Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000016.1

Orthogroup ID

OG0005091

Physical Location & Seq

Genomic Coordinates Forward (+)

58035 .. 62568

Gene Structure 4534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000016.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atggccgcttcgccgccgtttgcggtggccgctttcctcatcgctttcttcctctccaaaatcgccgccgcacagttcccccaaaactcaaccggaacttccaatctccaccttccaacaccgtaccagtctctctgcgccagtctcattcacccctccggctacccctgctcggagcacaaaattcaaactagggatggctactttttgggtcttcaacgcgtgtcgtcttcgaatgtggatttgagagcacagccgggtcctccagtgttgctccagcatggactcttcatggcaggtgatgcatggtttttaaattctcccgaacaatccctgggcttcatcctcgcagatgaaggctttgatgtatgggtaggaaatgtgcgtggaacgcgttggagtcaggggcacctatctttatcagaagaggataaggaatattgggattggagttggcaggaattggctctctatgacctttccgaaatgattaaccacatatattcgataacaaactccaaagtctttattgttggacattcacagggaacaatcatgtctttagctgctctcacccagccaaatgtagcagaaatggttgaagctgctgctcttctctgtccaatatcatacttggaacatatcagcactcaatttgtaattagaatggttgatgtgcatcttgatcagatgattcttgctatgggcatccatcaactaaactttagaagtgattggggaattaaccttctgaattcaatatgcgatggccatgttgactgcaatgacttgctaacctccataacagggaagaattgttgtttcaataactcacgcgtggacttctatctggattatgaaccccacccatcatctgcaaagaactttcaccatctcttccaaatgattcgcaagggtacattttcaaagtatgactatggcatcttgaaaaatctgatcgagtatggtcagttgaaaccccctgcatttgatcttagtctcatacccaagtcgttaccactgttgatggcttacggaggcaatgatgctctagcagatgtggaagatttccagcacaccctcaaggaattgcagtctactccacagttggtttatcttgagaactatggtcatgtcgacttcattgtcagcacaacagccaaggaagatcttcatgatcaattgattgggttttttaggtcatggggaaaatctacagacgagggagaagaagatgagaaggtttctcacttctcacttcaagatggacttgcgcatgcgctttcggttaagtttcatggttggcaccagcctccaacagtgaaatggaaggttgtcgcaaagcttgctcatgttcttggcccgcagttgttggttcttgtaccttgcatcgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005576 GO:0005615 GO:0016298 GO:0016787 GO:0016788 GO:0044421 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00100 ko04142 ko04979 map00100 map04142 map04979

Pfam Domains

Protein Families

Abhydro_lipase Hydrolase_4

Protein Analysis

465

Amino Acids

51.99

Weight (kDa)

5.51

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15230
fragaria_vesca	FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050
malus_domestica	MD07G1242000.v1.1 MD10G1098600.v1.1
prunus_persica	Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1
pyrus_communis	pycom10g08450
rosa_chinensis	RchiOBHm_Chr6g0254931
rosa_laevigata	RLG00000014877
rosa_multiflora	Rmu_sc0000016.1_g000012 Rmu_sc0005039.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210470
rosa_rugosa	Rorug05G0555300 Rorug05G0555400 Rorug05G0555500
rosa_samantha	Rh6AG072900 Rh6BG065100 Rh6CG064900 Rh6DG061900
rosa_wichuraiana	Rw0G002710 Rw6G006350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
AasI	GACNNNNNNGTC	1 cut(s)	1145
Acc16I	TGCGCA	1 cut(s)	1275
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	408, 1305
AccI	GTMKAC	2 cut(s)	1097, 1137
AccII	CGCG	3 cut(s)	222, 394, 837
AciI	CCGC	7 cut(s)	6, 14, 23, 30, 66, 69, 1364
AcoI	YGGCCR	3 cut(s)	3, 27, 769
AcsI	RAATTY	3 cut(s)	183, 316, 754
AfaI	GTAC	3 cut(s)	125, 919, 1383
AfiI	CCNNNNNNNGG	2 cut(s)	172, 807
AflIII	ACRYGT	3 cut(s)	220, 392, 835
AgsI	TTSAA	9 cut(s)	188, 218, 602, 759, 826, 927, 949, 976, 1262
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	566, 605, 1345
AluI	AGCT	3 cut(s)	566, 605, 1345
Alw21I	GWGCWC	2 cut(s)	180, 253
Alw26I	GTCTC	3 cut(s)	135, 149, 1004
AoxI	GGCC	4 cut(s)	3, 27, 769, 1360
ApeKI	GCWGC	3 cut(s)	566, 605, 608
ApoI	RAATTY	3 cut(s)	183, 316, 754
Asp700I	GAANNNNTTC	1 cut(s)	1170
AspLEI	GCGC	3 cut(s)	140, 1276, 1282
AspS9I	GGNCC	2 cut(s)	260, 1361
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	4 cut(s)	143, 311, 565, 881
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	771
BanI	GGYRCC	2 cut(s)	408, 1305
BbsI	GAAGAC	2 cut(s)	206, 222
Bbv12I	GWGCWC	2 cut(s)	180, 253
BbvI	GCAGC	3 cut(s)	553, 592, 595
BccI	CCATC	7 cut(s)	191, 720, 761, 877, 900, 1021, 1259
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	2 cut(s)	685, 1177
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	135, 149, 1004
BfaI	CTAG	2 cut(s)	192, 1052
BfmI	CTRYAG	1 cut(s)	1215
BfuAI	ACCTGC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	1168
BisI	GCNGC	8 cut(s)	6, 14, 30, 66, 69, 567, 606, 609
BlsI	GCNGC	8 cut(s)	7, 15, 31, 67, 70, 568, 607, 610
Bme1390I	CCNGG	2 cut(s)	258, 335
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	260, 1361
BmiI	GGNNCC	3 cut(s)	261, 410, 1307
BmrFI	CCNGG	2 cut(s)	258, 335
BmsI	GCATC	5 cut(s)	292, 688, 717, 951, 1036
BpiI	GAAGAC	2 cut(s)	206, 222
BpmI	CTGGAG	2 cut(s)	249, 260
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	2 cut(s)	1067, 1139
BpuMI	CCSGG	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	678
BsaJI	CCNNGG	3 cut(s)	333, 334, 1161
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 807
Bse1I	ACTGG	3 cut(s)	127, 141, 266
Bse3DI	GCAATG	2 cut(s)	790, 1048
Bse8I	GATNNNNATC	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	333, 334, 1161
BseGI	GGATG	3 cut(s)	202, 342, 708
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	2 cut(s)	172, 807
BseMI	GCAATG	2 cut(s)	790, 1048
BseNI	ACTGG	3 cut(s)	127, 141, 266
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	553, 592, 595
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	3 cut(s)	222, 394, 837
BshFI	GGCC	4 cut(s)	5, 29, 771, 1362
BshNI	GGYRCC	2 cut(s)	408, 1305
BsiHKAI	GWGCWC	2 cut(s)	180, 253
BsiSI	CCGG	3 cut(s)	93, 159, 257
BslI	CCNNNNNNNGG	2 cut(s)	172, 807
BsmAI	GTCTC	3 cut(s)	135, 149, 1004
BsnI	GGCC	4 cut(s)	5, 29, 771, 1362
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	180, 253, 411
Bsp143I	GATC	5 cut(s)	685, 957, 991, 1168, 1177
BspACI	CCGC	7 cut(s)	6, 14, 23, 30, 66, 69, 1364
BspANI	GGCC	4 cut(s)	5, 29, 771, 1362
BspFNI	CGCG	3 cut(s)	222, 394, 837
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	3 cut(s)	261, 410, 1307
BspMI	ACCTGC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	233
BspT107I	GGYRCC	2 cut(s)	408, 1305
BsrDI	GCAATG	2 cut(s)	790, 1048
BsrI	ACTGG	3 cut(s)	127, 141, 266
BssECI	CCNNGG	3 cut(s)	333, 334, 1161
BssMI	GATC	5 cut(s)	685, 957, 991, 1168, 1177
BssT1I	CCWWGG	1 cut(s)	1161
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	5 cut(s)	75, 123, 1023, 1107, 1321
Bst6I	CTCTTC	4 cut(s)	293, 420, 618, 902
BstAPI	GCANNNNNTGC	2 cut(s)	302, 1346
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	1278, 1347, 1364
BstDEI	CTNAG	1 cut(s)	995
BstF5I	GGATG	3 cut(s)	202, 342, 708
BstFNI	CGCG	3 cut(s)	222, 394, 837
BstHHI	GCGC	3 cut(s)	140, 1276, 1282
BstKTI	GATC	5 cut(s)	688, 960, 994, 1171, 1180
BstMAI	GTCTC	3 cut(s)	135, 149, 1004
BstMBI	GATC	5 cut(s)	685, 957, 991, 1168, 1177
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 168, 302, 391, 1346
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	1280
BstSCI	CCNGG	2 cut(s)	256, 333
BstSFI	CTRYAG	1 cut(s)	1215
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	3 cut(s)	222, 394, 837
BstV1I	GCAGC	3 cut(s)	553, 592, 595
BstV2I	GAAGAC	2 cut(s)	206, 222
BstX2I	RGATCY	1 cut(s)	1168
BstYI	RGATCY	1 cut(s)	1168
BsuRI	GGCC	4 cut(s)	5, 29, 771, 1362
BtgZI	GCGATG	2 cut(s)	25, 780
BtsCI	GGATG	3 cut(s)	202, 342, 708
BtsIMutI	CAGTG	3 cut(s)	273, 1019, 1326
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	3 cut(s)	1278, 1347, 1364
CciI	TCATGA	1 cut(s)	1174
CfoI	GCGC	3 cut(s)	140, 1276, 1282
Cfr13I	GGNCC	2 cut(s)	260, 1361
Csp6I	GTAC	3 cut(s)	124, 918, 1382
CviQI	GTAC	3 cut(s)	124, 918, 1382
DdeI	CTNAG	1 cut(s)	995
DpnI	GATC	5 cut(s)	687, 959, 993, 1170, 1179
DpnII	GATC	5 cut(s)	685, 957, 991, 1168, 1177
DraI	TTTAAA	1 cut(s)	315
DrdI	GACNNNNNNGTC	1 cut(s)	1145
DseDI	GACNNNNNNGTC	1 cut(s)	1145
EaeI	YGGCCR	3 cut(s)	3, 27, 769
Eam1104I	CTCTTC	4 cut(s)	293, 420, 618, 902
EarI	CTCTTC	4 cut(s)	293, 420, 618, 902
Eco130I	CCWWGG	1 cut(s)	1161
Eco47I	GGWCC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	1161
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	1161
FalI	AAGNNNNNCTT	2 cut(s)	1254, 1286
FauI	CCCGC	1 cut(s)	1371
FbaI	TGATCA	2 cut(s)	685, 1177
FblI	GTMKAC	2 cut(s)	1097, 1137
Fnu4HI	GCNGC	8 cut(s)	6, 14, 30, 66, 69, 567, 606, 609
FokI	GGATG	3 cut(s)	209, 329, 695
Fsp4HI	GCNGC	8 cut(s)	6, 14, 30, 66, 69, 567, 606, 609
FspBI	CTAG	2 cut(s)	192, 1052
FspI	TGCGCA	1 cut(s)	1275
GlaI	GCGC	3 cut(s)	139, 1275, 1281
GluI	GCNGC	8 cut(s)	6, 14, 30, 66, 69, 567, 606, 609
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	2 cut(s)	249, 260
HaeIII	GGCC	4 cut(s)	5, 29, 771, 1362
HapII	CCGG	3 cut(s)	93, 159, 257
HhaI	GCGC	3 cut(s)	140, 1276, 1282
Hin6I	GCGC	3 cut(s)	138, 1274, 1280
HinP1I	GCGC	3 cut(s)	138, 1274, 1280
HincII	GTYRAC	2 cut(s)	778, 1138
HindII	GTYRAC	2 cut(s)	778, 1138
HindIII	AAGCTT	1 cut(s)	1343
HinfI	GANTC	4 cut(s)	285, 400, 694, 907
HpaII	CCGG	3 cut(s)	93, 159, 257
HphI	GGTGA	4 cut(s)	143, 311, 565, 881
Hpy166II	GTNNAC	4 cut(s)	778, 841, 1098, 1138
Hpy188I	TCNGA	6 cut(s)	175, 424, 484, 690, 753, 957
Hpy188III	TCNNGA	7 cut(s)	323, 683, 851, 946, 1118, 1175, 1262
Hpy8I	GTNNAC	4 cut(s)	778, 841, 1098, 1138
HpyAV	CCTTC	5 cut(s)	122, 350, 758, 1234, 1324
HpyCH4III	ACNGT	5 cut(s)	75, 123, 1023, 1107, 1321
HpyCH4V	TGCA	7 cut(s)	305, 679, 783, 878, 986, 1093, 1389
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 168, 302, 391, 1346
HpyF3I	CTNAG	1 cut(s)	995
HspAI	GCGC	3 cut(s)	138, 1274, 1280
Ksp22I	TGATCA	2 cut(s)	685, 1177
Kzo9I	GATC	5 cut(s)	685, 957, 991, 1168, 1177
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	2 cut(s)	175, 279
Lsp1109I	GCAGC	3 cut(s)	553, 592, 595
LweI	GCATC	5 cut(s)	292, 688, 717, 951, 1036
MaeI	CTAG	2 cut(s)	192, 1052
MaeIII	GTNAC	1 cut(s)	1014
MalI	GATC	5 cut(s)	687, 959, 993, 1170, 1179
MboI	GATC	5 cut(s)	685, 957, 991, 1168, 1177
MfeI	CAATTG	1 cut(s)	1181
MflI	RGATCY	1 cut(s)	1168
MhlI	GDGCHC	3 cut(s)	180, 253, 411
MlsI	TGGCCA	1 cut(s)	771
MluI	ACGCGT	3 cut(s)	220, 392, 835
MluNI	TGGCCA	1 cut(s)	771
MlyI	GAGTC	2 cut(s)	279, 409
MmeI	TCCRAC	4 cut(s)	140, 377, 514, 1340
Mox20I	TGGCCA	1 cut(s)	771
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	1170
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	4 cut(s)	314, 492, 744, 1290
Msp20I	TGGCCA	1 cut(s)	771
MspI	CCGG	3 cut(s)	93, 159, 257
MspR9I	CCNGG	2 cut(s)	258, 335
MunI	CAATTG	1 cut(s)	1181
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	3 cut(s)	222, 394, 837
MwoI	GCNNNNNNNGC	5 cut(s)	29, 168, 302, 391, 1346
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	5 cut(s)	685, 957, 991, 1168, 1177
NlaIV	GGNNCC	3 cut(s)	261, 410, 1307
NsbI	TGCGCA	1 cut(s)	1275
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	1280
NspV	TTCGAA	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	1280
PagI	TCATGA	1 cut(s)	1174
PaqCI	CACCTGC	1 cut(s)	287
PasI	CCCWGGG	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	1170
PfeI	GAWTC	2 cut(s)	694, 907
PkrI	GCNGC	8 cut(s)	7, 15, 31, 67, 70, 568, 607, 610
PleI	GAGTC	2 cut(s)	279, 408
PpsI	GAGTC	2 cut(s)	279, 408
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	261, 410, 1307
PspPI	GGNCC	2 cut(s)	260, 1361
PspPPI	RGGWCCY	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	1168
RsaI	GTAC	3 cut(s)	125, 919, 1383
RsaNI	GTAC	3 cut(s)	124, 918, 1382
SalI	GTCGAC	1 cut(s)	1136
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	4 cut(s)	314, 492, 744, 1290
SatI	GCNGC	8 cut(s)	6, 14, 30, 66, 69, 567, 606, 609
Sau3AI	GATC	5 cut(s)	685, 957, 991, 1168, 1177
Sau96I	GGNCC	2 cut(s)	260, 1361
SchI	GAGTC	2 cut(s)	279, 409
ScrFI	CCNGG	2 cut(s)	258, 335
SduI	GDGCHC	3 cut(s)	180, 253, 411
SfaNI	GCATC	5 cut(s)	292, 688, 717, 951, 1036
SfcI	CTRYAG	1 cut(s)	1215
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	1082, 1118
SmoI	CTYRAG	2 cut(s)	1082, 1118
SphI	GCATGC	1 cut(s)	1280
SsiI	CCGC	7 cut(s)	6, 14, 23, 30, 66, 69, 1364
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	2 cut(s)	192, 1052
StyD4I	CCNGG	2 cut(s)	256, 333
StyI	CCWWGG	1 cut(s)	1161
TaaI	ACNGT	5 cut(s)	75, 123, 1023, 1107, 1321
TaqI	TCGA	4 cut(s)	233, 506, 960, 1137
TauI	GCSGC	5 cut(s)	8, 16, 32, 68, 71
TfiI	GAWTC	2 cut(s)	694, 907
Tru1I	TTAA	4 cut(s)	314, 492, 744, 1290
Tru9I	TTAA	4 cut(s)	314, 492, 744, 1290
TscAI	CASTG	3 cut(s)	273, 1026, 1326
TseI	GCWGC	3 cut(s)	566, 605, 608
TspDTI	ATGAA	7 cut(s)	280, 331, 369, 873, 1132, 1163, 1286
TspGWI	ACGGA	1 cut(s)	1050
TspRI	CASTG	3 cut(s)	273, 1026, 1326
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	183, 316, 754
XceI	RCATGY	1 cut(s)	1280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1323
XmiI	GTMKAC	2 cut(s)	1097, 1137
XmnI	GAANNNNTTC	1 cut(s)	1170
XspI	CTAG	2 cut(s)	192, 1052
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.