Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005091

Physical Location & Seq

Genomic Coordinates Forward (+)

10299479 .. 10304151

Gene Structure 4673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGATGGCCGCTTCGCCGCCGTTCGCGGTGGCCGCTTTCCTCATCGCTTTCTTCCTCTCCAAAATCGCCGCCGCCGCACAGTTCCCCCAAAACTCAACCGGAACTTCCAATCTCCACCTTCCAACACCGTACCAGTCTCTCTGCGCCAGTCTCATTCACCCCTCCGGTTACCCTTGCTCGGAGCACAAAATTCAAACTAGGGATGGCTACTTTTTGGGTCTTCAACGCGTGTCGTCTTCGAATGTGGATTTGAGAGCACAGCCGGGTCCTCCAGTGTTGCTCCAGCATGGACTCTTCATGGCAGGTGATGCATGGTTTTTAAATTCTCCCGAACAATCCCTGGGCTTCATCCTCGCAGATGAAGGCTTTGATGTATGGGTAGGAAATGTGCGTGGAACGCGTTGGAGTCAGGGGCACATATCTTTATCAGAAGAGGATAAGGAATATTGGGATTGGAGTTGGCAGGAATTGGCTCTCTATGATCTTTCCGAAATGATTAACCACATATATTCGATAACAAACTCCAAAGTCTTTATTGTTGGACATTCACAGGGAACAATCATGTCTTTAGCTGCTCTCACCCAGCCAGATGTAGCAGAAATGGTTGAAGCTGCTGCTCTTCTCTGTCCAATATCATACTTGGAACATATCAGCACTCAATTTGTAATTAGAATGGTTGATGTGCATCTTGATCAGATGATTCTTGCTATGGGCATCCATCAACTAAACTTTAGAAGTGATTGGGGAATTAACCTTCTGACTTCAATATGCGATGGCCATGTTGACTGCAATGACTTGCTAACCTCCATAACAGGTTCTACTTCATTCAGATACTACTTCTCTTCTCTGCCTCCCTTCATCTCTCCCTCATTGTGTGTGGGCATGAATATGTTGATATTCCAAACATCTATGGCATGTATTGGGCACTTGGCTTGTTGCCATTTAAAATGTTTGACAGGAAACACTCTCTGCTTTTTTTTTTTTGTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005576 GO:0005615 GO:0016298 GO:0016787 GO:0016788 GO:0044421 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00100 ko04142 ko04979 map00100 map04142 map04979

Pfam Domains

Protein Families

Abhydro_lipase Hydrolase_4

Protein Analysis

330

Amino Acids

36.47

Weight (kDa)

5.29

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	50 - 108	3e-18	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	90 - 213	6.1e-11	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15230
fragaria_vesca	FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050
malus_domestica	MD07G1242000.v1.1 MD10G1098600.v1.1
prunus_persica	Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1
pyrus_communis	pycom10g08450
rosa_chinensis	RchiOBHm_Chr6g0254931
rosa_laevigata	RLG00000014877
rosa_multiflora	Rmu_sc0000016.1_g000012 Rmu_sc0005039.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210470
rosa_rugosa	Rorug05G0555300 Rorug05G0555400 Rorug05G0555500
rosa_samantha	Rh6AG072900 Rh6BG065100 Rh6CG064900 Rh6DG061900
rosa_wichuraiana	Rw0G002710 Rw6G006350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	293
AccII	CGCG	3 cut(s)	26, 228, 400
AciI	CCGC	7 cut(s)	9, 17, 26, 33, 69, 72, 75
AcoI	YGGCCR	3 cut(s)	6, 30, 775
AcsI	RAATTY	2 cut(s)	189, 322
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	2 cut(s)	226, 398
AgsI	TTSAA	4 cut(s)	194, 224, 608, 765
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	2 cut(s)	572, 611
AluI	AGCT	2 cut(s)	572, 611
Alw21I	GWGCWC	2 cut(s)	186, 259
Alw26I	GTCTC	2 cut(s)	141, 155
AoxI	GGCC	3 cut(s)	6, 30, 775
ApeKI	GCWGC	3 cut(s)	572, 611, 614
ApoI	RAATTY	2 cut(s)	189, 322
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	149, 317, 571
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	2 cut(s)	417, 927
BalI	TGGCCA	1 cut(s)	777
BbsI	GAAGAC	2 cut(s)	212, 228
Bbv12I	GWGCWC	2 cut(s)	186, 259
BbvI	GCAGC	3 cut(s)	559, 598, 601
BccI	CCATC	3 cut(s)	197, 726, 767
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	691
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	141, 155
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 75, 573, 612, 615
BlsI	GCNGC	9 cut(s)	10, 18, 34, 70, 73, 76, 574, 613, 616
Bme1390I	CCNGG	2 cut(s)	264, 341
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	264, 341
BmsI	GCATC	3 cut(s)	298, 694, 723
BpiI	GAAGAC	2 cut(s)	212, 228
BpmI	CTGGAG	2 cut(s)	255, 266
Bpu14I	TTCGAA	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	339, 340
BsaWI	WCCGGW	2 cut(s)	98, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	3 cut(s)	133, 147, 272
Bse3DI	GCAATG	1 cut(s)	796
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	339, 340
BseGI	GGATG	3 cut(s)	208, 348, 714
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	796
BseNI	ACTGG	3 cut(s)	133, 147, 272
BseSI	GKGCMC	2 cut(s)	417, 927
BseXI	GCAGC	3 cut(s)	559, 598, 601
BseYI	CCCAGC	1 cut(s)	582
Bsh1236I	CGCG	3 cut(s)	26, 228, 400
BshFI	GGCC	3 cut(s)	8, 32, 777
BsiHKAI	GWGCWC	2 cut(s)	186, 259
BsiSI	CCGG	3 cut(s)	99, 165, 263
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	141, 155
BsnI	GGCC	3 cut(s)	8, 32, 777
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	186, 259, 417, 927
Bsp143I	GATC	2 cut(s)	481, 691
BspACI	CCGC	7 cut(s)	9, 17, 26, 33, 69, 72, 75
BspANI	GGCC	3 cut(s)	8, 32, 777
BspFNI	CGCG	3 cut(s)	26, 228, 400
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	796
BsrI	ACTGG	3 cut(s)	133, 147, 272
BssECI	CCNNGG	2 cut(s)	339, 340
BssMI	GATC	2 cut(s)	481, 691
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	81, 129
Bst6I	CTCTTC	4 cut(s)	299, 426, 624, 847
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	239
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	208, 348, 714
BstFNI	CGCG	3 cut(s)	26, 228, 400
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	484, 694
BstMAI	GTCTC	2 cut(s)	141, 155
BstMBI	GATC	2 cut(s)	481, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 74, 308, 397
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	918
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	262, 339
BstSLI	GKGCMC	2 cut(s)	417, 927
BstUI	CGCG	3 cut(s)	26, 228, 400
BstV1I	GCAGC	3 cut(s)	559, 598, 601
BstV2I	GAAGAC	2 cut(s)	212, 228
BsuRI	GGCC	3 cut(s)	8, 32, 777
BtgZI	GCGATG	2 cut(s)	28, 786
BtsCI	GGATG	3 cut(s)	208, 348, 714
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	7 cut(s)	287, 298, 312, 562, 779, 883, 915
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	2 cut(s)	483, 693
DpnII	GATC	2 cut(s)	481, 691
DraI	TTTAAA	2 cut(s)	321, 945
EaeI	YGGCCR	3 cut(s)	6, 30, 775
Eam1104I	CTCTTC	4 cut(s)	299, 426, 624, 847
EarI	CTCTTC	4 cut(s)	299, 426, 624, 847
Eco47I	GGWCC	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	313
FaeI	CATG	7 cut(s)	290, 301, 315, 565, 782, 886, 918
FatI	CATG	7 cut(s)	286, 297, 311, 561, 778, 882, 914
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 75, 573, 612, 615
FokI	GGATG	3 cut(s)	215, 335, 701
Fsp4HI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 75, 573, 612, 615
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 75, 573, 612, 615
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	2 cut(s)	255, 266
HaeIII	GGCC	3 cut(s)	8, 32, 777
HapII	CCGG	3 cut(s)	99, 165, 263
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	7 cut(s)	290, 301, 315, 565, 782, 886, 918
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HinfI	GANTC	3 cut(s)	291, 406, 700
HpaII	CCGG	3 cut(s)	99, 165, 263
HphI	GGTGA	3 cut(s)	149, 317, 571
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	6 cut(s)	181, 430, 490, 696, 759, 830
Hpy188III	TCNNGA	2 cut(s)	329, 689
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	4 cut(s)	128, 356, 764, 865
HpyCH4III	ACNGT	2 cut(s)	81, 129
HpyCH4V	TGCA	3 cut(s)	311, 685, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 74, 308, 397
Hsp92II	CATG	7 cut(s)	290, 301, 315, 565, 782, 886, 918
HspAI	GCGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	2 cut(s)	481, 691
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	2 cut(s)	181, 285
Lsp1109I	GCAGC	3 cut(s)	559, 598, 601
LweI	GCATC	3 cut(s)	298, 694, 723
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	483, 693
MboI	GATC	2 cut(s)	481, 691
MboII	GAAGA	7 cut(s)	43, 212, 228, 286, 443, 611, 834
MhlI	GDGCHC	4 cut(s)	186, 259, 417, 927
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	6 cut(s)	189, 322, 467, 659, 666, 747
MluI	ACGCGT	2 cut(s)	226, 398
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	2 cut(s)	285, 415
MmeI	TCCRAC	3 cut(s)	146, 383, 520
MnlI	CCTC	9 cut(s)	50, 65, 172, 279, 362, 427, 814, 861, 877
Mox20I	TGGCCA	1 cut(s)	777
Mph1103I	ATGCAT	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	4 cut(s)	320, 498, 750, 944
MslI	CAYNNNNRTG	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	777
MspI	CCGG	3 cut(s)	99, 165, 263
MspR9I	CCNGG	2 cut(s)	264, 341
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	3 cut(s)	26, 228, 400
MwoI	GCNNNNNNNGC	4 cut(s)	32, 74, 308, 397
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	481, 691
NlaIII	CATG	7 cut(s)	290, 301, 315, 565, 782, 886, 918
NlaIV	GGNNCC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	918
NspV	TTCGAA	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	293
PasI	CCCWGGG	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	700
PkrI	GCNGC	9 cut(s)	10, 18, 34, 70, 73, 76, 574, 613, 616
PleI	GAGTC	2 cut(s)	285, 414
PpsI	GAGTC	2 cut(s)	285, 414
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	339
PspEI	GGTNACC	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	887
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	320, 498, 750, 944
SatI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 75, 573, 612, 615
Sau3AI	GATC	2 cut(s)	481, 691
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	285, 415
ScrFI	CCNGG	2 cut(s)	264, 341
SduI	GDGCHC	4 cut(s)	186, 259, 417, 927
SetI	ASST	7 cut(s)	120, 307, 574, 613, 756, 806, 817
SfaNI	GCATC	3 cut(s)	298, 694, 723
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	887
Sse9I	AATT	6 cut(s)	189, 322, 467, 659, 666, 747
SsiI	CCGC	7 cut(s)	9, 17, 26, 33, 69, 72, 75
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	262, 339
TaaI	ACNGT	2 cut(s)	81, 129
TaqI	TCGA	2 cut(s)	239, 512
TasI	AATT	6 cut(s)	189, 322, 467, 659, 666, 747
TauI	GCSGC	6 cut(s)	11, 19, 35, 71, 74, 77
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	4 cut(s)	320, 498, 750, 944
Tru9I	TTAA	4 cut(s)	320, 498, 750, 944
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	3 cut(s)	572, 611, 614
TspDTI	ATGAA	6 cut(s)	286, 337, 375, 813, 847, 899
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	189, 322
XceI	RCATGY	1 cut(s)	918
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.