Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 1 - 99 | 2.5e-26 | TIR domain |
| NB-ARC | PF00931 | 106 - 275 | 6.1e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 343 - 412 | 1.2e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 519 - 538 | 7.7e-08 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 551 - 694 | 2.7e-15 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 565 - 651 | 8.2e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 679 - 770 | 1.3e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1700 |
| AbsI | CCTCGAGG | 1 cut(s) | 2096 |
| Acc16I | TGCGCA | 1 cut(s) | 203 |
| Acc36I | ACCTGC | 1 cut(s) | 1700 |
| AccB1I | GGYRCC | 1 cut(s) | 375 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 785, 1235 |
| AccI | GTMKAC | 1 cut(s) | 3004 |
| AccII | CGCG | 1 cut(s) | 908 |
| AciI | CCGC | 3 cut(s) | 2032, 3024, 3030 |
| AclI | AACGTT | 1 cut(s) | 994 |
| AcoI | YGGCCR | 2 cut(s) | 1062, 3358 |
| AcsI | RAATTY | 7 cut(s) | 83, 765, 1174, 1825, 2735, 2912, 3467 |
| AcuI | CTGAAG | 6 cut(s) | 876, 1707, 2225, 2366, 2438, 3617 |
| AfaI | GTAC | 6 cut(s) | 58, 1047, 1692, 3251, 3488, 3588 |
| AflII | CTTAAG | 4 cut(s) | 976, 1813, 2384, 2456 |
| AflIII | ACRYGT | 2 cut(s) | 1971, 2920 |
| AjiI | CACGTC | 2 cut(s) | 1033, 1537 |
| AjnI | CCWGG | 3 cut(s) | 778, 1645, 2526 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1482, 1496, 1514, 1528, 1793, 1825 |
| Alw21I | GWGCWC | 2 cut(s) | 706, 2571 |
| Alw26I | GTCTC | 6 cut(s) | 477, 2204, 2816, 3100, 3149, 3180 |
| Ama87I | CYCGRG | 1 cut(s) | 2096 |
| AoxI | GGCC | 3 cut(s) | 1062, 2864, 3358 |
| ApeKI | GCWGC | 2 cut(s) | 32, 611 |
| ApoI | RAATTY | 7 cut(s) | 83, 765, 1174, 1825, 2735, 2912, 3467 |
| AseI | ATTAAT | 1 cut(s) | 2235 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 497, 1494, 1508, 1620, 2007, 2841, 3422 |
| AspLEI | GCGC | 3 cut(s) | 204, 908, 1603 |
| AspS9I | GGNCC | 4 cut(s) | 296, 773, 1085, 2323 |
| AsuHPI | GGTGA | 3 cut(s) | 114, 2800, 3529 |
| AvaI | CYCGRG | 1 cut(s) | 2096 |
| AvaII | GGWCC | 4 cut(s) | 296, 773, 1085, 2323 |
| AxyI | CCTNAGG | 1 cut(s) | 2855 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3426, 3459 |
| BalI | TGGCCA | 1 cut(s) | 1064 |
| BamHI | GGATCC | 1 cut(s) | 454 |
| BanI | GGYRCC | 1 cut(s) | 375 |
| BanII | GRGCYC | 5 cut(s) | 706, 1369, 1982, 2571, 3307 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3265, 3297 |
| BauI | CACGAG | 1 cut(s) | 1958 |
| BbsI | GAAGAC | 3 cut(s) | 166, 490, 1434 |
| Bbv12I | GWGCWC | 2 cut(s) | 706, 2571 |
| BbvI | GCAGC | 2 cut(s) | 19, 598 |
| BccI | CCATC | 9 cut(s) | 691, 806, 1229, 1370, 2029, 2221, 2293, 2509, 2823 |
| BceAI | ACGGC | 2 cut(s) | 3222, 3345 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 274, 308 |
| BciT130I | CCWGG | 3 cut(s) | 780, 1647, 2528 |
| BciVI | GTATCC | 1 cut(s) | 595 |
| BcoDI | GTCTC | 6 cut(s) | 477, 2204, 2816, 3100, 3149, 3180 |
| BfmI | CTRYAG | 1 cut(s) | 901 |
| BfrI | CTTAAG | 4 cut(s) | 976, 1813, 2384, 2456 |
| BfuAI | ACCTGC | 1 cut(s) | 1700 |
| BfuI | GTATCC | 1 cut(s) | 595 |
| BisI | GCNGC | 2 cut(s) | 33, 612 |
| BlsI | GCNGC | 2 cut(s) | 34, 613 |
| BmcAI | AGTACT | 1 cut(s) | 1692 |
| Bme1390I | CCNGG | 3 cut(s) | 780, 1647, 2528 |
| Bme18I | GGWCC | 4 cut(s) | 296, 773, 1085, 2323 |
| BmeT110I | CYCGRG | 1 cut(s) | 2096 |
| BmgBI | CACGTC | 2 cut(s) | 1033, 1537 |
| BmgT120I | GGNCC | 4 cut(s) | 296, 773, 1085, 2323 |
| BmiI | GGNNCC | 5 cut(s) | 377, 456, 774, 1644, 1981 |
| BmrFI | CCNGG | 3 cut(s) | 780, 1647, 2528 |
| BmrI | ACTGGG | 1 cut(s) | 3225 |
| BmuI | ACTGGG | 1 cut(s) | 3225 |
| BpiI | GAAGAC | 3 cut(s) | 166, 490, 1434 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2342, 2374, 2414, 2446, 2630, 2662 |
| BpmI | CTGGAG | 3 cut(s) | 600, 762, 2549 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1361 |
| Bsa29I | ATCGAT | 2 cut(s) | 252, 290 |
| BsaAI | YACGTR | 1 cut(s) | 3438 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1103 |
| BsaI | GGTCTC | 1 cut(s) | 3180 |
| BsaJI | CCNNGG | 7 cut(s) | 19, 187, 779, 1059, 1355, 1646, 2981 |
| BsaWI | WCCGGW | 2 cut(s) | 479, 2785 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3470, 3500 |
| Bse1I | ACTGG | 2 cut(s) | 3042, 3231 |
| Bse21I | CCTNAGG | 1 cut(s) | 2855 |
| Bse3DI | GCAATG | 1 cut(s) | 1518 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1103 |
| BseBI | CCWGG | 3 cut(s) | 780, 1647, 2528 |
| BseCI | ATCGAT | 2 cut(s) | 252, 290 |
| BseDI | CCNNGG | 7 cut(s) | 19, 187, 779, 1059, 1355, 1646, 2981 |
| BseJI | GATNNNNATC | 1 cut(s) | 1103 |
| BseMI | GCAATG | 1 cut(s) | 1518 |
| BseMII | CTCAG | 8 cut(s) | 229, 1536, 1941, 2678, 2843, 2869, 2920, 3034 |
| BseNI | ACTGG | 2 cut(s) | 3042, 3231 |
| BseRI | GAGGAG | 3 cut(s) | 295, 2350, 2422 |
| BseXI | GCAGC | 2 cut(s) | 19, 598 |
| BseYI | CCCAGC | 1 cut(s) | 179 |
| Bsh1236I | CGCG | 1 cut(s) | 908 |
| Bsh1285I | CGRYCG | 1 cut(s) | 294 |
| BshFI | GGCC | 3 cut(s) | 1064, 2866, 3360 |
| BshNI | GGYRCC | 1 cut(s) | 375 |
| BshVI | ATCGAT | 2 cut(s) | 252, 290 |
| BsiEI | CGRYCG | 1 cut(s) | 294 |
| BsiHKAI | GWGCWC | 2 cut(s) | 706, 2571 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2096 |
| BsiSI | CCGG | 2 cut(s) | 480, 2786 |
| BslFI | GGGAC | 4 cut(s) | 37, 2836, 2839, 3393 |
| BsmAI | GTCTC | 6 cut(s) | 477, 2204, 2816, 3100, 3149, 3180 |
| BsmBI | CGTCTC | 1 cut(s) | 2816 |
| BsmFI | GGGAC | 4 cut(s) | 37, 2836, 2839, 3393 |
| BsmI | GAATGC | 4 cut(s) | 586, 2161, 2305, 2521 |
| BsnI | GGCC | 3 cut(s) | 1064, 2866, 3360 |
| Bso31I | GGTCTC | 1 cut(s) | 3180 |
| BsoBI | CYCGRG | 1 cut(s) | 2096 |
| Bsp1286I | GDGCHC | 5 cut(s) | 706, 1369, 1982, 2571, 3307 |
| Bsp1407I | TGTACA | 1 cut(s) | 3486 |
| Bsp19I | CCATGG | 1 cut(s) | 2981 |
| BspACI | CCGC | 3 cut(s) | 2032, 3024, 3030 |
| BspANI | GGCC | 3 cut(s) | 1064, 2866, 3360 |
| BspCNI | CTCAG | 8 cut(s) | 228, 1537, 1942, 2679, 2842, 2868, 2919, 3033 |
| BspDI | ATCGAT | 2 cut(s) | 252, 290 |
| BspFNI | CGCG | 1 cut(s) | 908 |
| BspHI | TCATGA | 2 cut(s) | 399, 3244 |
| BspLI | GGNNCC | 5 cut(s) | 377, 456, 774, 1644, 1981 |
| BspMI | ACCTGC | 1 cut(s) | 1700 |
| BspQI | GCTCTTC | 2 cut(s) | 1194, 3312 |
| BspT107I | GGYRCC | 1 cut(s) | 375 |
| BspTI | CTTAAG | 4 cut(s) | 976, 1813, 2384, 2456 |
| BspTNI | GGTCTC | 1 cut(s) | 3180 |
| BsrDI | GCAATG | 1 cut(s) | 1518 |
| BsrGI | TGTACA | 1 cut(s) | 3486 |
| BsrI | ACTGG | 2 cut(s) | 3042, 3231 |
| BssECI | CCNNGG | 7 cut(s) | 19, 187, 779, 1059, 1355, 1646, 2981 |
| BssSI | CACGAG | 1 cut(s) | 1958 |
| BssT1I | CCWWGG | 4 cut(s) | 19, 1059, 1355, 2981 |
| Bst2BI | CACGAG | 1 cut(s) | 1958 |
| Bst2UI | CCWGG | 3 cut(s) | 780, 1647, 2528 |
| Bst6I | CTCTTC | 3 cut(s) | 1194, 1998, 3312 |
| BstAFI | CTTAAG | 4 cut(s) | 976, 1813, 2384, 2456 |
| BstAUI | TGTACA | 1 cut(s) | 3486 |
| BstBAI | YACGTR | 1 cut(s) | 3438 |
| BstC8I | GCNNGC | 3 cut(s) | 1251, 1369, 3334 |
| BstDSI | CCRYGG | 2 cut(s) | 187, 2981 |
| BstFNI | CGCG | 1 cut(s) | 908 |
| BstHHI | GCGC | 3 cut(s) | 204, 908, 1603 |
| BstMAI | GTCTC | 6 cut(s) | 477, 2204, 2816, 3100, 3149, 3180 |
| BstMCI | CGRYCG | 1 cut(s) | 294 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 575 |
| BstNI | CCWGG | 3 cut(s) | 780, 1647, 2528 |
| BstNSI | RCATGY | 5 cut(s) | 1207, 1458, 1929, 1975, 2924 |
| BstSCI | CCNGG | 3 cut(s) | 778, 1645, 2526 |
| BstSFI | CTRYAG | 1 cut(s) | 901 |
| BstSNI | TACGTA | 1 cut(s) | 3438 |
| BstUI | CGCG | 1 cut(s) | 908 |
| BstV1I | GCAGC | 2 cut(s) | 19, 598 |
| BstV2I | GAAGAC | 3 cut(s) | 166, 490, 1434 |
| BstX2I | RGATCY | 3 cut(s) | 323, 454, 1165 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2527 |
| BstYI | RGATCY | 3 cut(s) | 323, 454, 1165 |
| Bsu15I | ATCGAT | 2 cut(s) | 252, 290 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2855 |
| BsuI | GTATCC | 1 cut(s) | 595 |
| BsuRI | GGCC | 3 cut(s) | 1064, 2866, 3360 |
| BsuTUI | ATCGAT | 2 cut(s) | 252, 290 |
| BtgI | CCRYGG | 2 cut(s) | 187, 2981 |
| BtrI | CACGTC | 2 cut(s) | 1033, 1537 |
| BtsIMutI | CAGTG | 6 cut(s) | 435, 1864, 2902, 2914, 2946, 3562 |
| BveI | ACCTGC | 1 cut(s) | 1700 |
| Cac8I | GCNNGC | 3 cut(s) | 1251, 1369, 3334 |
| CciI | TCATGA | 2 cut(s) | 399, 3244 |
| CfoI | GCGC | 3 cut(s) | 204, 908, 1603 |
| Cfr13I | GGNCC | 4 cut(s) | 296, 773, 1085, 2323 |
| ClaI | ATCGAT | 2 cut(s) | 252, 290 |
| Csp6I | GTAC | 6 cut(s) | 57, 1046, 1691, 3250, 3487, 3587 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1851, 1886, 2112, 2147 |
| CviQI | GTAC | 6 cut(s) | 57, 1046, 1691, 3250, 3487, 3587 |
| DraI | TTTAAA | 1 cut(s) | 238 |
| EaeI | YGGCCR | 2 cut(s) | 1062, 3358 |
| Eam1104I | CTCTTC | 3 cut(s) | 1194, 1998, 3312 |
| EarI | CTCTTC | 3 cut(s) | 1194, 1998, 3312 |
| Ecl136II | GAGCTC | 2 cut(s) | 704, 2569 |
| Eco105I | TACGTA | 1 cut(s) | 3438 |
| Eco130I | CCWWGG | 4 cut(s) | 19, 1059, 1355, 2981 |
| Eco24I | GRGCYC | 5 cut(s) | 706, 1369, 1982, 2571, 3307 |
| Eco31I | GGTCTC | 1 cut(s) | 3180 |
| Eco32I | GATATC | 2 cut(s) | 640, 2621 |
| Eco47I | GGWCC | 4 cut(s) | 296, 773, 1085, 2323 |
| Eco53kI | GAGCTC | 2 cut(s) | 704, 2569 |
| Eco57I | CTGAAG | 6 cut(s) | 876, 1707, 2225, 2366, 2438, 3617 |
| Eco81I | CCTNAGG | 1 cut(s) | 2855 |
| Eco88I | CYCGRG | 1 cut(s) | 2096 |
| EcoICRI | GAGCTC | 2 cut(s) | 704, 2569 |
| EcoO109I | RGGNCCY | 1 cut(s) | 773 |
| EcoRI | GAATTC | 1 cut(s) | 2912 |
| EcoRII | CCWGG | 3 cut(s) | 778, 1645, 2526 |
| EcoRV | GATATC | 2 cut(s) | 640, 2621 |
| EcoT14I | CCWWGG | 4 cut(s) | 19, 1059, 1355, 2981 |
| EcoT22I | ATGCAT | 2 cut(s) | 876, 1590 |
| EcoT38I | GRGCYC | 5 cut(s) | 706, 1369, 1982, 2571, 3307 |
| ErhI | CCWWGG | 4 cut(s) | 19, 1059, 1355, 2981 |
| Esp3I | CGTCTC | 1 cut(s) | 2816 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 902, 934, 1482, 1514 |
| FaqI | GGGAC | 4 cut(s) | 37, 2836, 2839, 3393 |
| FauNDI | CATATG | 3 cut(s) | 708, 1231, 3483 |
| FblI | GTMKAC | 1 cut(s) | 3004 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 612 |
| FriOI | GRGCYC | 5 cut(s) | 706, 1369, 1982, 2571, 3307 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 612 |
| FspI | TGCGCA | 1 cut(s) | 203 |
| GlaI | GCGC | 3 cut(s) | 203, 907, 1602 |
| GluI | GCNGC | 2 cut(s) | 33, 612 |
| GsaI | CCCAGC | 1 cut(s) | 183 |
| GsuI | CTGGAG | 3 cut(s) | 600, 762, 2549 |
| HaeIII | GGCC | 3 cut(s) | 1064, 2866, 3360 |
| HapII | CCGG | 2 cut(s) | 480, 2786 |
| HhaI | GCGC | 3 cut(s) | 204, 908, 1603 |
| Hin6I | GCGC | 3 cut(s) | 202, 906, 1601 |
| HinP1I | GCGC | 3 cut(s) | 202, 906, 1601 |
| HincII | GTYRAC | 1 cut(s) | 3508 |
| HindII | GTYRAC | 1 cut(s) | 3508 |
| HindIII | AAGCTT | 4 cut(s) | 1247, 1782, 1985, 2495 |
| HpaII | CCGG | 2 cut(s) | 480, 2786 |
| HphI | GGTGA | 3 cut(s) | 114, 2800, 3529 |
| Hpy166II | GTNNAC | 5 cut(s) | 1628, 1859, 3005, 3489, 3508 |
| Hpy8I | GTNNAC | 5 cut(s) | 1628, 1859, 3005, 3489, 3508 |
| Hpy99I | CGWCG | 3 cut(s) | 373, 1703, 3012 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 575 |
| HspAI | GCGC | 3 cut(s) | 202, 906, 1601 |
| LguI | GCTCTTC | 2 cut(s) | 1194, 3312 |
| Lsp1109I | GCAGC | 2 cut(s) | 19, 598 |
| MaeIII | GTNAC | 6 cut(s) | 155, 218, 1261, 1277, 2640, 3517 |
| MflI | RGATCY | 3 cut(s) | 323, 454, 1165 |
| MhlI | GDGCHC | 5 cut(s) | 706, 1369, 1982, 2571, 3307 |
| MlsI | TGGCCA | 1 cut(s) | 1064 |
| MluNI | TGGCCA | 1 cut(s) | 1064 |
| MlyI | GAGTC | 4 cut(s) | 99, 734, 1827, 2821 |
| MmeI | TCCRAC | 6 cut(s) | 399, 482, 699, 1076, 2301, 2741 |
| Mox20I | TGGCCA | 1 cut(s) | 1064 |
| Mph1103I | ATGCAT | 2 cut(s) | 876, 1590 |
| MroXI | GAANNNNTTC | 7 cut(s) | 497, 1494, 1508, 1620, 2007, 2841, 3422 |
| MscI | TGGCCA | 1 cut(s) | 1064 |
| MslI | CAYNNNNRTG | 1 cut(s) | 851 |
| Msp20I | TGGCCA | 1 cut(s) | 1064 |
| MspA1I | CMGCKG | 1 cut(s) | 3024 |
| MspCI | CTTAAG | 4 cut(s) | 976, 1813, 2384, 2456 |
| MspI | CCGG | 2 cut(s) | 480, 2786 |
| MspR9I | CCNGG | 3 cut(s) | 780, 1647, 2528 |
| Mva1269I | GAATGC | 4 cut(s) | 586, 2161, 2305, 2521 |
| MvaI | CCWGG | 3 cut(s) | 780, 1647, 2528 |
| MvnI | CGCG | 1 cut(s) | 908 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 575 |
| NcoI | CCATGG | 1 cut(s) | 2981 |
| NdeI | CATATG | 3 cut(s) | 708, 1231, 3483 |
| NlaIV | GGNNCC | 5 cut(s) | 377, 456, 774, 1644, 1981 |
| NmuCI | GTSAC | 2 cut(s) | 218, 3517 |
| NsbI | TGCGCA | 1 cut(s) | 203 |
| NsiI | ATGCAT | 2 cut(s) | 876, 1590 |
| NspI | RCATGY | 5 cut(s) | 1207, 1458, 1929, 1975, 2924 |
| PaeR7I | CTCGAG | 1 cut(s) | 2096 |
| PagI | TCATGA | 2 cut(s) | 399, 3244 |
| PaqCI | CACCTGC | 1 cut(s) | 1700 |
| PciI | ACATGT | 2 cut(s) | 1971, 2920 |
| PciSI | GCTCTTC | 2 cut(s) | 1194, 3312 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1891, 2550, 3007 |
| PctI | GAATGC | 4 cut(s) | 586, 2161, 2305, 2521 |
| PdmI | GAANNNNTTC | 7 cut(s) | 497, 1494, 1508, 1620, 2007, 2841, 3422 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 785, 1235 |
| PkrI | GCNGC | 2 cut(s) | 34, 613 |
| Ple19I | CGATCG | 1 cut(s) | 294 |
| PleI | GAGTC | 4 cut(s) | 98, 734, 1826, 2821 |
| PpsI | GAGTC | 4 cut(s) | 98, 734, 1826, 2821 |
| Ppu21I | YACGTR | 1 cut(s) | 3438 |
| PpuMI | RGGWCCY | 1 cut(s) | 773 |
| PscI | ACATGT | 2 cut(s) | 1971, 2920 |
| PshBI | ATTAAT | 1 cut(s) | 2235 |
| Psp124BI | GAGCTC | 2 cut(s) | 706, 2571 |
| Psp1406I | AACGTT | 1 cut(s) | 994 |
| Psp5II | RGGWCCY | 1 cut(s) | 773 |
| Psp6I | CCWGG | 3 cut(s) | 778, 1645, 2526 |
| PspFI | CCCAGC | 1 cut(s) | 179 |
| PspGI | CCWGG | 3 cut(s) | 778, 1645, 2526 |
| PspN4I | GGNNCC | 5 cut(s) | 377, 456, 774, 1644, 1981 |
| PspPI | GGNCC | 4 cut(s) | 296, 773, 1085, 2323 |
| PspPPI | RGGWCCY | 1 cut(s) | 773 |
| PspXI | VCTCGAGB | 1 cut(s) | 2096 |
| PsuI | RGATCY | 3 cut(s) | 323, 454, 1165 |
| PvuI | CGATCG | 1 cut(s) | 294 |
| RsaI | GTAC | 6 cut(s) | 58, 1047, 1692, 3251, 3488, 3588 |
| RsaNI | GTAC | 6 cut(s) | 57, 1046, 1691, 3250, 3487, 3587 |
| RseI | CAYNNNNRTG | 1 cut(s) | 851 |
| SacI | GAGCTC | 2 cut(s) | 706, 2571 |
| SapI | GCTCTTC | 2 cut(s) | 1194, 3312 |
| SatI | GCNGC | 2 cut(s) | 33, 612 |
| Sau96I | GGNCC | 4 cut(s) | 296, 773, 1085, 2323 |
| ScaI | AGTACT | 1 cut(s) | 1692 |
| SchI | GAGTC | 4 cut(s) | 99, 734, 1827, 2821 |
| ScrFI | CCNGG | 3 cut(s) | 780, 1647, 2528 |
| SduI | GDGCHC | 5 cut(s) | 706, 1369, 1982, 2571, 3307 |
| SfcI | CTRYAG | 1 cut(s) | 901 |
| Sfr274I | CTCGAG | 1 cut(s) | 2096 |
| SinI | GGWCC | 4 cut(s) | 296, 773, 1085, 2323 |
| SlaI | CTCGAG | 1 cut(s) | 2096 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 851 |
| SnaBI | TACGTA | 1 cut(s) | 3438 |
| SsiI | CCGC | 3 cut(s) | 2032, 3024, 3030 |
| SspI | AATATT | 4 cut(s) | 63, 274, 1153, 3136 |
| SstI | GAGCTC | 2 cut(s) | 706, 2571 |
| StyD4I | CCNGG | 3 cut(s) | 778, 1645, 2526 |
| StyI | CCWWGG | 4 cut(s) | 19, 1059, 1355, 2981 |
| TaqII | GACCGA | 1 cut(s) | 284 |
| TatI | WGTACW | 4 cut(s) | 1045, 1690, 3249, 3486 |
| TscAI | CASTG | 6 cut(s) | 435, 1871, 2902, 2914, 2946, 3562 |
| TseFI | GTSAC | 2 cut(s) | 218, 3517 |
| TseI | GCWGC | 2 cut(s) | 32, 611 |
| Tsp45I | GTSAC | 2 cut(s) | 218, 3517 |
| TspGWI | ACGGA | 1 cut(s) | 2130 |
| TspRI | CASTG | 6 cut(s) | 435, 1871, 2902, 2914, 2946, 3562 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 785, 1235 |
| Vha464I | CTTAAG | 4 cut(s) | 976, 1813, 2384, 2456 |
| VpaK11BI | GGWCC | 4 cut(s) | 296, 773, 1085, 2323 |
| VspI | ATTAAT | 1 cut(s) | 2235 |
| XapI | RAATTY | 7 cut(s) | 83, 765, 1174, 1825, 2735, 2912, 3467 |
| XceI | RCATGY | 5 cut(s) | 1207, 1458, 1929, 1975, 2924 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2728 |
| XhoI | CTCGAG | 1 cut(s) | 2096 |
| XmiI | GTMKAC | 1 cut(s) | 3004 |
| XmnI | GAANNNNTTC | 7 cut(s) | 497, 1494, 1508, 1620, 2007, 2841, 3422 |
| ZrmI | AGTACT | 1 cut(s) | 1692 |
| Zsp2I | ATGCAT | 2 cut(s) | 876, 1590 |