Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005091

Physical Location & Seq

Genomic Coordinates Forward (+)

10049388 .. 10057040

Gene Structure 7653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGATGGCCGCTTCGCCGCCGTTCGCGGTGGCCGCTTTCCTCGTCGCTTTCTTCCTCTCCAAAATCGCCGCCGCACAGTTCCCCCAAAACTCAACCGGAACTTCCAATCTCCACCTTCCAACACCGTACCAGTCTCTCTGCGCCAGTCTCATTCACCCCTCCGGTTACCCCTGCTCGGAGCACAAAATTCAAACTAGGGATGGGTACTTTTTGGGTCTTCAACGCGTGTCGTCTTCGAATGTGGATTTGAGAGCACAGCCGGGTCCTCCAGTGTTGCTCCAGCATGGACTCTTCATGGCAGGTGATGCATGGTTTTTAAATTCTCCCGAACAATCCCTGGGCTTCATCCTCGCAGATGAAGGCTTTGATGTATGGGTAGGAAATGTGCGTGGAACGCGTTGGAGTCAGGGGCACATATCTTTATCAGAAGAGGATAAGGAATATTGGGATTGGAGTTGGCAGGAATTGGCTCTCTATGATCTTTCCGAAATGATTAACCACATATATTCGATAACAAACTCCAAAGTCTTTATTGTTGGACATTCACAGGGAACAATCATGTCTTTAGCTGCTCTCACCCAGCCAGATGTAGCAGAAATGGTTGAAGCTGCTGCTCTTCTCTGTCCAATATCATACTTGGAACATATCAGCACTCAATTTGTAATTAGAATGGTTGATGTGCATCTTGATCAGATGATTCTTGCTATGGGCATCCATCAACTAAACTTTAGAAGTGATTGGGGAATTAACCTTCTGAATTCAATATGCGATGGCCATGTTGACTGCAATGACTTGCTAACCTCCATAACAGGTTCTACTTCATACAGATACAACTTCTCTTCTCTGCCTCCCTTCATCTCTTCCTCATTGTGTGTGGGCATGAATATGTTGATATTCCAAACATCTATGGCATATATTGGGCACTTGGCTTGTTGCCATTTAAAATGTTTGACAGGAAACCCTCTCTGCTTTTTTTTTTTGGGTAAATTTTCTGATAGTGTTTATGTGACTGGGCTGCATATATGGCTTGGAGTAAGCACAATTAGCCACTTTCCTAATAGATTTTCCTTTGATTGTGGTTCTTTCAGTCATTTTAGCATGAATGCTGTAGACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005576 GO:0005615 GO:0016298 GO:0016787 GO:0016788 GO:0044421 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00100 ko04142 ko04979 map00100 map04142 map04979

Pfam Domains

Protein Families

Abhydro_lipase Hydrolase_4

Protein Analysis

372

Amino Acids

41.21

Weight (kDa)

5.45

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	49 - 107	3.6e-18	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	89 - 212	8.1e-11	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15230
fragaria_vesca	FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050
malus_domestica	MD07G1242000.v1.1 MD10G1098600.v1.1
prunus_persica	Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1
pyrus_communis	pycom10g08450
rosa_chinensis	RchiOBHm_Chr6g0254931
rosa_laevigata	RLG00000014877
rosa_multiflora	Rmu_sc0000016.1_g000012 Rmu_sc0005039.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210470
rosa_rugosa	Rorug05G0555300 Rorug05G0555400 Rorug05G0555500
rosa_samantha	Rh6AG072900 Rh6BG065100 Rh6CG064900 Rh6DG061900
rosa_wichuraiana	Rw0G002710 Rw6G006350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	1110
AccII	CGCG	3 cut(s)	26, 225, 397
AciI	CCGC	6 cut(s)	9, 17, 26, 33, 69, 72
AcoI	YGGCCR	3 cut(s)	6, 30, 772
AcsI	RAATTY	4 cut(s)	186, 319, 757, 986
AfaI	GTAC	2 cut(s)	128, 206
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	2 cut(s)	223, 395
AgsI	TTSAA	4 cut(s)	191, 221, 605, 762
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	2 cut(s)	569, 608
AluI	AGCT	2 cut(s)	569, 608
Alw21I	GWGCWC	2 cut(s)	183, 256
Alw26I	GTCTC	2 cut(s)	138, 152
AoxI	GGCC	3 cut(s)	6, 30, 772
ApeKI	GCWGC	4 cut(s)	569, 608, 611, 1015
ApoI	RAATTY	4 cut(s)	186, 319, 757, 986
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	146, 314, 568
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	2 cut(s)	414, 924
BalI	TGGCCA	1 cut(s)	774
BbsI	GAAGAC	2 cut(s)	209, 225
Bbv12I	GWGCWC	2 cut(s)	183, 256
BbvI	GCAGC	4 cut(s)	556, 595, 598, 1002
BccI	CCATC	3 cut(s)	194, 723, 764
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	138, 152
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	2 cut(s)	1107, 1115
BfuAI	ACCTGC	1 cut(s)	290
BisI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 570, 609, 612, 1016
BlsI	GCNGC	9 cut(s)	10, 18, 34, 70, 73, 571, 610, 613, 1017
Bme1390I	CCNGG	2 cut(s)	261, 338
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	2 cut(s)	261, 338
BmrI	ACTGGG	1 cut(s)	1020
BmsI	GCATC	3 cut(s)	295, 691, 720
BmuI	ACTGGG	1 cut(s)	1020
BpiI	GAAGAC	2 cut(s)	209, 225
BpmI	CTGGAG	2 cut(s)	252, 263
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	336, 337
BsaWI	WCCGGW	2 cut(s)	95, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	4 cut(s)	130, 144, 269, 1015
Bse3DI	GCAATG	1 cut(s)	793
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	336, 337
BseGI	GGATG	3 cut(s)	205, 345, 711
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	793
BseNI	ACTGG	4 cut(s)	130, 144, 269, 1015
BseSI	GKGCMC	2 cut(s)	414, 924
BseXI	GCAGC	4 cut(s)	556, 595, 598, 1002
BseYI	CCCAGC	1 cut(s)	579
Bsh1236I	CGCG	3 cut(s)	26, 225, 397
BshFI	GGCC	3 cut(s)	8, 32, 774
BsiHKAI	GWGCWC	2 cut(s)	183, 256
BsiSI	CCGG	3 cut(s)	96, 162, 260
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	138, 152
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	3 cut(s)	8, 32, 774
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	4 cut(s)	183, 256, 414, 924
Bsp143I	GATC	2 cut(s)	478, 688
BspACI	CCGC	6 cut(s)	9, 17, 26, 33, 69, 72
BspANI	GGCC	3 cut(s)	8, 32, 774
BspFNI	CGCG	3 cut(s)	26, 225, 397
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	4 cut(s)	130, 144, 269, 1015
BssECI	CCNNGG	2 cut(s)	336, 337
BssMI	GATC	2 cut(s)	478, 688
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	78, 126
Bst6I	CTCTTC	5 cut(s)	296, 423, 621, 844, 865
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstBI	TTCGAA	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	205, 345, 711
BstFNI	CGCG	3 cut(s)	26, 225, 397
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	481, 691
BstMAI	GTCTC	2 cut(s)	138, 152
BstMBI	GATC	2 cut(s)	478, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 305, 394, 1024, 1044
BstNI	CCWGG	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	259, 336
BstSFI	CTRYAG	2 cut(s)	1107, 1115
BstSLI	GKGCMC	2 cut(s)	414, 924
BstUI	CGCG	3 cut(s)	26, 225, 397
BstV1I	GCAGC	4 cut(s)	556, 595, 598, 1002
BstV2I	GAAGAC	2 cut(s)	209, 225
BsuRI	GGCC	3 cut(s)	8, 32, 774
BtgZI	GCGATG	1 cut(s)	783
BtsCI	GGATG	3 cut(s)	205, 345, 711
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	127, 205
CviAII	CATG	7 cut(s)	284, 295, 309, 559, 776, 880, 1099
CviQI	GTAC	2 cut(s)	127, 205
DpnI	GATC	2 cut(s)	480, 690
DpnII	GATC	2 cut(s)	478, 688
DraI	TTTAAA	2 cut(s)	318, 942
EaeI	YGGCCR	3 cut(s)	6, 30, 772
Eam1104I	CTCTTC	5 cut(s)	296, 423, 621, 844, 865
EarI	CTCTTC	5 cut(s)	296, 423, 621, 844, 865
Eco47I	GGWCC	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	7 cut(s)	287, 298, 312, 562, 779, 883, 1102
FatI	CATG	7 cut(s)	283, 294, 308, 558, 775, 879, 1098
FbaI	TGATCA	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	1110
Fnu4HI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 570, 609, 612, 1016
FokI	GGATG	3 cut(s)	212, 332, 698
Fsp4HI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 570, 609, 612, 1016
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 570, 609, 612, 1016
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	2 cut(s)	252, 263
HaeIII	GGCC	3 cut(s)	8, 32, 774
HapII	CCGG	3 cut(s)	96, 162, 260
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	7 cut(s)	287, 298, 312, 562, 779, 883, 1102
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	3 cut(s)	288, 403, 697
HpaII	CCGG	3 cut(s)	96, 162, 260
HphI	GGTGA	3 cut(s)	146, 314, 568
Hpy166II	GTNNAC	2 cut(s)	781, 1111
Hpy188I	TCNGA	6 cut(s)	178, 427, 487, 693, 756, 994
Hpy188III	TCNNGA	2 cut(s)	326, 686
Hpy8I	GTNNAC	2 cut(s)	781, 1111
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	4 cut(s)	125, 353, 761, 862
HpyCH4III	ACNGT	2 cut(s)	78, 126
HpyCH4V	TGCA	4 cut(s)	308, 682, 786, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 305, 394, 1024, 1044
Hsp92II	CATG	7 cut(s)	287, 298, 312, 562, 779, 883, 1102
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	2 cut(s)	478, 688
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	178, 282
Lsp1109I	GCAGC	4 cut(s)	556, 595, 598, 1002
LweI	GCATC	3 cut(s)	295, 691, 720
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	164, 1006
MalI	GATC	2 cut(s)	480, 690
MboI	GATC	2 cut(s)	478, 688
MboII	GAAGA	8 cut(s)	43, 209, 225, 283, 440, 608, 831, 852
MhlI	GDGCHC	4 cut(s)	183, 256, 414, 924
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	9 cut(s)	186, 319, 464, 656, 663, 744, 757, 986, 1041
MluI	ACGCGT	2 cut(s)	223, 395
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	2 cut(s)	282, 412
MmeI	TCCRAC	3 cut(s)	143, 380, 517
Mox20I	TGGCCA	1 cut(s)	774
Mph1103I	ATGCAT	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	4 cut(s)	317, 495, 747, 941
MslI	CAYNNNNRTG	1 cut(s)	884
Msp20I	TGGCCA	1 cut(s)	774
MspI	CCGG	3 cut(s)	96, 162, 260
MspR9I	CCNGG	2 cut(s)	261, 338
Mva1269I	GAATGC	1 cut(s)	1108
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	3 cut(s)	26, 225, 397
MwoI	GCNNNNNNNGC	5 cut(s)	32, 305, 394, 1024, 1044
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	478, 688
NlaIII	CATG	7 cut(s)	287, 298, 312, 562, 779, 883, 1102
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	1006
NsiI	ATGCAT	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	290
PasI	CCCWGGG	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	621
PctI	GAATGC	1 cut(s)	1108
PfeI	GAWTC	1 cut(s)	697
PkrI	GCNGC	9 cut(s)	10, 18, 34, 70, 73, 571, 610, 613, 1017
PleI	GAGTC	2 cut(s)	282, 411
PpsI	GAGTC	2 cut(s)	282, 411
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
RsaI	GTAC	2 cut(s)	128, 206
RsaNI	GTAC	2 cut(s)	127, 205
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	4 cut(s)	317, 495, 747, 941
SatI	GCNGC	9 cut(s)	9, 17, 33, 69, 72, 570, 609, 612, 1016
Sau3AI	GATC	2 cut(s)	478, 688
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	282, 412
ScrFI	CCNGG	2 cut(s)	261, 338
SduI	GDGCHC	4 cut(s)	183, 256, 414, 924
SetI	ASST	8 cut(s)	117, 304, 571, 610, 753, 803, 814, 1116
SfaNI	GCATC	3 cut(s)	295, 691, 720
SfcI	CTRYAG	2 cut(s)	1107, 1115
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	884
Sse9I	AATT	9 cut(s)	186, 319, 464, 656, 663, 744, 757, 986, 1041
SsiI	CCGC	6 cut(s)	9, 17, 26, 33, 69, 72
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	259, 336
TaaI	ACNGT	2 cut(s)	78, 126
TaqI	TCGA	2 cut(s)	236, 509
TasI	AATT	9 cut(s)	186, 319, 464, 656, 663, 744, 757, 986, 1041
TauI	GCSGC	5 cut(s)	11, 19, 35, 71, 74
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	4 cut(s)	317, 495, 747, 941
Tru9I	TTAA	4 cut(s)	317, 495, 747, 941
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	1006
TseI	GCWGC	4 cut(s)	569, 608, 611, 1015
Tsp45I	GTSAC	1 cut(s)	1006
TspDTI	ATGAA	7 cut(s)	283, 334, 372, 810, 844, 896, 1115
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	4 cut(s)	186, 319, 757, 986
XmiI	GTMKAC	1 cut(s)	1110
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.