Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005091

Physical Location & Seq

Genomic Coordinates Forward (+)

6318016 .. 6322462

Gene Structure 4447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG061900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATGGTCGCTTCGCCGCCGTTCGCGGTGGCTGCTTTCCTCATCGCCTTCTTCCTCTCCAAAATCGCCGCCGCACAGTTCCCCCAAAACTCAACCGGAATCTACAATCTCCACCTTCCAACACCGTACCAGTCTCTCTGCGCCGGTCTCATTCACCCCTCCGGTTACCCTTGCTCGGAGCACAAAATTCAAACTAGGGATGGCTACTTTTTGGGTCTTCAACGCGTGTCGTCTTCGAATGTGGATTTGAGAGCACAGCCGGGTCCTCCAGTGCTGCTTCAGCATGGACTCTTCATGGCAGGTGATGCATGGTTTTTAAATTCTCCCGAACAATCACTGGGCTTCATCCTCGCAGATGAAGGCTTTGATGTATGGGTAGGAAACGTGCGTGGAACACGTTGGAGTCAGGGGCACATATCTTTATCAGAAGAGGATAAGGAATATTGGGATTGGAGTTGGCAGGAATTGGCTCTCTATGATCTTTCTGAAATGATTAACCACATATATTCGATAACAAACTCCAAAGTCTTTATTGTTGGACATTCACAGGGAACAATCATGTCTTTAGCTGCTCTCACCCAGCCAGATGTAGCAGAAATGGTTGAAGCTGCTGCTCTTCTCTGTCCAATATCATACTTGGAACATATCAGCACTCAATTTGTAATTAGAATGGTTGATGTGCATCTTGATCAGATGATTCTTGCTATGGGCATCCATCAACTAAACTTTAGAAGAGATTGGGGAATTAACCTTCTGAATTCAATATGCGATGGCCATGTTGACTGCAATGACTTGCTAACCTCCATAACAGGGAAGAATTGTTGCTTCAATAACTCACGCGTGGACTTCTATCTGGATTATGAACCCCACCCATCATCCGCAAAGAACTTTCACCATCTCTTCCAAAGTATGCTCTATACTGTTCATATTAGCAAGAATACCAGCTGTTTAGACCATCCTTTTTCTACACTGATTATTGTATTTTGGGTTTGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005576 GO:0005615 GO:0016298 GO:0016787 GO:0016788 GO:0044421 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00100 ko04142 ko04979 map00100 map04142 map04979

Pfam Domains

Protein Families

Abhydro_lipase Hydrolase_4

Protein Analysis

332

Amino Acids

37.42

Weight (kDa)

5.46

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	50 - 107	4.7e-18	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	89 - 212	6.2e-11	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15230
fragaria_vesca	FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050
malus_domestica	MD07G1242000.v1.1 MD10G1098600.v1.1
prunus_persica	Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1
pyrus_communis	pycom10g08450
rosa_chinensis	RchiOBHm_Chr6g0254931
rosa_laevigata	RLG00000014877
rosa_multiflora	Rmu_sc0000016.1_g000012 Rmu_sc0005039.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210470
rosa_rugosa	Rorug05G0555300 Rorug05G0555400 Rorug05G0555500
rosa_samantha	Rh6AG072900 Rh6BG065100 Rh6CG064900 Rh6DG061900
rosa_wichuraiana	Rw0G002710 Rw6G006350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	290
AccII	CGCG	3 cut(s)	26, 225, 840
AciI	CCGC	5 cut(s)	17, 26, 69, 72, 879
AcoI	YGGCCR	1 cut(s)	772
AcsI	RAATTY	3 cut(s)	186, 319, 757
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	175, 810
AflIII	ACRYGT	3 cut(s)	223, 395, 838
AgsI	TTSAA	5 cut(s)	191, 221, 605, 762, 829
AluBI	AGCT	3 cut(s)	569, 608, 945
AluI	AGCT	3 cut(s)	569, 608, 945
Alw21I	GWGCWC	2 cut(s)	183, 256
Alw26I	GTCTC	2 cut(s)	138, 152
AoxI	GGCC	1 cut(s)	772
ApeKI	GCWGC	5 cut(s)	32, 274, 569, 608, 611
ApoI	RAATTY	3 cut(s)	186, 319, 757
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	4 cut(s)	146, 314, 568, 884
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	774
BbsI	GAAGAC	2 cut(s)	209, 225
Bbv12I	GWGCWC	2 cut(s)	183, 256
BbvI	GCAGC	5 cut(s)	19, 261, 556, 595, 598
BccI	CCATC	6 cut(s)	194, 723, 764, 880, 903, 963
BceAI	ACGGC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	138, 152
BfaI	CTAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	8 cut(s)	17, 33, 69, 72, 275, 570, 609, 612
BlsI	GCNGC	8 cut(s)	18, 34, 70, 73, 276, 571, 610, 613
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	3 cut(s)	295, 691, 720
BmuI	ACTGGG	1 cut(s)	347
BpiI	GAAGAC	2 cut(s)	209, 225
BpmI	CTGGAG	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	152
BsaWI	WCCGGW	2 cut(s)	95, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 810
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	130, 269, 342
Bse3DI	GCAATG	1 cut(s)	793
Bse8I	GATNNNNATC	1 cut(s)	681
BseGI	GGATG	5 cut(s)	205, 345, 711, 875, 955
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	175, 810
BseMI	GCAATG	1 cut(s)	793
BseNI	ACTGG	3 cut(s)	130, 269, 342
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	5 cut(s)	19, 261, 556, 595, 598
BseYI	CCCAGC	1 cut(s)	579
Bsh1236I	CGCG	3 cut(s)	26, 225, 840
BshFI	GGCC	1 cut(s)	774
BsiHKAI	GWGCWC	2 cut(s)	183, 256
BsiSI	CCGG	4 cut(s)	96, 144, 162, 260
BslI	CCNNNNNNNGG	2 cut(s)	175, 810
BsmAI	GTCTC	2 cut(s)	138, 152
BsnI	GGCC	1 cut(s)	774
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	3 cut(s)	183, 256, 414
Bsp143I	GATC	2 cut(s)	478, 688
BspACI	CCGC	5 cut(s)	17, 26, 69, 72, 879
BspANI	GGCC	1 cut(s)	774
BspFNI	CGCG	3 cut(s)	26, 225, 840
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	793
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	130, 269, 342
BssAI	RCCGGY	1 cut(s)	143
BssMI	GATC	2 cut(s)	478, 688
Bst4CI	ACNGT	3 cut(s)	78, 126, 922
Bst6I	CTCTTC	5 cut(s)	296, 423, 621, 727, 905
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	164
BstF5I	GGATG	5 cut(s)	205, 345, 711, 875, 955
BstFNI	CGCG	3 cut(s)	26, 225, 840
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	481, 691
BstMAI	GTCTC	2 cut(s)	138, 152
BstMBI	GATC	2 cut(s)	478, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 280, 305
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	3 cut(s)	26, 225, 840
BstV1I	GCAGC	5 cut(s)	19, 261, 556, 595, 598
BstV2I	GAAGAC	2 cut(s)	209, 225
BsuRI	GGCC	1 cut(s)	774
BtgZI	GCGATG	2 cut(s)	28, 783
BtsCI	GGATG	5 cut(s)	205, 345, 711, 875, 955
BtsIMutI	CAGTG	3 cut(s)	276, 335, 968
BveI	ACCTGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	5 cut(s)	284, 295, 309, 559, 776
CviQI	GTAC	1 cut(s)	127
DpnI	GATC	2 cut(s)	480, 690
DpnII	GATC	2 cut(s)	478, 688
DraI	TTTAAA	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	772
Eam1104I	CTCTTC	5 cut(s)	296, 423, 621, 727, 905
EarI	CTCTTC	5 cut(s)	296, 423, 621, 727, 905
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	757
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	5 cut(s)	287, 298, 312, 562, 779
FatI	CATG	5 cut(s)	283, 294, 308, 558, 775
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	8 cut(s)	17, 33, 69, 72, 275, 570, 609, 612
FokI	GGATG	5 cut(s)	212, 332, 698, 862, 942
Fsp4HI	GCNGC	8 cut(s)	17, 33, 69, 72, 275, 570, 609, 612
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	8 cut(s)	17, 33, 69, 72, 275, 570, 609, 612
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	774
HapII	CCGG	4 cut(s)	96, 144, 162, 260
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	287, 298, 312, 562, 779
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	4 cut(s)	99, 288, 403, 697
HpaII	CCGG	4 cut(s)	96, 144, 162, 260
HphI	GGTGA	4 cut(s)	146, 314, 568, 884
Hpy166II	GTNNAC	2 cut(s)	781, 844
Hpy188I	TCNGA	5 cut(s)	178, 427, 487, 693, 756
Hpy188III	TCNNGA	3 cut(s)	326, 686, 854
Hpy8I	GTNNAC	2 cut(s)	781, 844
HpyAV	CCTTC	4 cut(s)	58, 125, 353, 761
HpyCH4III	ACNGT	3 cut(s)	78, 126, 922
HpyCH4IV	ACGT	2 cut(s)	384, 397
HpyCH4V	TGCA	3 cut(s)	308, 682, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 280, 305
HpySE526I	ACGT	2 cut(s)	384, 397
Hsp92II	CATG	5 cut(s)	287, 298, 312, 562, 779
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	2 cut(s)	478, 688
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	5 cut(s)	19, 261, 556, 595, 598
LweI	GCATC	3 cut(s)	295, 691, 720
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	2 cut(s)	384, 397
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	480, 690
MboI	GATC	2 cut(s)	478, 688
MboII	GAAGA	9 cut(s)	43, 209, 225, 283, 440, 608, 744, 826, 892
MhlI	GDGCHC	3 cut(s)	183, 256, 414
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	8 cut(s)	186, 319, 464, 656, 663, 744, 757, 817
MluI	ACGCGT	2 cut(s)	223, 838
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	2 cut(s)	282, 412
MmeI	TCCRAC	3 cut(s)	143, 380, 517
MnlI	CCTC	7 cut(s)	50, 65, 169, 276, 359, 424, 811
Mox20I	TGGCCA	1 cut(s)	774
Mph1103I	ATGCAT	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	3 cut(s)	317, 495, 747
Msp20I	TGGCCA	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	945
MspI	CCGG	4 cut(s)	96, 144, 162, 260
MspR9I	CCNGG	1 cut(s)	261
MvnI	CGCG	3 cut(s)	26, 225, 840
MwoI	GCNNNNNNNGC	3 cut(s)	32, 280, 305
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	478, 688
NlaIII	CATG	5 cut(s)	287, 298, 312, 562, 779
NlaIV	GGNNCC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	621
PfeI	GAWTC	2 cut(s)	99, 697
PkrI	GCNGC	8 cut(s)	18, 34, 70, 73, 276, 571, 610, 613
PleI	GAGTC	2 cut(s)	282, 411
PpsI	GAGTC	2 cut(s)	282, 411
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	945
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	317, 495, 747
SatI	GCNGC	8 cut(s)	17, 33, 69, 72, 275, 570, 609, 612
Sau3AI	GATC	2 cut(s)	478, 688
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	282, 412
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	3 cut(s)	183, 256, 414
SetI	ASST	9 cut(s)	117, 304, 387, 400, 571, 610, 753, 803, 947
SfaNI	GCATC	3 cut(s)	295, 691, 720
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	8 cut(s)	186, 319, 464, 656, 663, 744, 757, 817
SsiI	CCGC	5 cut(s)	17, 26, 69, 72, 879
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	78, 126, 922
TaiI	ACGT	2 cut(s)	387, 400
TaqI	TCGA	2 cut(s)	236, 509
TasI	AATT	8 cut(s)	186, 319, 464, 656, 663, 744, 757, 817
TauI	GCSGC	3 cut(s)	19, 71, 74
TfiI	GAWTC	2 cut(s)	99, 697
Tru1I	TTAA	3 cut(s)	317, 495, 747
Tru9I	TTAA	3 cut(s)	317, 495, 747
TscAI	CASTG	3 cut(s)	276, 342, 975
TseI	GCWGC	5 cut(s)	32, 274, 569, 608, 611
TspDTI	ATGAA	5 cut(s)	283, 334, 372, 876, 914
TspRI	CASTG	3 cut(s)	276, 342, 975
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	3 cut(s)	186, 319, 757
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.