Disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 93 - 270 | 9.7e-65 | TIR domain |
| TIR_2 | PF13676 | 96 - 190 | 2.1e-11 | TIR domain |
| NB-ARC | PF00931 | 283 - 445 | 7.8e-14 | NB-ARC domain |
| AAA_22 | PF13401 | 290 - 391 | 9.6e-06 | AAA domain |
| WHD_ROQ1 | PF23282 | 513 - 560 | 2.2e-06 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 696 - 821 | 2.4e-11 | Leucine-rich repeat region |
| LRR_3 | PF07725 | 717 - 736 | 2.6e-08 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 791 - 891 | 1.1e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 1067 - 1156 | 6.2e-11 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 2722, 3208 |
| AccIII | TCCGGA | 2 cut(s) | 124, 2143 |
| AciI | CCGC | 7 cut(s) | 890, 1429, 1834, 2409, 2894, 3546, 3602 |
| AclWI | GGATC | 5 cut(s) | 445, 1155, 1262, 3106, 3603 |
| AcoI | YGGCCR | 2 cut(s) | 504, 3359 |
| AcsI | RAATTY | 4 cut(s) | 190, 599, 1927, 2888 |
| AcvI | CACGTG | 1 cut(s) | 2393 |
| AdeI | CACNNNGTG | 1 cut(s) | 2838 |
| AfaI | GTAC | 3 cut(s) | 1013, 3369, 3415 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 899, 1346, 2926 |
| AflII | CTTAAG | 1 cut(s) | 2882 |
| AflIII | ACRYGT | 3 cut(s) | 623, 762, 2392 |
| AgeI | ACCGGT | 1 cut(s) | 593 |
| AjiI | CACGTC | 1 cut(s) | 2835 |
| AjnI | CCWGG | 3 cut(s) | 892, 1198, 2364 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1395, 1427 |
| Alw21I | GWGCWC | 8 cut(s) | 420, 820, 1021, 1887, 2475, 2790, 2989, 3587 |
| Alw44I | GTGCAC | 1 cut(s) | 1017 |
| AlwI | GGATC | 5 cut(s) | 445, 1155, 1262, 3106, 3603 |
| Ama87I | CYCGRG | 3 cut(s) | 292, 2762, 3077 |
| Aor13HI | TCCGGA | 2 cut(s) | 124, 2143 |
| AoxI | GGCC | 3 cut(s) | 504, 1636, 3359 |
| ApaLI | GTGCAC | 1 cut(s) | 1017 |
| ApeKI | GCWGC | 2 cut(s) | 173, 2175 |
| ApoI | RAATTY | 4 cut(s) | 190, 599, 1927, 2888 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 520, 552 |
| AsiGI | ACCGGT | 1 cut(s) | 593 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2688 |
| AspLEI | GCGC | 1 cut(s) | 849 |
| AspS9I | GGNCC | 4 cut(s) | 410, 887, 1196, 3633 |
| AsuC2I | CCSGG | 1 cut(s) | 2312 |
| AsuHPI | GGTGA | 7 cut(s) | 608, 1823, 1874, 2278, 2905, 3224, 3490 |
| AvaI | CYCGRG | 3 cut(s) | 292, 2762, 3077 |
| AvaII | GGWCC | 4 cut(s) | 410, 887, 1196, 3633 |
| BaeGI | GKGCMC | 1 cut(s) | 1021 |
| BanII | GRGCYC | 5 cut(s) | 420, 820, 2475, 2790, 3587 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 214, 246 |
| BauI | CACGAG | 2 cut(s) | 2537, 3615 |
| BbrPI | CACGTG | 1 cut(s) | 2393 |
| BbsI | GAAGAC | 1 cut(s) | 280 |
| Bbv12I | GWGCWC | 8 cut(s) | 420, 820, 1021, 1887, 2475, 2790, 2989, 3587 |
| BbvI | GCAGC | 2 cut(s) | 185, 2187 |
| BccI | CCATC | 9 cut(s) | 651, 790, 1182, 1291, 2224, 2350, 2442, 2557, 3386 |
| BceAI | ACGGC | 2 cut(s) | 161, 1594 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 69, 103, 1343, 1377 |
| BciT130I | CCWGG | 3 cut(s) | 894, 1200, 2366 |
| BciVI | GTATCC | 1 cut(s) | 3543 |
| BclI | TGATCA | 1 cut(s) | 1056 |
| BcnI | CCSGG | 1 cut(s) | 2312 |
| BfrI | CTTAAG | 1 cut(s) | 2882 |
| BfuI | GTATCC | 1 cut(s) | 3543 |
| BglII | AGATCT | 5 cut(s) | 1228, 2062, 2305, 2766, 3160 |
| BisI | GCNGC | 2 cut(s) | 174, 2176 |
| BlsI | GCNGC | 2 cut(s) | 175, 2177 |
| Bme1390I | CCNGG | 4 cut(s) | 894, 1200, 2312, 2366 |
| Bme18I | GGWCC | 4 cut(s) | 410, 887, 1196, 3633 |
| BmeT110I | CYCGRG | 3 cut(s) | 292, 2762, 3077 |
| BmgBI | CACGTC | 1 cut(s) | 2835 |
| BmgT120I | GGNCC | 4 cut(s) | 410, 887, 1196, 3633 |
| BmiI | GGNNCC | 2 cut(s) | 570, 888 |
| BmrFI | CCNGG | 4 cut(s) | 894, 1200, 2312, 2366 |
| BmsI | GCATC | 6 cut(s) | 91, 974, 1156, 1513, 1764, 2660 |
| BpiI | GAAGAC | 1 cut(s) | 280 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2252, 2284, 2959, 2991 |
| BpmI | CTGGAG | 2 cut(s) | 733, 2348 |
| Bpu10I | CCTNAGC | 2 cut(s) | 414, 2789 |
| BpuEI | CTTGAG | 7 cut(s) | 40, 448, 1083, 2207, 2305, 2443, 3316 |
| BpuMI | CCSGG | 1 cut(s) | 2312 |
| BsaAI | YACGTR | 4 cut(s) | 1645, 2020, 2393, 2984 |
| BsaBI | GATNNNNATC | 3 cut(s) | 449, 1214, 1545 |
| BsaI | GGTCTC | 1 cut(s) | 2847 |
| BsaJI | CCNNGG | 7 cut(s) | 301, 893, 1170, 1466, 2365, 2957, 3486 |
| BsaWI | WCCGGW | 3 cut(s) | 124, 593, 2143 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 133, 163, 297, 327, 923, 953 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 899, 1346, 2926 |
| Bse118I | RCCGGY | 1 cut(s) | 593 |
| Bse1I | ACTGG | 4 cut(s) | 278, 2289, 3090, 3431 |
| Bse3DI | GCAATG | 2 cut(s) | 18, 3372 |
| Bse8I | GATNNNNATC | 3 cut(s) | 449, 1214, 1545 |
| BseAI | TCCGGA | 2 cut(s) | 124, 2143 |
| BseBI | CCWGG | 3 cut(s) | 894, 1200, 2366 |
| BseDI | CCNNGG | 7 cut(s) | 301, 893, 1170, 1466, 2365, 2957, 3486 |
| BseJI | GATNNNNATC | 3 cut(s) | 449, 1214, 1545 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 899, 1346, 2926 |
| BseMI | GCAATG | 2 cut(s) | 18, 3372 |
| BseMII | CTCAG | 5 cut(s) | 96, 405, 1667, 2028, 2803 |
| BseNI | ACTGG | 4 cut(s) | 278, 2289, 3090, 3431 |
| BseRI | GAGGAG | 3 cut(s) | 409, 2260, 3488 |
| BseSI | GKGCMC | 1 cut(s) | 1021 |
| BseXI | GCAGC | 2 cut(s) | 185, 2187 |
| BsgI | GTGCAG | 1 cut(s) | 2066 |
| Bsh1285I | CGRYCG | 1 cut(s) | 408 |
| BshFI | GGCC | 3 cut(s) | 506, 1638, 3361 |
| BshTI | ACCGGT | 1 cut(s) | 593 |
| BsiEI | CGRYCG | 1 cut(s) | 408 |
| BsiHKAI | GWGCWC | 8 cut(s) | 420, 820, 1021, 1887, 2475, 2790, 2989, 3587 |
| BsiHKCI | CYCGRG | 3 cut(s) | 292, 2762, 3077 |
| BsiSI | CCGG | 7 cut(s) | 125, 594, 693, 2144, 2311, 3580, 3593 |
| BslFI | GGGAC | 3 cut(s) | 900, 1033, 3058 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 899, 1346, 2926 |
| BsmBI | CGTCTC | 2 cut(s) | 3122, 3285 |
| BsmFI | GGGAC | 3 cut(s) | 900, 1033, 3058 |
| BsmI | GAATGC | 2 cut(s) | 1324, 3548 |
| BsnI | GGCC | 3 cut(s) | 506, 1638, 3361 |
| Bso31I | GGTCTC | 1 cut(s) | 2847 |
| BsoBI | CYCGRG | 3 cut(s) | 292, 2762, 3077 |
| Bsp1286I | GDGCHC | 8 cut(s) | 420, 820, 1021, 1887, 2475, 2790, 2989, 3587 |
| Bsp13I | TCCGGA | 2 cut(s) | 124, 2143 |
| Bsp1407I | TGTACA | 1 cut(s) | 3413 |
| Bsp19I | CCATGG | 1 cut(s) | 2957 |
| BspACI | CCGC | 7 cut(s) | 890, 1429, 1834, 2409, 2894, 3546, 3602 |
| BspANI | GGCC | 3 cut(s) | 506, 1638, 3361 |
| BspCNI | CTCAG | 5 cut(s) | 97, 406, 1666, 2029, 2802 |
| BspEI | TCCGGA | 2 cut(s) | 124, 2143 |
| BspHI | TCATGA | 3 cut(s) | 513, 546, 1074 |
| BspLI | GGNNCC | 2 cut(s) | 570, 888 |
| BspPI | GGATC | 5 cut(s) | 445, 1155, 1262, 3106, 3603 |
| BspQI | GCTCTTC | 1 cut(s) | 3592 |
| BspTI | CTTAAG | 1 cut(s) | 2882 |
| BspTNI | GGTCTC | 1 cut(s) | 2847 |
| BsrDI | GCAATG | 2 cut(s) | 18, 3372 |
| BsrFI | RCCGGY | 1 cut(s) | 593 |
| BsrGI | TGTACA | 1 cut(s) | 3413 |
| BsrI | ACTGG | 4 cut(s) | 278, 2289, 3090, 3431 |
| BssAI | RCCGGY | 1 cut(s) | 593 |
| BssECI | CCNNGG | 7 cut(s) | 301, 893, 1170, 1466, 2365, 2957, 3486 |
| BssNAI | GTATAC | 2 cut(s) | 2723, 3209 |
| BssSI | CACGAG | 2 cut(s) | 2537, 3615 |
| BssT1I | CCWWGG | 3 cut(s) | 1170, 1466, 2957 |
| Bst1107I | GTATAC | 2 cut(s) | 2723, 3209 |
| Bst2BI | CACGAG | 2 cut(s) | 2537, 3615 |
| Bst2UI | CCWGG | 3 cut(s) | 894, 1200, 2366 |
| Bst4CI | ACNGT | 5 cut(s) | 169, 1016, 1107, 1512, 3640 |
| Bst6I | CTCTTC | 6 cut(s) | 246, 1742, 1795, 2694, 3288, 3592 |
| BstAFI | CTTAAG | 1 cut(s) | 2882 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1783 |
| BstAUI | TGTACA | 1 cut(s) | 3413 |
| BstBAI | YACGTR | 4 cut(s) | 1645, 2020, 2393, 2984 |
| BstC8I | GCNNGC | 8 cut(s) | 524, 1567, 2180, 2744, 2898, 3219, 3223, 3421 |
| BstDSI | CCRYGG | 3 cut(s) | 301, 2957, 3486 |
| BstHHI | GCGC | 1 cut(s) | 849 |
| BstMCI | CGRYCG | 1 cut(s) | 408 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 179, 689, 1738, 1783, 2188 |
| BstNI | CCWGG | 3 cut(s) | 894, 1200, 2366 |
| BstNSI | RCATGY | 5 cut(s) | 90, 627, 766, 1736, 2900 |
| BstSCI | CCNGG | 4 cut(s) | 892, 1198, 2310, 2364 |
| BstSLI | GKGCMC | 1 cut(s) | 1021 |
| BstSNI | TACGTA | 1 cut(s) | 2020 |
| BstV1I | GCAGC | 2 cut(s) | 185, 2187 |
| BstV2I | GAAGAC | 1 cut(s) | 280 |
| BstX2I | RGATCY | 7 cut(s) | 1228, 2062, 2305, 2766, 3111, 3160, 3595 |
| BstYI | RGATCY | 7 cut(s) | 1228, 2062, 2305, 2766, 3111, 3160, 3595 |
| BstZ17I | GTATAC | 2 cut(s) | 2723, 3209 |
| BsuI | GTATCC | 1 cut(s) | 3543 |
| BsuRI | GGCC | 3 cut(s) | 506, 1638, 3361 |
| BtgI | CCRYGG | 3 cut(s) | 301, 2957, 3486 |
| BtgZI | GCGATG | 1 cut(s) | 3209 |
| BtrI | CACGTC | 1 cut(s) | 2835 |
| BtsIMutI | CAGTG | 4 cut(s) | 165, 747, 1021, 3636 |
| Cac8I | GCNNGC | 8 cut(s) | 524, 1567, 2180, 2744, 2898, 3219, 3223, 3421 |
| CciI | TCATGA | 3 cut(s) | 513, 546, 1074 |
| CfoI | GCGC | 1 cut(s) | 849 |
| Cfr10I | RCCGGY | 1 cut(s) | 593 |
| Cfr13I | GGNCC | 4 cut(s) | 410, 887, 1196, 3633 |
| Csp6I | GTAC | 3 cut(s) | 1012, 3368, 3414 |
| CspAI | ACCGGT | 1 cut(s) | 593 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2592, 2627, 3475, 3510 |
| CviQI | GTAC | 3 cut(s) | 1012, 3368, 3414 |
| DraI | TTTAAA | 1 cut(s) | 1719 |
| DraIII | CACNNNGTG | 1 cut(s) | 2838 |
| EaeI | YGGCCR | 2 cut(s) | 504, 3359 |
| Eam1104I | CTCTTC | 6 cut(s) | 246, 1742, 1795, 2694, 3288, 3592 |
| EarI | CTCTTC | 6 cut(s) | 246, 1742, 1795, 2694, 3288, 3592 |
| EciI | GGCGGA | 1 cut(s) | 3591 |
| Ecl136II | GAGCTC | 5 cut(s) | 418, 818, 2473, 2788, 3585 |
| Eco105I | TACGTA | 1 cut(s) | 2020 |
| Eco130I | CCWWGG | 3 cut(s) | 1170, 1466, 2957 |
| Eco147I | AGGCCT | 1 cut(s) | 1638 |
| Eco24I | GRGCYC | 5 cut(s) | 420, 820, 2475, 2790, 3587 |
| Eco31I | GGTCTC | 1 cut(s) | 2847 |
| Eco32I | GATATC | 4 cut(s) | 698, 1072, 2518, 2712 |
| Eco47I | GGWCC | 4 cut(s) | 410, 887, 1196, 3633 |
| Eco53kI | GAGCTC | 5 cut(s) | 418, 818, 2473, 2788, 3585 |
| Eco72I | CACGTG | 1 cut(s) | 2393 |
| Eco88I | CYCGRG | 3 cut(s) | 292, 2762, 3077 |
| EcoICRI | GAGCTC | 5 cut(s) | 418, 818, 2473, 2788, 3585 |
| EcoRI | GAATTC | 1 cut(s) | 2888 |
| EcoRII | CCWGG | 3 cut(s) | 892, 1198, 2364 |
| EcoRV | GATATC | 4 cut(s) | 698, 1072, 2518, 2712 |
| EcoT14I | CCWWGG | 3 cut(s) | 1170, 1466, 2957 |
| EcoT22I | ATGCAT | 1 cut(s) | 1779 |
| EcoT38I | GRGCYC | 5 cut(s) | 420, 820, 2475, 2790, 3587 |
| ErhI | CCWWGG | 3 cut(s) | 1170, 1466, 2957 |
| Esp3I | CGTCTC | 2 cut(s) | 3122, 3285 |
| FaqI | GGGAC | 3 cut(s) | 900, 1033, 3058 |
| FauI | CCCGC | 4 cut(s) | 1422, 2416, 2901, 3539 |
| FauNDI | CATATG | 1 cut(s) | 822 |
| FbaI | TGATCA | 1 cut(s) | 1056 |
| FblI | GTMKAC | 2 cut(s) | 2722, 3208 |
| Fnu4HI | GCNGC | 2 cut(s) | 174, 2176 |
| FriOI | GRGCYC | 5 cut(s) | 420, 820, 2475, 2790, 3587 |
| Fsp4HI | GCNGC | 2 cut(s) | 174, 2176 |
| GlaI | GCGC | 1 cut(s) | 848 |
| GluI | GCNGC | 2 cut(s) | 174, 2176 |
| GsuI | CTGGAG | 2 cut(s) | 733, 2348 |
| HaeIII | GGCC | 3 cut(s) | 506, 1638, 3361 |
| HapII | CCGG | 7 cut(s) | 125, 594, 693, 2144, 2311, 3580, 3593 |
| HhaI | GCGC | 1 cut(s) | 849 |
| Hin6I | GCGC | 1 cut(s) | 847 |
| HinP1I | GCGC | 1 cut(s) | 847 |
| HindIII | AAGCTT | 2 cut(s) | 666, 2180 |
| HpaII | CCGG | 7 cut(s) | 125, 594, 693, 2144, 2311, 3580, 3593 |
| HphI | GGTGA | 7 cut(s) | 608, 1823, 1874, 2278, 2905, 3224, 3490 |
| Hpy99I | CGWCG | 5 cut(s) | 800, 1490, 1892, 2159, 2839 |
| HpyCH4III | ACNGT | 5 cut(s) | 169, 1016, 1107, 1512, 3640 |
| HpyCH4IV | ACGT | 6 cut(s) | 1644, 1912, 2019, 2392, 2834, 2983 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 179, 689, 1738, 1783, 2188 |
| HpySE526I | ACGT | 6 cut(s) | 1644, 1912, 2019, 2392, 2834, 2983 |
| HspAI | GCGC | 1 cut(s) | 847 |
| Kpn2I | TCCGGA | 2 cut(s) | 124, 2143 |
| Ksp22I | TGATCA | 1 cut(s) | 1056 |
| LguI | GCTCTTC | 1 cut(s) | 3592 |
| LmnI | GCTCC | 9 cut(s) | 305, 568, 2340, 2409, 2451, 2478, 2614, 3490, 3582 |
| Lsp1109I | GCAGC | 2 cut(s) | 185, 2187 |
| LweI | GCATC | 6 cut(s) | 91, 974, 1156, 1513, 1764, 2660 |
| MaeII | ACGT | 6 cut(s) | 1644, 1912, 2019, 2392, 2834, 2983 |
| MaeIII | GTNAC | 6 cut(s) | 332, 1517, 1532, 2422, 3198, 3478 |
| MfeI | CAATTG | 4 cut(s) | 839, 1022, 2438, 3526 |
| MflI | RGATCY | 7 cut(s) | 1228, 2062, 2305, 2766, 3111, 3160, 3595 |
| MhlI | GDGCHC | 8 cut(s) | 420, 820, 1021, 1887, 2475, 2790, 2989, 3587 |
| MlyI | GAGTC | 5 cut(s) | 55, 140, 168, 2988, 3284 |
| MmeI | TCCRAC | 5 cut(s) | 226, 966, 976, 1187, 2717 |
| Mph1103I | ATGCAT | 1 cut(s) | 1779 |
| MroI | TCCGGA | 2 cut(s) | 124, 2143 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2688 |
| MslI | CAYNNNNRTG | 2 cut(s) | 167, 2098 |
| MspA1I | CMGCKG | 1 cut(s) | 711 |
| MspCI | CTTAAG | 1 cut(s) | 2882 |
| MspI | CCGG | 7 cut(s) | 125, 594, 693, 2144, 2311, 3580, 3593 |
| MspR9I | CCNGG | 4 cut(s) | 894, 1200, 2312, 2366 |
| MunI | CAATTG | 4 cut(s) | 839, 1022, 2438, 3526 |
| Mva1269I | GAATGC | 2 cut(s) | 1324, 3548 |
| MvaI | CCWGG | 3 cut(s) | 894, 1200, 2366 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 179, 689, 1738, 1783, 2188 |
| NciI | CCSGG | 1 cut(s) | 2312 |
| NcoI | CCATGG | 1 cut(s) | 2957 |
| NdeI | CATATG | 1 cut(s) | 822 |
| NlaIV | GGNNCC | 2 cut(s) | 570, 888 |
| NmeAIII | GCCGAG | 2 cut(s) | 532, 3387 |
| NmuCI | GTSAC | 4 cut(s) | 332, 1532, 2422, 3478 |
| NsiI | ATGCAT | 1 cut(s) | 1779 |
| NspI | RCATGY | 5 cut(s) | 90, 627, 766, 1736, 2900 |
| PaeI | GCATGC | 1 cut(s) | 2900 |
| PaeR7I | CTCGAG | 1 cut(s) | 3077 |
| PagI | TCATGA | 3 cut(s) | 513, 546, 1074 |
| PceI | AGGCCT | 1 cut(s) | 1638 |
| PciI | ACATGT | 2 cut(s) | 623, 762 |
| PciSI | GCTCTTC | 1 cut(s) | 3592 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1350, 2834 |
| PctI | GAATGC | 2 cut(s) | 1324, 3548 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2688 |
| PfoI | TCCNGGA | 2 cut(s) | 1198, 2310 |
| PinAI | ACCGGT | 1 cut(s) | 593 |
| PkrI | GCNGC | 2 cut(s) | 175, 2177 |
| Ple19I | CGATCG | 1 cut(s) | 408 |
| PleI | GAGTC | 5 cut(s) | 54, 139, 167, 2988, 3283 |
| PmaCI | CACGTG | 1 cut(s) | 2393 |
| PmlI | CACGTG | 1 cut(s) | 2393 |
| PpsI | GAGTC | 5 cut(s) | 54, 139, 167, 2988, 3283 |
| Ppu21I | YACGTR | 4 cut(s) | 1645, 2020, 2393, 2984 |
| PscI | ACATGT | 2 cut(s) | 623, 762 |
| Psp124BI | GAGCTC | 5 cut(s) | 420, 820, 2475, 2790, 3587 |
| Psp6I | CCWGG | 3 cut(s) | 892, 1198, 2364 |
| PspCI | CACGTG | 1 cut(s) | 2393 |
| PspGI | CCWGG | 3 cut(s) | 892, 1198, 2364 |
| PspN4I | GGNNCC | 2 cut(s) | 570, 888 |
| PspPI | GGNCC | 4 cut(s) | 410, 887, 1196, 3633 |
| PsuI | RGATCY | 7 cut(s) | 1228, 2062, 2305, 2766, 3111, 3160, 3595 |
| PvuI | CGATCG | 1 cut(s) | 408 |
| PvuII | CAGCTG | 1 cut(s) | 711 |
| RsaI | GTAC | 3 cut(s) | 1013, 3369, 3415 |
| RsaNI | GTAC | 3 cut(s) | 1012, 3368, 3414 |
| RseI | CAYNNNNRTG | 2 cut(s) | 167, 2098 |
| SacI | GAGCTC | 5 cut(s) | 420, 820, 2475, 2790, 3587 |
| SapI | GCTCTTC | 1 cut(s) | 3592 |
| SatI | GCNGC | 2 cut(s) | 174, 2176 |
| Sau96I | GGNCC | 4 cut(s) | 410, 887, 1196, 3633 |
| SchI | GAGTC | 5 cut(s) | 55, 140, 168, 2988, 3284 |
| ScrFI | CCNGG | 4 cut(s) | 894, 1200, 2312, 2366 |
| SduI | GDGCHC | 8 cut(s) | 420, 820, 1021, 1887, 2475, 2790, 2989, 3587 |
| SfaNI | GCATC | 6 cut(s) | 91, 974, 1156, 1513, 1764, 2660 |
| Sfr274I | CTCGAG | 1 cut(s) | 3077 |
| SinI | GGWCC | 4 cut(s) | 410, 887, 1196, 3633 |
| SlaI | CTCGAG | 1 cut(s) | 3077 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 167, 2098 |
| SmlI | CTYRAG | 9 cut(s) | 19, 463, 1098, 2222, 2320, 2458, 2882, 3077, 3295 |
| SmoI | CTYRAG | 9 cut(s) | 19, 463, 1098, 2222, 2320, 2458, 2882, 3077, 3295 |
| SnaBI | TACGTA | 1 cut(s) | 2020 |
| SphI | GCATGC | 1 cut(s) | 2900 |
| SseBI | AGGCCT | 1 cut(s) | 1638 |
| SsiI | CCGC | 7 cut(s) | 890, 1429, 1834, 2409, 2894, 3546, 3602 |
| SspI | AATATT | 1 cut(s) | 2301 |
| SstI | GAGCTC | 5 cut(s) | 420, 820, 2475, 2790, 3587 |
| StuI | AGGCCT | 1 cut(s) | 1638 |
| StyD4I | CCNGG | 4 cut(s) | 892, 1198, 2310, 2364 |
| StyI | CCWWGG | 3 cut(s) | 1170, 1466, 2957 |
| TaaI | ACNGT | 5 cut(s) | 169, 1016, 1107, 1512, 3640 |
| TaiI | ACGT | 6 cut(s) | 1647, 1915, 2022, 2395, 2837, 2986 |
| TaqII | GACCGA | 1 cut(s) | 398 |
| TatI | WGTACW | 3 cut(s) | 1011, 3367, 3413 |
| TscAI | CASTG | 4 cut(s) | 172, 754, 1021, 3643 |
| TseFI | GTSAC | 4 cut(s) | 332, 1532, 2422, 3478 |
| TseI | GCWGC | 2 cut(s) | 173, 2175 |
| Tsp45I | GTSAC | 4 cut(s) | 332, 1532, 2422, 3478 |
| TspGWI | ACGGA | 6 cut(s) | 318, 1503, 1786, 2708, 3104, 3503 |
| TspRI | CASTG | 4 cut(s) | 172, 754, 1021, 3643 |
| Vha464I | CTTAAG | 1 cut(s) | 2882 |
| VneI | GTGCAC | 1 cut(s) | 1017 |
| VpaK11BI | GGWCC | 4 cut(s) | 410, 887, 1196, 3633 |
| XapI | RAATTY | 4 cut(s) | 190, 599, 1927, 2888 |
| XbaI | TCTAGA | 1 cut(s) | 2246 |
| XceI | RCATGY | 5 cut(s) | 90, 627, 766, 1736, 2900 |
| XhoI | CTCGAG | 1 cut(s) | 3077 |
| XmiI | GTMKAC | 2 cut(s) | 2722, 3208 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2688 |
| Zsp2I | ATGCAT | 1 cut(s) | 1779 |