Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005091

Physical Location & Seq

Genomic Coordinates Forward (+)

6612480 .. 6615457

Gene Structure 2978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G15230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAAATGGTTGCTCGTCGCCGTATTGACCTCTCTTACGATCTTCTCCGCCTTAACACAGTCCCATCTCCTCCATGGATCTCCGGTCAATTCTCTCTGCGCTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACAGTATTCAAACAAAGGATGGTTACATATTAGCTCTTCAACGTGTAGCTTCTCTTGGTCCAAGACTTCAATCTGGTCCACCTGTTTTGCTTCAGCACGGTCTCTTTATGGCTGGAGATGTGTGGTTCTTGAATTCACCAAAAGAGTCACTAGGTTTCATTCTTGCTGATCATGGGTTTGATGTTTGGGTTGGAAATGTTCGTGGTACACGTTACAGTTATGGACATGTAACTTTGTCTGACACTGATAAGGAGTTTTGGGACTGGAGTTGGCAAGATTTGGCAATGTATGACTTGGCAGAAATGATTCAGTATCTGTATTCAATTTCAAACTCCAAAATTTTCCTTGTTGGACATTCTCAGGGGACTATCATGTCTTTTGCTGCTCTTACTCAGCCGCATGTTGCGGAAATGGTTGAAGCAGCTGCGTTGCTTTGTCCAATATCATATTTGGATCATGTCACAGCTCCTCTTGTTGAAAGAATGGTTTTTATGCATCTCGATCAGATGGTAGTTGCTCTTGGGCTGCATCAAATAAACTTTAGAAGTGATATGTTAGTTAAACTTGTTGATTCGTTATGCGAAGGGCATATGGATTGCACTGATTTCCTCACATCCATAACAGGGACGAATTGTTGTTTCAACGCCTCGAAGATAGAATACTATCTAGATTACGAGCCTCACCCATCATCTGTCAAGAATATTCGACATCTTTTCCAAATGATTCGGAAGGGAACCTTTGCACAATACGACTACGGGTATTTCAAAAATCTACGGACTTATGGGCTGTCGAAACCTCCAGAATTCATACTAAGCCACATCCCGGCATCATTACCAATGTGGATGGGGTATGGTGGAACTGATGGTTTAGCAGATGTGACAGATGTGGAACATACTCTCGCGGAACTACCTTCCAGTCCAGAGTTACTATATCTTGAGGATTATGGTCACATTGACTTTGTGCTTGGCTCAAGTGCTAAAGAAGATGTCTATAAGCACATGATTCAATTTTTCAGAGCAAAGGTTAAGTCTAGTAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005576 GO:0005615 GO:0016298 GO:0016787 GO:0016788 GO:0044421 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00100 ko04142 ko04979 map00100 map04142 map04979

Pfam Domains

Protein Families

Abhydro_lipase Hydrolase_4

Protein Analysis

393

Amino Acids

44.23

Weight (kDa)

5.61

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	34 - 91	5.3e-18	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	73 - 215	6.3e-12	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15230
fragaria_vesca	FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050
malus_domestica	MD07G1242000.v1.1 MD10G1098600.v1.1
prunus_persica	Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1
pyrus_communis	pycom10g08450
rosa_chinensis	RchiOBHm_Chr6g0254931
rosa_laevigata	RLG00000014877
rosa_multiflora	Rmu_sc0000016.1_g000012 Rmu_sc0005039.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210470
rosa_rugosa	Rorug05G0555300 Rorug05G0555400 Rorug05G0555500
rosa_samantha	Rh6AG072900 Rh6BG065100 Rh6CG064900 Rh6DG061900
rosa_wichuraiana	Rw0G002710 Rw6G006350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	511
AccII	CGCG	1 cut(s)	1040
AciI	CCGC	5 cut(s)	48, 117, 536, 545, 1040
AclWI	GGATC	2 cut(s)	85, 600
AcsI	RAATTY	3 cut(s)	271, 477, 941
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	2 cut(s)	762, 961
AflIII	ACRYGT	3 cut(s)	181, 347, 364
AluBI	AGCT	4 cut(s)	173, 188, 563, 605
AluI	AGCT	4 cut(s)	173, 188, 563, 605
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	85, 600
AlwNI	CAGNNNCTG	1 cut(s)	454
ApeKI	GCWGC	4 cut(s)	521, 560, 563, 664
ApoI	RAATTY	3 cut(s)	271, 477, 941
ArsI	GACNNNNNNTTYG	1 cut(s)	1151
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	197, 215
AsuC2I	CCSGG	1 cut(s)	962
AsuHPI	GGTGA	2 cut(s)	267, 812
AvaII	GGWCC	2 cut(s)	197, 215
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BbvI	GCAGC	4 cut(s)	508, 550, 572, 651
BccI	CCATC	6 cut(s)	72, 152, 640, 832, 976, 995
BceAI	ACGGC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	962
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	3 cut(s)	290, 806, 1170
BisI	GCNGC	5 cut(s)	522, 536, 561, 564, 665
BlsI	GCNGC	5 cut(s)	523, 537, 562, 565, 666
Bme1390I	CCNGG	1 cut(s)	962
Bme18I	GGWCC	2 cut(s)	197, 215
BmgT120I	GGNCC	2 cut(s)	197, 215
BmiI	GGNNCC	1 cut(s)	874
BmrFI	CCNGG	1 cut(s)	962
BmsI	GCATC	3 cut(s)	643, 676, 974
BpmI	CTGGAG	3 cut(s)	273, 424, 921
BpuEI	CTTGAG	2 cut(s)	1093, 1094
BpuMI	CCSGG	1 cut(s)	962
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	762, 961
Bse1I	ACTGG	2 cut(s)	407, 1053
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	5 cut(s)	112, 163, 752, 957, 987
BseLI	CCNNNNNNNGG	2 cut(s)	762, 961
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	512, 545
BseNI	ACTGG	2 cut(s)	407, 1053
BseRI	GAGGAG	2 cut(s)	59, 597
BseXI	GCAGC	4 cut(s)	508, 550, 572, 651
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	1040
BsiSI	CCGG	2 cut(s)	83, 962
BslFI	GGGAC	4 cut(s)	46, 413, 517, 778
BslI	CCNNNNNNNGG	2 cut(s)	762, 961
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	4 cut(s)	46, 413, 517, 778
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	5 cut(s)	48, 117, 536, 545, 1040
BspCNI	CTCAG	2 cut(s)	511, 544
BspFNI	CGCG	1 cut(s)	1040
BspLI	GGNNCC	1 cut(s)	874
BspPI	GGATC	2 cut(s)	85, 600
BspQI	GCTCTTC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	407, 1053
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
BssT1I	CCWWGG	1 cut(s)	73
Bst4CI	ACNGT	4 cut(s)	60, 143, 239, 356
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	498, 531, 950
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	5 cut(s)	112, 163, 752, 957, 987
BstFNI	CGCG	1 cut(s)	1040
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	6 cut(s)	42, 80, 106, 310, 595, 643
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
BstNSI	RCATGY	2 cut(s)	368, 542
BstSCI	CCNGG	1 cut(s)	960
BstUI	CGCG	1 cut(s)	1040
BstV1I	GCAGC	4 cut(s)	508, 550, 572, 651
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	5 cut(s)	112, 163, 752, 957, 987
BtsIMutI	CAGTG	3 cut(s)	132, 381, 738
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	197, 215
Csp6I	GTAC	1 cut(s)	345
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	7 cut(s)	74, 311, 365, 511, 539, 596, 1138
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	3 cut(s)	498, 531, 950
DpnI	GATC	6 cut(s)	41, 79, 105, 309, 594, 642
DpnII	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	197, 215
Eco57I	CTGAAG	1 cut(s)	215
EcoRI	GAATTC	2 cut(s)	271, 941
EcoT14I	CCWWGG	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	7 cut(s)	77, 314, 368, 514, 542, 599, 1141
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FaqI	GGGAC	4 cut(s)	46, 413, 517, 778
FatI	CATG	7 cut(s)	73, 310, 364, 510, 538, 595, 1137
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	729
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	522, 536, 561, 564, 665
FokI	GGATG	5 cut(s)	99, 170, 739, 944, 994
Fsp4HI	GCNGC	5 cut(s)	522, 536, 561, 564, 665
FspBI	CTAG	3 cut(s)	290, 806, 1170
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	5 cut(s)	522, 536, 561, 564, 665
GsuI	CTGGAG	3 cut(s)	273, 424, 921
HapII	CCGG	2 cut(s)	83, 962
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	7 cut(s)	77, 314, 368, 514, 542, 599, 1141
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	5 cut(s)	284, 445, 710, 862, 1141
HpaII	CCGG	2 cut(s)	83, 962
HphI	GGTGA	2 cut(s)	267, 812
Hpy166II	GTNNAC	2 cut(s)	218, 347
Hpy188I	TCNGA	4 cut(s)	379, 645, 867, 1154
Hpy188III	TCNNGA	7 cut(s)	268, 638, 806, 835, 938, 1058, 1073
Hpy8I	GTNNAC	2 cut(s)	218, 347
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	716, 862, 1059
HpyCH4III	ACNGT	4 cut(s)	60, 143, 239, 356
HpyCH4IV	ACGT	2 cut(s)	181, 349
HpyCH4V	TGCA	5 cut(s)	132, 634, 667, 738, 881
HpyF3I	CTNAG	3 cut(s)	498, 531, 950
HpySE526I	ACGT	2 cut(s)	181, 349
Hsp92II	CATG	7 cut(s)	77, 314, 368, 514, 542, 599, 1141
HspAI	GCGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	4 cut(s)	508, 550, 572, 651
LweI	GCATC	3 cut(s)	643, 676, 974
MaeI	CTAG	3 cut(s)	290, 806, 1170
MaeII	ACGT	2 cut(s)	181, 349
MaeIII	GTNAC	8 cut(s)	161, 285, 350, 367, 598, 1015, 1062, 1085
MalI	GATC	6 cut(s)	41, 79, 105, 309, 594, 642
MboI	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
MboII	GAAGA	4 cut(s)	34, 167, 802, 1133
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	8 cut(s)	88, 121, 271, 462, 477, 769, 941, 1145
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	2 cut(s)	310, 469
MnlI	CCTC	8 cut(s)	40, 80, 618, 758, 796, 828, 945, 1069
Mph1103I	ATGCAT	1 cut(s)	636
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	3 cut(s)	53, 699, 1164
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	2 cut(s)	83, 962
MspR9I	CCNGG	1 cut(s)	962
MvnI	CGCG	1 cut(s)	1040
NciI	CCSGG	1 cut(s)	962
NcoI	CCATGG	1 cut(s)	73
NdeI	CATATG	1 cut(s)	729
NdeII	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
NlaIII	CATG	7 cut(s)	77, 314, 368, 514, 542, 599, 1141
NlaIV	GGNNCC	1 cut(s)	874
NmuCI	GTSAC	4 cut(s)	285, 598, 1015, 1085
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	2 cut(s)	368, 542
PciI	ACATGT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	4 cut(s)	445, 710, 862, 1141
PkrI	GCNGC	5 cut(s)	523, 537, 562, 565, 666
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	874
PspPI	GGNCC	2 cut(s)	197, 215
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	53, 699, 1164
SatI	GCNGC	5 cut(s)	522, 536, 561, 564, 665
Sau3AI	GATC	6 cut(s)	39, 77, 103, 307, 592, 640
Sau96I	GGNCC	2 cut(s)	197, 215
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	962
SfaNI	GCATC	3 cut(s)	643, 676, 974
SinI	GGWCC	2 cut(s)	197, 215
SmlI	CTYRAG	2 cut(s)	1073, 1108
SmoI	CTYRAG	2 cut(s)	1073, 1108
Sse9I	AATT	8 cut(s)	88, 121, 271, 462, 477, 769, 941, 1145
SsiI	CCGC	5 cut(s)	48, 117, 536, 545, 1040
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	3 cut(s)	290, 806, 1170
StyD4I	CCNGG	1 cut(s)	960
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	4 cut(s)	60, 143, 239, 356
TaiI	ACGT	2 cut(s)	184, 352
TaqI	TCGA	4 cut(s)	639, 788, 844, 929
TasI	AATT	8 cut(s)	88, 121, 271, 462, 477, 769, 941, 1145
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	4 cut(s)	445, 710, 862, 1141
Tru1I	TTAA	3 cut(s)	53, 699, 1164
Tru9I	TTAA	3 cut(s)	53, 699, 1164
TscAI	CASTG	3 cut(s)	139, 388, 745
TseFI	GTSAC	4 cut(s)	285, 598, 1015, 1085
TseI	GCWGC	4 cut(s)	521, 560, 563, 664
Tsp45I	GTSAC	4 cut(s)	285, 598, 1015, 1085
TspDTI	ATGAA	4 cut(s)	17, 101, 286, 934
TspGWI	ACGGA	1 cut(s)	928
TspRI	CASTG	3 cut(s)	139, 388, 745
VpaK11BI	GGWCC	2 cut(s)	197, 215
XapI	RAATTY	3 cut(s)	271, 477, 941
XbaI	TCTAGA	1 cut(s)	805
XceI	RCATGY	2 cut(s)	368, 542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	3 cut(s)	290, 806, 1170
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.