Disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 97 - 274 | 5.5e-65 | TIR domain |
| TIR_2 | PF13676 | 100 - 195 | 2e-11 | TIR domain |
| NB-ARC | PF00931 | 287 - 449 | 6.5e-14 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 517 - 584 | 5.1e-12 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 692 - 711 | 9.2e-08 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 774 - 985 | 1.3e-12 | Leucine-rich repeat region |
| C-JID | PF20160 | 1039 - 1132 | 3.2e-11 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1397 |
| AccI | GTMKAC | 1 cut(s) | 1840 |
| AccIII | TCCGGA | 1 cut(s) | 2068 |
| AciI | CCGC | 6 cut(s) | 902, 1441, 2334, 2448, 2819, 3477 |
| AclWI | GGATC | 6 cut(s) | 457, 575, 1167, 1274, 3028, 3534 |
| AcoI | YGGCCR | 1 cut(s) | 516 |
| AcsI | RAATTY | 3 cut(s) | 202, 611, 2813 |
| AcuI | CTGAAG | 1 cut(s) | 2450 |
| AfaI | GTAC | 3 cut(s) | 1025, 1908, 3124 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 868, 911, 1358 |
| AflIII | ACRYGT | 2 cut(s) | 635, 774 |
| AgeI | ACCGGT | 1 cut(s) | 605 |
| AjnI | CCWGG | 3 cut(s) | 904, 1210, 3118 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1407, 1439 |
| Alw21I | GWGCWC | 8 cut(s) | 432, 832, 1033, 1818, 2259, 2400, 2715, 3518 |
| Alw44I | GTGCAC | 1 cut(s) | 1029 |
| AlwI | GGATC | 6 cut(s) | 457, 575, 1167, 1274, 3028, 3534 |
| Ama87I | CYCGRG | 2 cut(s) | 304, 2999 |
| Aor13HI | TCCGGA | 1 cut(s) | 2068 |
| AoxI | GGCC | 1 cut(s) | 516 |
| ApaLI | GTGCAC | 1 cut(s) | 1029 |
| ApeKI | GCWGC | 2 cut(s) | 185, 2845 |
| ApoI | RAATTY | 3 cut(s) | 202, 611, 2813 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 532, 564 |
| AsiGI | ACCGGT | 1 cut(s) | 605 |
| AspLEI | GCGC | 1 cut(s) | 861 |
| AspS9I | GGNCC | 3 cut(s) | 422, 899, 1208 |
| AsuHPI | GGTGA | 4 cut(s) | 620, 1412, 2548, 3421 |
| AvaI | CYCGRG | 2 cut(s) | 304, 2999 |
| AvaII | GGWCC | 3 cut(s) | 422, 899, 1208 |
| BaeGI | GKGCMC | 1 cut(s) | 1033 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3114, 3147 |
| BanII | GRGCYC | 6 cut(s) | 432, 832, 2259, 2400, 2715, 3518 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 226, 258 |
| BbsI | GAAGAC | 2 cut(s) | 292, 1643 |
| Bbv12I | GWGCWC | 8 cut(s) | 432, 832, 1033, 1818, 2259, 2400, 2715, 3518 |
| BbvI | GCAGC | 2 cut(s) | 197, 2832 |
| BccI | CCATC | 7 cut(s) | 663, 802, 1194, 1303, 1682, 2149, 2482 |
| BceAI | ACGGC | 2 cut(s) | 173, 1606 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 69, 103, 1355, 1389 |
| BciT130I | CCWGG | 3 cut(s) | 906, 1212, 3120 |
| BciVI | GTATCC | 2 cut(s) | 1848, 3474 |
| BclI | TGATCA | 2 cut(s) | 1068, 3268 |
| BfaI | CTAG | 9 cut(s) | 863, 1175, 1244, 1427, 1491, 1950, 2172, 2606, 3555 |
| BfmI | CTRYAG | 2 cut(s) | 1970, 2553 |
| BfuAI | ACCTGC | 1 cut(s) | 1397 |
| BfuI | GTATCC | 2 cut(s) | 1848, 3474 |
| BglII | AGATCT | 5 cut(s) | 1240, 1987, 2299, 2691, 3082 |
| BisI | GCNGC | 2 cut(s) | 186, 2846 |
| BlsI | GCNGC | 2 cut(s) | 187, 2847 |
| BmcAI | AGTACT | 1 cut(s) | 1908 |
| Bme1390I | CCNGG | 3 cut(s) | 906, 1212, 3120 |
| Bme18I | GGWCC | 3 cut(s) | 422, 899, 1208 |
| BmeT110I | CYCGRG | 2 cut(s) | 304, 2999 |
| BmgT120I | GGNCC | 3 cut(s) | 422, 899, 1208 |
| BmiI | GGNNCC | 1 cut(s) | 900 |
| BmrFI | CCNGG | 3 cut(s) | 906, 1212, 3120 |
| BmsI | GCATC | 7 cut(s) | 91, 986, 1168, 1936, 2441, 2585, 3097 |
| BpiI | GAAGAC | 2 cut(s) | 292, 1643 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2246, 2278, 2881, 2913 |
| BpmI | CTGGAG | 1 cut(s) | 745 |
| Bpu10I | CCTNAGC | 2 cut(s) | 426, 2714 |
| BpuEI | CTTGAG | 9 cut(s) | 460, 1095, 2132, 2227, 2342, 2368, 2440, 2512, 3232 |
| Bsa29I | ATCGAT | 1 cut(s) | 1944 |
| BsaAI | YACGTR | 1 cut(s) | 2906 |
| BsaBI | GATNNNNATC | 3 cut(s) | 461, 1226, 1557 |
| BsaI | GGTCTC | 1 cut(s) | 2772 |
| BsaJI | CCNNGG | 8 cut(s) | 149, 313, 905, 1182, 1478, 1878, 2879, 3417 |
| BsaWI | WCCGGW | 2 cut(s) | 605, 2068 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 145, 175, 309, 339 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 868, 911, 1358 |
| Bse118I | RCCGGY | 1 cut(s) | 605 |
| Bse1I | ACTGG | 3 cut(s) | 290, 2030, 3012 |
| Bse8I | GATNNNNATC | 3 cut(s) | 461, 1226, 1557 |
| BseAI | TCCGGA | 1 cut(s) | 2068 |
| BseBI | CCWGG | 3 cut(s) | 906, 1212, 3120 |
| BseCI | ATCGAT | 1 cut(s) | 1944 |
| BseDI | CCNNGG | 8 cut(s) | 149, 313, 905, 1182, 1478, 1878, 2879, 3417 |
| BseJI | GATNNNNATC | 3 cut(s) | 461, 1226, 1557 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 868, 911, 1358 |
| BseMII | CTCAG | 7 cut(s) | 96, 417, 1679, 1953, 2679, 2684, 2728 |
| BseNI | ACTGG | 3 cut(s) | 290, 2030, 3012 |
| BseRI | GAGGAG | 4 cut(s) | 421, 2254, 2760, 3419 |
| BseSI | GKGCMC | 1 cut(s) | 1033 |
| BseXI | GCAGC | 2 cut(s) | 197, 2832 |
| Bsh1285I | CGRYCG | 1 cut(s) | 420 |
| BshFI | GGCC | 1 cut(s) | 518 |
| BshTI | ACCGGT | 1 cut(s) | 605 |
| BshVI | ATCGAT | 1 cut(s) | 1944 |
| BsiEI | CGRYCG | 1 cut(s) | 420 |
| BsiHKAI | GWGCWC | 8 cut(s) | 432, 832, 1033, 1818, 2259, 2400, 2715, 3518 |
| BsiHKCI | CYCGRG | 2 cut(s) | 304, 2999 |
| BsiSI | CCGG | 6 cut(s) | 606, 705, 2069, 3511, 3524, 3536 |
| BslFI | GGGAC | 4 cut(s) | 912, 1045, 2980, 3317 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 868, 911, 1358 |
| BsmBI | CGTCTC | 1 cut(s) | 3044 |
| BsmFI | GGGAC | 4 cut(s) | 912, 1045, 2980, 3317 |
| BsmI | GAATGC | 3 cut(s) | 1336, 2350, 3479 |
| BsnI | GGCC | 1 cut(s) | 518 |
| Bso31I | GGTCTC | 1 cut(s) | 2772 |
| BsoBI | CYCGRG | 2 cut(s) | 304, 2999 |
| Bsp1286I | GDGCHC | 8 cut(s) | 432, 832, 1033, 1818, 2259, 2400, 2715, 3518 |
| Bsp13I | TCCGGA | 1 cut(s) | 2068 |
| Bsp19I | CCATGG | 2 cut(s) | 149, 2879 |
| BspACI | CCGC | 6 cut(s) | 902, 1441, 2334, 2448, 2819, 3477 |
| BspANI | GGCC | 1 cut(s) | 518 |
| BspCNI | CTCAG | 7 cut(s) | 97, 418, 1678, 1954, 2680, 2683, 2727 |
| BspDI | ATCGAT | 1 cut(s) | 1944 |
| BspEI | TCCGGA | 1 cut(s) | 2068 |
| BspHI | TCATGA | 3 cut(s) | 525, 558, 1086 |
| BspLI | GGNNCC | 1 cut(s) | 900 |
| BspMAI | CTGCAG | 1 cut(s) | 1974 |
| BspMI | ACCTGC | 1 cut(s) | 1397 |
| BspPI | GGATC | 6 cut(s) | 457, 575, 1167, 1274, 3028, 3534 |
| BspQI | GCTCTTC | 2 cut(s) | 2619, 3523 |
| BspTNI | GGTCTC | 1 cut(s) | 2772 |
| BsrFI | RCCGGY | 1 cut(s) | 605 |
| BsrI | ACTGG | 3 cut(s) | 290, 2030, 3012 |
| BssAI | RCCGGY | 1 cut(s) | 605 |
| BssECI | CCNNGG | 8 cut(s) | 149, 313, 905, 1182, 1478, 1878, 2879, 3417 |
| BssSI | CACGAG | 3 cut(s) | 2281, 2462, 3546 |
| BssT1I | CCWWGG | 4 cut(s) | 149, 1182, 1478, 2879 |
| Bst2BI | CACGAG | 3 cut(s) | 2281, 2462, 3546 |
| Bst2UI | CCWGG | 3 cut(s) | 906, 1212, 3120 |
| Bst4CI | ACNGT | 4 cut(s) | 1028, 1119, 1524, 3569 |
| Bst6I | CTCTTC | 5 cut(s) | 258, 1726, 2619, 3204, 3523 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1714 |
| BstBAI | YACGTR | 1 cut(s) | 2906 |
| BstC8I | GCNNGC | 4 cut(s) | 536, 2823, 3135, 3139 |
| BstDSI | CCRYGG | 4 cut(s) | 149, 313, 2879, 3417 |
| BstHHI | GCGC | 1 cut(s) | 861 |
| BstMCI | CGRYCG | 1 cut(s) | 420 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 191, 701, 1714 |
| BstNI | CCWGG | 3 cut(s) | 906, 1212, 3120 |
| BstNSI | RCATGY | 3 cut(s) | 639, 778, 2825 |
| BstSCI | CCNGG | 3 cut(s) | 904, 1210, 3118 |
| BstSFI | CTRYAG | 2 cut(s) | 1970, 2553 |
| BstSLI | GKGCMC | 1 cut(s) | 1033 |
| BstV1I | GCAGC | 2 cut(s) | 197, 2832 |
| BstV2I | GAAGAC | 2 cut(s) | 292, 1643 |
| BstX2I | RGATCY | 7 cut(s) | 1240, 1987, 2299, 2691, 3033, 3082, 3526 |
| BstYI | RGATCY | 7 cut(s) | 1240, 1987, 2299, 2691, 3033, 3082, 3526 |
| Bsu15I | ATCGAT | 1 cut(s) | 1944 |
| BsuI | GTATCC | 2 cut(s) | 1848, 3474 |
| BsuRI | GGCC | 1 cut(s) | 518 |
| BsuTUI | ATCGAT | 1 cut(s) | 1944 |
| BtgI | CCRYGG | 4 cut(s) | 149, 313, 2879, 3417 |
| BtgZI | GCGATG | 1 cut(s) | 3125 |
| BtsIMutI | CAGTG | 6 cut(s) | 184, 759, 1033, 2018, 2493, 3565 |
| BveI | ACCTGC | 1 cut(s) | 1397 |
| Cac8I | GCNNGC | 4 cut(s) | 536, 2823, 3135, 3139 |
| CciI | TCATGA | 3 cut(s) | 525, 558, 1086 |
| CfoI | GCGC | 1 cut(s) | 861 |
| Cfr10I | RCCGGY | 1 cut(s) | 605 |
| Cfr13I | GGNCC | 3 cut(s) | 422, 899, 1208 |
| ClaI | ATCGAT | 1 cut(s) | 1944 |
| CseI | GACGC | 1 cut(s) | 2548 |
| Csp6I | GTAC | 3 cut(s) | 1024, 1907, 3123 |
| CspAI | ACCGGT | 1 cut(s) | 605 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2232, 2267, 3406, 3441 |
| CviQI | GTAC | 3 cut(s) | 1024, 1907, 3123 |
| EaeI | YGGCCR | 1 cut(s) | 516 |
| Eam1104I | CTCTTC | 5 cut(s) | 258, 1726, 2619, 3204, 3523 |
| EarI | CTCTTC | 5 cut(s) | 258, 1726, 2619, 3204, 3523 |
| Ecl136II | GAGCTC | 6 cut(s) | 430, 830, 2257, 2398, 2713, 3516 |
| Eco130I | CCWWGG | 4 cut(s) | 149, 1182, 1478, 2879 |
| Eco24I | GRGCYC | 6 cut(s) | 432, 832, 2259, 2400, 2715, 3518 |
| Eco31I | GGTCTC | 1 cut(s) | 2772 |
| Eco32I | GATATC | 3 cut(s) | 710, 1084, 2491 |
| Eco47I | GGWCC | 3 cut(s) | 422, 899, 1208 |
| Eco53kI | GAGCTC | 6 cut(s) | 430, 830, 2257, 2398, 2713, 3516 |
| Eco57I | CTGAAG | 1 cut(s) | 2450 |
| Eco88I | CYCGRG | 2 cut(s) | 304, 2999 |
| EcoICRI | GAGCTC | 6 cut(s) | 430, 830, 2257, 2398, 2713, 3516 |
| EcoRI | GAATTC | 1 cut(s) | 2813 |
| EcoRII | CCWGG | 3 cut(s) | 904, 1210, 3118 |
| EcoRV | GATATC | 3 cut(s) | 710, 1084, 2491 |
| EcoT14I | CCWWGG | 4 cut(s) | 149, 1182, 1478, 2879 |
| EcoT22I | ATGCAT | 1 cut(s) | 1710 |
| EcoT38I | GRGCYC | 6 cut(s) | 432, 832, 2259, 2400, 2715, 3518 |
| ErhI | CCWWGG | 4 cut(s) | 149, 1182, 1478, 2879 |
| Esp3I | CGTCTC | 1 cut(s) | 3044 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 223, 255, 1125, 1157, 1605, 1637, 1723, 1755 |
| FaqI | GGGAC | 4 cut(s) | 912, 1045, 2980, 3317 |
| FauI | CCCGC | 4 cut(s) | 1434, 2341, 2826, 3470 |
| FauNDI | CATATG | 2 cut(s) | 834, 1704 |
| FbaI | TGATCA | 2 cut(s) | 1068, 3268 |
| FblI | GTMKAC | 1 cut(s) | 1840 |
| Fnu4HI | GCNGC | 2 cut(s) | 186, 2846 |
| FriOI | GRGCYC | 6 cut(s) | 432, 832, 2259, 2400, 2715, 3518 |
| Fsp4HI | GCNGC | 2 cut(s) | 186, 2846 |
| FspBI | CTAG | 9 cut(s) | 863, 1175, 1244, 1427, 1491, 1950, 2172, 2606, 3555 |
| GlaI | GCGC | 1 cut(s) | 860 |
| GluI | GCNGC | 2 cut(s) | 186, 2846 |
| GsuI | CTGGAG | 1 cut(s) | 745 |
| HaeIII | GGCC | 1 cut(s) | 518 |
| HapII | CCGG | 6 cut(s) | 606, 705, 2069, 3511, 3524, 3536 |
| HgaI | GACGC | 1 cut(s) | 2548 |
| HhaI | GCGC | 1 cut(s) | 861 |
| Hin6I | GCGC | 1 cut(s) | 859 |
| HinP1I | GCGC | 1 cut(s) | 859 |
| HincII | GTYRAC | 1 cut(s) | 3289 |
| HindII | GTYRAC | 1 cut(s) | 3289 |
| HindIII | AAGCTT | 2 cut(s) | 678, 2228 |
| HpaII | CCGG | 6 cut(s) | 606, 705, 2069, 3511, 3524, 3536 |
| HphI | GGTGA | 4 cut(s) | 620, 1412, 2548, 3421 |
| Hpy166II | GTNNAC | 8 cut(s) | 647, 1031, 1279, 1403, 1841, 2903, 3125, 3289 |
| Hpy8I | GTNNAC | 8 cut(s) | 647, 1031, 1279, 1403, 1841, 2903, 3125, 3289 |
| Hpy99I | CGWCG | 3 cut(s) | 812, 1502, 1823 |
| HpyAV | CCTTC | 9 cut(s) | 634, 1249, 1352, 1414, 2064, 2117, 2556, 2573, 3181 |
| HpyCH4III | ACNGT | 4 cut(s) | 1028, 1119, 1524, 3569 |
| HpyCH4IV | ACGT | 4 cut(s) | 1777, 1843, 2905, 3399 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 191, 701, 1714 |
| HpySE526I | ACGT | 4 cut(s) | 1777, 1843, 2905, 3399 |
| HspAI | GCGC | 1 cut(s) | 859 |
| Kpn2I | TCCGGA | 1 cut(s) | 2068 |
| Ksp22I | TGATCA | 2 cut(s) | 1068, 3268 |
| LguI | GCTCTTC | 2 cut(s) | 2619, 3523 |
| Lsp1109I | GCAGC | 2 cut(s) | 197, 2832 |
| LweI | GCATC | 7 cut(s) | 91, 986, 1168, 1936, 2441, 2585, 3097 |
| MaeI | CTAG | 9 cut(s) | 863, 1175, 1244, 1427, 1491, 1950, 2172, 2606, 3555 |
| MaeII | ACGT | 4 cut(s) | 1777, 1843, 2905, 3399 |
| MaeIII | GTNAC | 7 cut(s) | 344, 1384, 1529, 1544, 2033, 2536, 3409 |
| MfeI | CAATTG | 4 cut(s) | 851, 1034, 2435, 2481 |
| MflI | RGATCY | 7 cut(s) | 1240, 1987, 2299, 2691, 3033, 3082, 3526 |
| MhlI | GDGCHC | 8 cut(s) | 432, 832, 1033, 1818, 2259, 2400, 2715, 3518 |
| MlyI | GAGTC | 5 cut(s) | 140, 180, 2293, 2326, 3200 |
| MmeI | TCCRAC | 5 cut(s) | 238, 608, 978, 988, 1199 |
| Mph1103I | ATGCAT | 1 cut(s) | 1710 |
| MroI | TCCGGA | 1 cut(s) | 2068 |
| MslI | CAYNNNNRTG | 1 cut(s) | 179 |
| MspA1I | CMGCKG | 1 cut(s) | 723 |
| MspI | CCGG | 6 cut(s) | 606, 705, 2069, 3511, 3524, 3536 |
| MspR9I | CCNGG | 3 cut(s) | 906, 1212, 3120 |
| MunI | CAATTG | 4 cut(s) | 851, 1034, 2435, 2481 |
| Mva1269I | GAATGC | 3 cut(s) | 1336, 2350, 3479 |
| MvaI | CCWGG | 3 cut(s) | 906, 1212, 3120 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 191, 701, 1714 |
| NcoI | CCATGG | 2 cut(s) | 149, 2879 |
| NdeI | CATATG | 2 cut(s) | 834, 1704 |
| NlaIV | GGNNCC | 1 cut(s) | 900 |
| NmeAIII | GCCGAG | 1 cut(s) | 544 |
| NmuCI | GTSAC | 4 cut(s) | 344, 1544, 2536, 3409 |
| NsiI | ATGCAT | 1 cut(s) | 1710 |
| NspI | RCATGY | 3 cut(s) | 639, 778, 2825 |
| PaeI | GCATGC | 1 cut(s) | 2825 |
| PaeR7I | CTCGAG | 1 cut(s) | 2999 |
| PagI | TCATGA | 3 cut(s) | 525, 558, 1086 |
| PciI | ACATGT | 2 cut(s) | 635, 774 |
| PciSI | GCTCTTC | 2 cut(s) | 2619, 3523 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 76, 1941, 2759 |
| PctI | GAATGC | 3 cut(s) | 1336, 2350, 3479 |
| PflFI | GACNNNGTC | 1 cut(s) | 3293 |
| PfoI | TCCNGGA | 1 cut(s) | 1210 |
| PinAI | ACCGGT | 1 cut(s) | 605 |
| PkrI | GCNGC | 2 cut(s) | 187, 2847 |
| Ple19I | CGATCG | 1 cut(s) | 420 |
| PleI | GAGTC | 5 cut(s) | 139, 179, 2292, 2325, 3199 |
| PpsI | GAGTC | 5 cut(s) | 139, 179, 2292, 2325, 3199 |
| Ppu21I | YACGTR | 1 cut(s) | 2906 |
| PscI | ACATGT | 2 cut(s) | 635, 774 |
| Psp124BI | GAGCTC | 6 cut(s) | 432, 832, 2259, 2400, 2715, 3518 |
| Psp6I | CCWGG | 3 cut(s) | 904, 1210, 3118 |
| PspGI | CCWGG | 3 cut(s) | 904, 1210, 3118 |
| PspN4I | GGNNCC | 1 cut(s) | 900 |
| PspPI | GGNCC | 3 cut(s) | 422, 899, 1208 |
| PstI | CTGCAG | 1 cut(s) | 1974 |
| PsuI | RGATCY | 7 cut(s) | 1240, 1987, 2299, 2691, 3033, 3082, 3526 |
| PsyI | GACNNNGTC | 1 cut(s) | 3293 |
| PvuI | CGATCG | 1 cut(s) | 420 |
| PvuII | CAGCTG | 1 cut(s) | 723 |
| RsaI | GTAC | 3 cut(s) | 1025, 1908, 3124 |
| RsaNI | GTAC | 3 cut(s) | 1024, 1907, 3123 |
| RseI | CAYNNNNRTG | 1 cut(s) | 179 |
| SacI | GAGCTC | 6 cut(s) | 432, 832, 2259, 2400, 2715, 3518 |
| SapI | GCTCTTC | 2 cut(s) | 2619, 3523 |
| SatI | GCNGC | 2 cut(s) | 186, 2846 |
| Sau96I | GGNCC | 3 cut(s) | 422, 899, 1208 |
| ScaI | AGTACT | 1 cut(s) | 1908 |
| SchI | GAGTC | 5 cut(s) | 140, 180, 2293, 2326, 3200 |
| ScrFI | CCNGG | 3 cut(s) | 906, 1212, 3120 |
| SduI | GDGCHC | 8 cut(s) | 432, 832, 1033, 1818, 2259, 2400, 2715, 3518 |
| SfaNI | GCATC | 7 cut(s) | 91, 986, 1168, 1936, 2441, 2585, 3097 |
| SfcI | CTRYAG | 2 cut(s) | 1970, 2553 |
| Sfr274I | CTCGAG | 1 cut(s) | 2999 |
| SinI | GGWCC | 3 cut(s) | 422, 899, 1208 |
| SlaI | CTCGAG | 1 cut(s) | 2999 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 179 |
| SphI | GCATGC | 1 cut(s) | 2825 |
| SsiI | CCGC | 6 cut(s) | 902, 1441, 2334, 2448, 2819, 3477 |
| SspI | AATATT | 2 cut(s) | 2295, 2443 |
| SspMI | CTAG | 9 cut(s) | 863, 1175, 1244, 1427, 1491, 1950, 2172, 2606, 3555 |
| SstI | GAGCTC | 6 cut(s) | 432, 832, 2259, 2400, 2715, 3518 |
| StyD4I | CCNGG | 3 cut(s) | 904, 1210, 3118 |
| StyI | CCWWGG | 4 cut(s) | 149, 1182, 1478, 2879 |
| TaaI | ACNGT | 4 cut(s) | 1028, 1119, 1524, 3569 |
| TaiI | ACGT | 4 cut(s) | 1780, 1846, 2908, 3402 |
| TaqII | GACCGA | 1 cut(s) | 410 |
| TatI | WGTACW | 2 cut(s) | 1023, 1906 |
| TscAI | CASTG | 6 cut(s) | 184, 766, 1033, 2025, 2500, 3572 |
| TseFI | GTSAC | 4 cut(s) | 344, 1544, 2536, 3409 |
| TseI | GCWGC | 2 cut(s) | 185, 2845 |
| Tsp45I | GTSAC | 4 cut(s) | 344, 1544, 2536, 3409 |
| TspGWI | ACGGA | 5 cut(s) | 330, 1515, 2348, 3026, 3434 |
| TspRI | CASTG | 6 cut(s) | 184, 766, 1033, 2025, 2500, 3572 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3293 |
| VneI | GTGCAC | 1 cut(s) | 1029 |
| VpaK11BI | GGWCC | 3 cut(s) | 422, 899, 1208 |
| XapI | RAATTY | 3 cut(s) | 202, 611, 2813 |
| XceI | RCATGY | 3 cut(s) | 639, 778, 2825 |
| XhoI | CTCGAG | 1 cut(s) | 2999 |
| XmiI | GTMKAC | 1 cut(s) | 1840 |
| XspI | CTAG | 9 cut(s) | 863, 1175, 1244, 1427, 1491, 1950, 2172, 2606, 3555 |
| ZrmI | AGTACT | 1 cut(s) | 1908 |
| Zsp2I | ATGCAT | 1 cut(s) | 1710 |