Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 2 - 156 | 3.1e-49 | TIR domain |
| TIR_2 | PF13676 | 3 - 76 | 1.7e-08 | TIR domain |
| NB-ARC | PF00931 | 160 - 332 | 1.9e-13 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 399 - 470 | 1.1e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 572 - 591 | 4e-06 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 690 - 792 | 1.5e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 993 - 1104 | 4.3e-09 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2239 |
| Acc36I | ACCTGC | 2 cut(s) | 1475, 2301 |
| AccB1I | GGYRCC | 1 cut(s) | 2992 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2221 |
| AccBSI | CCGCTC | 1 cut(s) | 2712 |
| AccI | GTMKAC | 2 cut(s) | 585, 3164 |
| AccII | CGCG | 1 cut(s) | 1626 |
| AciI | CCGC | 8 cut(s) | 82, 383, 1624, 1626, 1775, 2586, 2712, 3303 |
| AclI | AACGTT | 1 cut(s) | 2559 |
| AclWI | GGATC | 5 cut(s) | 221, 234, 2088, 2232, 2475 |
| AcoI | YGGCCR | 3 cut(s) | 207, 339, 384 |
| AcsI | RAATTY | 4 cut(s) | 994, 1207, 1535, 2669 |
| AcuI | CTGAAG | 6 cut(s) | 972, 1562, 1637, 2405, 2747, 2862 |
| AcvI | CACGTG | 1 cut(s) | 446 |
| AfaI | GTAC | 4 cut(s) | 819, 2363, 2786, 3212 |
| AflII | CTTAAG | 1 cut(s) | 1585 |
| AflIII | ACRYGT | 2 cut(s) | 1685, 3142 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1307 |
| AjnI | CCWGG | 4 cut(s) | 550, 859, 1420, 2980 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2280, 2312 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1380, 1412 |
| Alw21I | GWGCWC | 8 cut(s) | 478, 910, 2040, 2184, 2256, 2328, 2514, 2569 |
| Alw26I | GTCTC | 5 cut(s) | 313, 714, 2857, 2934, 3123 |
| AlwI | GGATC | 5 cut(s) | 221, 234, 2088, 2232, 2475 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 350 |
| Ama87I | CYCGRG | 2 cut(s) | 1928, 2095 |
| AoxI | GGCC | 5 cut(s) | 207, 339, 384, 2621, 3053 |
| ApeKI | GCWGC | 1 cut(s) | 1481 |
| ApoI | RAATTY | 4 cut(s) | 994, 1207, 1535, 2669 |
| AseI | ATTAAT | 6 cut(s) | 429, 1851, 2064, 2136, 2208, 2280 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1395 |
| AspLEI | GCGC | 2 cut(s) | 2240, 3119 |
| AspS9I | GGNCC | 4 cut(s) | 68, 545, 857, 2622 |
| AsuHPI | GGTGA | 5 cut(s) | 817, 1487, 3002, 3119, 3247 |
| AsuII | TTCGAA | 2 cut(s) | 416, 3219 |
| AsuNHI | GCTAGC | 1 cut(s) | 1372 |
| AvaI | CYCGRG | 2 cut(s) | 1928, 2095 |
| AvaII | GGWCC | 3 cut(s) | 68, 545, 857 |
| BaeGI | GKGCMC | 1 cut(s) | 3180 |
| BalI | TGGCCA | 2 cut(s) | 209, 341 |
| BamHI | GGATCC | 1 cut(s) | 226 |
| BanI | GGYRCC | 1 cut(s) | 2992 |
| BanII | GRGCYC | 7 cut(s) | 478, 1082, 2040, 2184, 2256, 2328, 2569 |
| BbrPI | CACGTG | 1 cut(s) | 446 |
| BbsI | GAAGAC | 3 cut(s) | 569, 2253, 2753 |
| Bbv12I | GWGCWC | 8 cut(s) | 478, 910, 2040, 2184, 2256, 2328, 2514, 2569 |
| BbvI | GCAGC | 1 cut(s) | 1493 |
| BciT130I | CCWGG | 4 cut(s) | 552, 861, 1422, 2982 |
| BclI | TGATCA | 4 cut(s) | 390, 1890, 2103, 2742 |
| BcoDI | GTCTC | 5 cut(s) | 313, 714, 2857, 2934, 3123 |
| BfmI | CTRYAG | 3 cut(s) | 673, 1353, 2409 |
| BfoI | RGCGCY | 1 cut(s) | 3120 |
| BfrI | CTTAAG | 1 cut(s) | 1585 |
| BfuAI | ACCTGC | 2 cut(s) | 1475, 2301 |
| BglII | AGATCT | 3 cut(s) | 1939, 2152, 2547 |
| BisI | GCNGC | 2 cut(s) | 384, 1482 |
| BlsI | GCNGC | 2 cut(s) | 385, 1483 |
| Bme1390I | CCNGG | 4 cut(s) | 552, 861, 1422, 2982 |
| Bme18I | GGWCC | 3 cut(s) | 68, 545, 857 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1307 |
| BmeT110I | CYCGRG | 2 cut(s) | 1928, 2095 |
| BmgT120I | GGNCC | 4 cut(s) | 68, 545, 857, 2622 |
| BmiI | GGNNCC | 8 cut(s) | 228, 546, 664, 1081, 2584, 2624, 2733, 2994 |
| BmrFI | CCNGG | 4 cut(s) | 552, 861, 1422, 2982 |
| BmrI | ACTGGG | 1 cut(s) | 379 |
| BmtI | GCTAGC | 1 cut(s) | 1376 |
| BmuI | ACTGGG | 1 cut(s) | 379 |
| BpiI | GAAGAC | 3 cut(s) | 569, 2253, 2753 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 1958, 1990, 2027, 2059, 2315, 2347, 2740, 2772 |
| BpmI | CTGGAG | 1 cut(s) | 1867 |
| Bpu10I | CCTNAGC | 1 cut(s) | 72 |
| Bpu14I | TTCGAA | 2 cut(s) | 416, 3219 |
| BpuEI | CTTGAG | 4 cut(s) | 1939, 2296, 2728, 2762 |
| BsaAI | YACGTR | 1 cut(s) | 446 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1938 |
| BsaI | GGTCTC | 1 cut(s) | 2934 |
| BsaJI | CCNNGG | 4 cut(s) | 551, 860, 1624, 2856 |
| BsaWI | WCCGGW | 1 cut(s) | 251 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 581, 611, 1380, 1410 |
| Bse118I | RCCGGY | 2 cut(s) | 287, 1046 |
| Bse1I | ACTGG | 8 cut(s) | 165, 374, 664, 811, 1432, 1884, 2226, 3290 |
| Bse3DI | GCAATG | 1 cut(s) | 1610 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1938 |
| BseBI | CCWGG | 4 cut(s) | 552, 861, 1422, 2982 |
| BseDI | CCNNGG | 4 cut(s) | 551, 860, 1624, 2856 |
| BseGI | GGATG | 7 cut(s) | 474, 1955, 1990, 2168, 2186, 2456, 2949 |
| BseJI | GATNNNNATC | 1 cut(s) | 1938 |
| BseMI | GCAATG | 1 cut(s) | 1610 |
| BseMII | CTCAG | 6 cut(s) | 63, 605, 1308, 1622, 1801, 2535 |
| BseNI | ACTGG | 8 cut(s) | 165, 374, 664, 811, 1432, 1884, 2226, 3290 |
| BseRI | GAGGAG | 2 cut(s) | 69, 2107 |
| BseSI | GKGCMC | 1 cut(s) | 3180 |
| BseXI | GCAGC | 1 cut(s) | 1493 |
| Bsh1236I | CGCG | 1 cut(s) | 1626 |
| BshFI | GGCC | 5 cut(s) | 209, 341, 386, 2623, 3055 |
| BshNI | GGYRCC | 1 cut(s) | 2992 |
| BsiHKAI | GWGCWC | 8 cut(s) | 478, 910, 2040, 2184, 2256, 2328, 2514, 2569 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1928, 2095 |
| BsiSI | CCGG | 3 cut(s) | 252, 288, 1047 |
| BsmAI | GTCTC | 5 cut(s) | 313, 714, 2857, 2934, 3123 |
| BsmI | GAATGC | 7 cut(s) | 1921, 2062, 2134, 2206, 2278, 2350, 3305 |
| BsnI | GGCC | 5 cut(s) | 209, 341, 386, 2623, 3055 |
| Bso31I | GGTCTC | 1 cut(s) | 2934 |
| BsoBI | CYCGRG | 2 cut(s) | 1928, 2095 |
| Bsp119I | TTCGAA | 2 cut(s) | 416, 3219 |
| Bsp1407I | TGTACA | 2 cut(s) | 2361, 3210 |
| BspACI | CCGC | 8 cut(s) | 82, 383, 1624, 1626, 1775, 2586, 2712, 3303 |
| BspANI | GGCC | 5 cut(s) | 209, 341, 386, 2623, 3055 |
| BspCNI | CTCAG | 6 cut(s) | 64, 606, 1309, 1623, 1800, 2536 |
| BspFNI | CGCG | 1 cut(s) | 1626 |
| BspHI | TCATGA | 1 cut(s) | 3121 |
| BspLI | GGNNCC | 8 cut(s) | 228, 546, 664, 1081, 2584, 2624, 2733, 2994 |
| BspMI | ACCTGC | 2 cut(s) | 1475, 2301 |
| BspOI | GCTAGC | 1 cut(s) | 1376 |
| BspPI | GGATC | 5 cut(s) | 221, 234, 2088, 2232, 2475 |
| BspQI | GCTCTTC | 2 cut(s) | 966, 1257 |
| BspT104I | TTCGAA | 2 cut(s) | 416, 3219 |
| BspT107I | GGYRCC | 1 cut(s) | 2992 |
| BspTI | CTTAAG | 1 cut(s) | 1585 |
| BspTNI | GGTCTC | 1 cut(s) | 2934 |
| BsrBI | CCGCTC | 1 cut(s) | 2712 |
| BsrDI | GCAATG | 1 cut(s) | 1610 |
| BsrFI | RCCGGY | 2 cut(s) | 287, 1046 |
| BsrGI | TGTACA | 2 cut(s) | 2361, 3210 |
| BsrI | ACTGG | 8 cut(s) | 165, 374, 664, 811, 1432, 1884, 2226, 3290 |
| BssAI | RCCGGY | 2 cut(s) | 287, 1046 |
| BssECI | CCNNGG | 4 cut(s) | 551, 860, 1624, 2856 |
| BssNAI | GTATAC | 1 cut(s) | 586 |
| BssT1I | CCWWGG | 1 cut(s) | 2856 |
| Bst1107I | GTATAC | 1 cut(s) | 586 |
| Bst2UI | CCWGG | 4 cut(s) | 552, 861, 1422, 2982 |
| Bst4CI | ACNGT | 8 cut(s) | 202, 346, 498, 605, 677, 1241, 1702, 3278 |
| BstAFI | CTTAAG | 1 cut(s) | 1585 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1369 |
| BstAUI | TGTACA | 2 cut(s) | 2361, 3210 |
| BstBAI | YACGTR | 1 cut(s) | 446 |
| BstBI | TTCGAA | 2 cut(s) | 416, 3219 |
| BstC8I | GCNNGC | 6 cut(s) | 84, 1374, 1745, 2997, 3085, 3248 |
| BstDSI | CCRYGG | 1 cut(s) | 1624 |
| BstEII | GGTNACC | 3 cut(s) | 353, 1049, 3278 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 747, 1087 |
| BstF5I | GGATG | 7 cut(s) | 474, 1955, 1990, 2168, 2186, 2456, 2949 |
| BstFNI | CGCG | 1 cut(s) | 1626 |
| BstH2I | RGCGCY | 1 cut(s) | 3120 |
| BstHHI | GCGC | 2 cut(s) | 2240, 3119 |
| BstMAI | GTCTC | 5 cut(s) | 313, 714, 2857, 2934, 3123 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 347, 842, 1369, 1632, 1744, 2251, 3309 |
| BstNI | CCWGG | 4 cut(s) | 552, 861, 1422, 2982 |
| BstNSI | RCATGY | 4 cut(s) | 979, 1230, 1689, 3146 |
| BstPI | GGTNACC | 3 cut(s) | 353, 1049, 3278 |
| BstSCI | CCNGG | 4 cut(s) | 550, 859, 1420, 2980 |
| BstSFI | CTRYAG | 3 cut(s) | 673, 1353, 2409 |
| BstSLI | GKGCMC | 1 cut(s) | 3180 |
| BstUI | CGCG | 1 cut(s) | 1626 |
| BstV1I | GCAGC | 1 cut(s) | 1493 |
| BstV2I | GAAGAC | 3 cut(s) | 569, 2253, 2753 |
| BstX2I | RGATCY | 7 cut(s) | 226, 1939, 2080, 2152, 2224, 2467, 2547 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1421 |
| BstYI | RGATCY | 7 cut(s) | 226, 1939, 2080, 2152, 2224, 2467, 2547 |
| BstZ17I | GTATAC | 1 cut(s) | 586 |
| BsuRI | GGCC | 5 cut(s) | 209, 341, 386, 2623, 3055 |
| BtgI | CCRYGG | 1 cut(s) | 1624 |
| BtgZI | GCGATG | 1 cut(s) | 845 |
| BtsCI | GGATG | 7 cut(s) | 474, 1955, 1990, 2168, 2186, 2456, 2949 |
| BtsIMutI | CAGTG | 4 cut(s) | 405, 682, 2738, 3283 |
| BveI | ACCTGC | 2 cut(s) | 1475, 2301 |
| Cac8I | GCNNGC | 6 cut(s) | 84, 1374, 1745, 2997, 3085, 3248 |
| CaiI | CAGNNNCTG | 1 cut(s) | 350 |
| CciI | TCATGA | 1 cut(s) | 3121 |
| CfoI | GCGC | 2 cut(s) | 2240, 3119 |
| Cfr10I | RCCGGY | 2 cut(s) | 287, 1046 |
| Cfr13I | GGNCC | 4 cut(s) | 68, 545, 857, 2622 |
| Cfr42I | CCGCGG | 1 cut(s) | 1627 |
| CseI | GACGC | 3 cut(s) | 1157, 1193, 1744 |
| CsiI | ACCWGGT | 1 cut(s) | 2980 |
| Csp6I | GTAC | 4 cut(s) | 818, 2362, 2785, 3211 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1944, 1979, 2013, 2048, 2373, 2408 |
| CviQI | GTAC | 4 cut(s) | 818, 2362, 2785, 3211 |
| DraI | TTTAAA | 3 cut(s) | 2445, 2826, 2920 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1307 |
| EaeI | YGGCCR | 3 cut(s) | 207, 339, 384 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1307 |
| Ecl136II | GAGCTC | 6 cut(s) | 476, 2038, 2182, 2254, 2326, 2567 |
| Eco130I | CCWWGG | 1 cut(s) | 2856 |
| Eco147I | AGGCCT | 1 cut(s) | 3055 |
| Eco24I | GRGCYC | 7 cut(s) | 478, 1082, 2040, 2184, 2256, 2328, 2569 |
| Eco31I | GGTCTC | 1 cut(s) | 2934 |
| Eco47I | GGWCC | 3 cut(s) | 68, 545, 857 |
| Eco53kI | GAGCTC | 6 cut(s) | 476, 2038, 2182, 2254, 2326, 2567 |
| Eco57I | CTGAAG | 6 cut(s) | 972, 1562, 1637, 2405, 2747, 2862 |
| Eco72I | CACGTG | 1 cut(s) | 446 |
| Eco88I | CYCGRG | 2 cut(s) | 1928, 2095 |
| Eco91I | GGTNACC | 3 cut(s) | 353, 1049, 3278 |
| EcoICRI | GAGCTC | 6 cut(s) | 476, 2038, 2182, 2254, 2326, 2567 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 747, 1087 |
| EcoO109I | RGGNCCY | 1 cut(s) | 545 |
| EcoO65I | GGTNACC | 3 cut(s) | 353, 1049, 3278 |
| EcoRI | GAATTC | 2 cut(s) | 1535, 2669 |
| EcoRII | CCWGG | 4 cut(s) | 550, 859, 1420, 2980 |
| EcoT14I | CCWWGG | 1 cut(s) | 2856 |
| EcoT22I | ATGCAT | 1 cut(s) | 1365 |
| EcoT38I | GRGCYC | 7 cut(s) | 478, 1082, 2040, 2184, 2256, 2328, 2569 |
| ErhI | CCWWGG | 1 cut(s) | 2856 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 945, 977, 1254, 1286 |
| FauI | CCCGC | 3 cut(s) | 75, 1631, 3296 |
| FbaI | TGATCA | 4 cut(s) | 390, 1890, 2103, 2742 |
| FblI | GTMKAC | 2 cut(s) | 585, 3164 |
| Fnu4HI | GCNGC | 2 cut(s) | 384, 1482 |
| FokI | GGATG | 7 cut(s) | 481, 1962, 1997, 2173, 2175, 2463, 2936 |
| FriOI | GRGCYC | 7 cut(s) | 478, 1082, 2040, 2184, 2256, 2328, 2569 |
| Fsp4HI | GCNGC | 2 cut(s) | 384, 1482 |
| FspI | TGCGCA | 1 cut(s) | 2239 |
| GlaI | GCGC | 2 cut(s) | 2239, 3118 |
| GluI | GCNGC | 2 cut(s) | 384, 1482 |
| GsuI | CTGGAG | 1 cut(s) | 1867 |
| HaeII | RGCGCY | 1 cut(s) | 3120 |
| HaeIII | GGCC | 5 cut(s) | 209, 341, 386, 2623, 3055 |
| HapII | CCGG | 3 cut(s) | 252, 288, 1047 |
| HgaI | GACGC | 3 cut(s) | 1157, 1193, 1744 |
| HhaI | GCGC | 2 cut(s) | 2240, 3119 |
| Hin6I | GCGC | 2 cut(s) | 2238, 3117 |
| HinP1I | GCGC | 2 cut(s) | 2238, 3117 |
| HindIII | AAGCTT | 3 cut(s) | 324, 843, 1745 |
| HpaII | CCGG | 3 cut(s) | 252, 288, 1047 |
| HphI | GGTGA | 5 cut(s) | 817, 1487, 3002, 3119, 3247 |
| Hpy166II | GTNNAC | 9 cut(s) | 293, 586, 808, 1649, 1705, 1816, 2362, 3165, 3213 |
| Hpy8I | GTNNAC | 9 cut(s) | 293, 586, 808, 1649, 1705, 1816, 2362, 3165, 3213 |
| Hpy99I | CGWCG | 1 cut(s) | 458 |
| HpyCH4III | ACNGT | 8 cut(s) | 202, 346, 498, 605, 677, 1241, 1702, 3278 |
| HpyCH4IV | ACGT | 4 cut(s) | 445, 1308, 1707, 2559 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 347, 842, 1369, 1632, 1744, 2251, 3309 |
| HpySE526I | ACGT | 4 cut(s) | 445, 1308, 1707, 2559 |
| HspAI | GCGC | 2 cut(s) | 2238, 3117 |
| Ksp22I | TGATCA | 4 cut(s) | 390, 1890, 2103, 2742 |
| KspI | CCGCGG | 1 cut(s) | 1627 |
| LguI | GCTCTTC | 2 cut(s) | 966, 1257 |
| Lsp1109I | GCAGC | 1 cut(s) | 1493 |
| MabI | ACCWGGT | 1 cut(s) | 2980 |
| MaeII | ACGT | 4 cut(s) | 445, 1308, 1707, 2559 |
| MbiI | CCGCTC | 1 cut(s) | 2712 |
| MfeI | CAATTG | 2 cut(s) | 570, 1342 |
| MflI | RGATCY | 7 cut(s) | 226, 1939, 2080, 2152, 2224, 2467, 2547 |
| MlsI | TGGCCA | 2 cut(s) | 209, 341 |
| MluNI | TGGCCA | 2 cut(s) | 209, 341 |
| MlyI | GAGTC | 3 cut(s) | 874, 2107, 2861 |
| MmeI | TCCRAC | 2 cut(s) | 634, 2301 |
| Mox20I | TGGCCA | 2 cut(s) | 209, 341 |
| Mph1103I | ATGCAT | 1 cut(s) | 1365 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1395 |
| MscI | TGGCCA | 2 cut(s) | 209, 341 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2507 |
| Msp20I | TGGCCA | 2 cut(s) | 209, 341 |
| MspA1I | CMGCKG | 1 cut(s) | 1626 |
| MspCI | CTTAAG | 1 cut(s) | 1585 |
| MspI | CCGG | 3 cut(s) | 252, 288, 1047 |
| MspR9I | CCNGG | 4 cut(s) | 552, 861, 1422, 2982 |
| MunI | CAATTG | 2 cut(s) | 570, 1342 |
| Mva1269I | GAATGC | 7 cut(s) | 1921, 2062, 2134, 2206, 2278, 2350, 3305 |
| MvaI | CCWGG | 4 cut(s) | 552, 861, 1422, 2982 |
| MvnI | CGCG | 1 cut(s) | 1626 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 347, 842, 1369, 1632, 1744, 2251, 3309 |
| NheI | GCTAGC | 1 cut(s) | 1372 |
| NlaIV | GGNNCC | 8 cut(s) | 228, 546, 664, 1081, 2584, 2624, 2733, 2994 |
| NmuCI | GTSAC | 3 cut(s) | 1598, 3107, 3235 |
| NsbI | TGCGCA | 1 cut(s) | 2239 |
| NsiI | ATGCAT | 1 cut(s) | 1365 |
| NspI | RCATGY | 4 cut(s) | 979, 1230, 1689, 3146 |
| NspV | TTCGAA | 2 cut(s) | 416, 3219 |
| PaeR7I | CTCGAG | 2 cut(s) | 1928, 2095 |
| PagI | TCATGA | 1 cut(s) | 3121 |
| PceI | AGGCCT | 1 cut(s) | 3055 |
| PciI | ACATGT | 2 cut(s) | 1685, 3142 |
| PciSI | GCTCTTC | 2 cut(s) | 966, 1257 |
| PctI | GAATGC | 7 cut(s) | 1921, 2062, 2134, 2206, 2278, 2350, 3305 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1395 |
| PfeI | GAWTC | 9 cut(s) | 21, 59, 739, 870, 1590, 1867, 2492, 2812, 2819 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2221 |
| PkrI | GCNGC | 2 cut(s) | 385, 1483 |
| PleI | GAGTC | 3 cut(s) | 873, 2106, 2860 |
| PmaCI | CACGTG | 1 cut(s) | 446 |
| PmlI | CACGTG | 1 cut(s) | 446 |
| PpsI | GAGTC | 3 cut(s) | 873, 2106, 2860 |
| Ppu21I | YACGTR | 1 cut(s) | 446 |
| PpuMI | RGGWCCY | 1 cut(s) | 545 |
| PscI | ACATGT | 2 cut(s) | 1685, 3142 |
| PshBI | ATTAAT | 6 cut(s) | 429, 1851, 2064, 2136, 2208, 2280 |
| Psp124BI | GAGCTC | 6 cut(s) | 478, 2040, 2184, 2256, 2328, 2569 |
| Psp1406I | AACGTT | 1 cut(s) | 2559 |
| Psp5II | RGGWCCY | 1 cut(s) | 545 |
| Psp6I | CCWGG | 4 cut(s) | 550, 859, 1420, 2980 |
| PspCI | CACGTG | 1 cut(s) | 446 |
| PspEI | GGTNACC | 3 cut(s) | 353, 1049, 3278 |
| PspGI | CCWGG | 4 cut(s) | 550, 859, 1420, 2980 |
| PspN4I | GGNNCC | 8 cut(s) | 228, 546, 664, 1081, 2584, 2624, 2733, 2994 |
| PspPI | GGNCC | 4 cut(s) | 68, 545, 857, 2622 |
| PspPPI | RGGWCCY | 1 cut(s) | 545 |
| PspXI | VCTCGAGB | 1 cut(s) | 2095 |
| PstNI | CAGNNNCTG | 1 cut(s) | 350 |
| PsuI | RGATCY | 7 cut(s) | 226, 1939, 2080, 2152, 2224, 2467, 2547 |
| RsaI | GTAC | 4 cut(s) | 819, 2363, 2786, 3212 |
| RsaNI | GTAC | 4 cut(s) | 818, 2362, 2785, 3211 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2507 |
| SacI | GAGCTC | 6 cut(s) | 478, 2040, 2184, 2256, 2328, 2569 |
| SacII | CCGCGG | 1 cut(s) | 1627 |
| SapI | GCTCTTC | 2 cut(s) | 966, 1257 |
| SatI | GCNGC | 2 cut(s) | 384, 1482 |
| Sau96I | GGNCC | 4 cut(s) | 68, 545, 857, 2622 |
| SchI | GAGTC | 3 cut(s) | 874, 2107, 2861 |
| ScrFI | CCNGG | 4 cut(s) | 552, 861, 1422, 2982 |
| SexAI | ACCWGGT | 1 cut(s) | 2980 |
| SfcI | CTRYAG | 3 cut(s) | 673, 1353, 2409 |
| Sfr274I | CTCGAG | 2 cut(s) | 1928, 2095 |
| Sfr303I | CCGCGG | 1 cut(s) | 1627 |
| SfuI | TTCGAA | 2 cut(s) | 416, 3219 |
| SgrBI | CCGCGG | 1 cut(s) | 1627 |
| SinI | GGWCC | 3 cut(s) | 68, 545, 857 |
| SlaI | CTCGAG | 2 cut(s) | 1928, 2095 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2507 |
| SmlI | CTYRAG | 7 cut(s) | 1585, 1928, 1954, 2095, 2311, 2707, 2777 |
| SmoI | CTYRAG | 7 cut(s) | 1585, 1928, 1954, 2095, 2311, 2707, 2777 |
| SseBI | AGGCCT | 1 cut(s) | 3055 |
| SsiI | CCGC | 8 cut(s) | 82, 383, 1624, 1626, 1775, 2586, 2712, 3303 |
| SstI | GAGCTC | 6 cut(s) | 478, 2040, 2184, 2256, 2328, 2569 |
| StuI | AGGCCT | 1 cut(s) | 3055 |
| StyD4I | CCNGG | 4 cut(s) | 550, 859, 1420, 2980 |
| StyI | CCWWGG | 1 cut(s) | 2856 |
| TaaI | ACNGT | 8 cut(s) | 202, 346, 498, 605, 677, 1241, 1702, 3278 |
| TaiI | ACGT | 4 cut(s) | 448, 1311, 1710, 2562 |
| TaqII | GACCGA | 1 cut(s) | 56 |
| TatI | WGTACW | 3 cut(s) | 817, 2361, 3210 |
| TauI | GCSGC | 1 cut(s) | 386 |
| TfiI | GAWTC | 9 cut(s) | 21, 59, 739, 870, 1590, 1867, 2492, 2812, 2819 |
| TscAI | CASTG | 4 cut(s) | 412, 682, 2745, 3290 |
| TseFI | GTSAC | 3 cut(s) | 1598, 3107, 3235 |
| TseI | GCWGC | 1 cut(s) | 1481 |
| Tsp45I | GTSAC | 3 cut(s) | 1598, 3107, 3235 |
| TspDTI | ATGAA | 9 cut(s) | 188, 393, 506, 1208, 1559, 1769, 2381, 2649, 3018 |
| TspGWI | ACGGA | 1 cut(s) | 2175 |
| TspRI | CASTG | 4 cut(s) | 412, 682, 2745, 3290 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2221 |
| Vha464I | CTTAAG | 1 cut(s) | 1585 |
| VpaK11BI | GGWCC | 3 cut(s) | 68, 545, 857 |
| VspI | ATTAAT | 6 cut(s) | 429, 1851, 2064, 2136, 2208, 2280 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 747, 1087 |
| XapI | RAATTY | 4 cut(s) | 994, 1207, 1535, 2669 |
| XceI | RCATGY | 4 cut(s) | 979, 1230, 1689, 3146 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3290 |
| XhoI | CTCGAG | 2 cut(s) | 1928, 2095 |
| XmiI | GTMKAC | 2 cut(s) | 585, 3164 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1395 |
| Zsp2I | ATGCAT | 1 cut(s) | 1365 |