 956
Tru1I	TTAA	3 cut(s)	318, 587, 1131
Tru9I	TTAA	3 cut(s)	318, 587, 1131
TscAI	CASTG	4 cut(s)	454, 625, 919, 927
TseFI	GTSAC	2 cut(s)	914, 922
TseI	GCWGC	4 cut(s)	307, 310, 1151, 1154
Tsp45I	GTSAC	2 cut(s)	914, 922
TspDTI	ATGAA	4 cut(s)	98, 174, 453, 579
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	4 cut(s)	454, 625, 919, 927
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmaJI	CCTAGG	1 cut(s)	1006
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	4 cut(s)	656, 1007, 1136, 1158
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.