Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005091

Physical Location & Seq

Genomic Coordinates Reverse (-)

15843832 .. 15848282

Gene Structure 4451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1098600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAGAGGTCGTCGGCAGTTGCGGTGGTTGTTGTAGCTTTCCTTATCGGCCTCTTGACCTCCGAAATCGCAGCAGAAATCGCCCAAAACTCGACCGAATTTTACAGAATCGGTCGCCGTCGTTCACCGCCGCAGTCTCTCTGTGCGCAGCTCATTGAGCCGTCTGGTTACTCTTGCTCCGAGCTCACGATTCAAACGAAAGATGGGTACTTACTGGGTCTTCAACGCGTGTCGTCGCGAAGCGGGGATTTGAGAACACAGCAGGGTCCTCCTGTGCTGCTTCAGCATGGGCTCTTCATGGCAGGTGATGCATGGTTCTTAAATTCTCCAGAAGAATCGCTGGGCTTTGTCCTTGCAGATGAAGGTTTTGATGTATGGGTAGGGAGTGTGCGTGGAACACGTTGGAGTCATGGACACGTATCTTTATCAGAGGAGGATAAGGAATTTTGGGATTGGAGTTGGCAGGAATTGGCTCTATTTGATCTATCAGAAATGATCCGCTACATATATTCAACAAGAAGCTCCAAAGTCTTTGTTGTTGGACATTCACAGGGAACAATTATGTCTTTAGCTGCTCTCACCCAGCCGGATATCGCAGAACTGGTTGAAGCTGCTGCTCTTTTCTGTCCAATATCATACTTGAAGCATATCACATCTAAATTTGCACTTAGAATGGTCAACATGCATGTTGATCAGATGATTCTTGCTATGGGCATCCATCAACTTAACTTTAGAAGTGAATGGGGAGTCAACCTTTTGGATTCAATATGTGATGGCCATGTTGACTGCAACGACTTGCTAACTTCCATAACAGGGAAGAATTGTTGCTTTAATAACTCACGTGTGGACTTGTATCTTGATTATGAACCACACCCAACATCCGCAAAGAACTTGCACCATCTCTTCCAGATGATCCGTAAGGGAACTTTTTCACAATACGACTATGGCCTGTTAAAAAATTTGAGGTTGTATGGTCAGTTGAAACCCCCTGCATTTGATCTTAGTTTCATACCCGAATCATTGCCACTGTTGATGGCTTGTGGGGGCAATGATGATTTAGCGGATATGACAGATTTCCATCACACTCTCAAGGAATTGCAGTCCACTCCGGAGTTGCTTTATCTCGAGAATTATGGTCATATCGACTTCATTGTGAGCGTTAAAGCCAAAGAAGACCTCCATGACCCCGTGATTAGGTTCTTTAGGTCATGGGGAAAATCTAGTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005576 GO:0005615 GO:0016298 GO:0016787 GO:0016788 GO:0044421 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00100 ko04142 ko04979 map00100 map04142 map04979

Pfam Domains

Protein Families

Abhydro_lipase Hydrolase_4

Protein Analysis

411

Amino Acids

46.13

Weight (kDa)

5.42

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	49 - 108	6.2e-17	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	90 - 210	1.1e-09	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15230
fragaria_vesca	FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050
malus_domestica	MD07G1242000.v1.1 MD10G1098600.v1.1
prunus_persica	Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1
pyrus_communis	pycom10g08450
rosa_chinensis	RchiOBHm_Chr6g0254931
rosa_laevigata	RLG00000014877
rosa_multiflora	Rmu_sc0000016.1_g000012 Rmu_sc0005039.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210470
rosa_rugosa	Rorug05G0555300 Rorug05G0555400 Rorug05G0555500
rosa_samantha	Rh6AG072900 Rh6BG065100 Rh6CG064900 Rh6DG061900
rosa_wichuraiana	Rw0G002710 Rw6G006350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc16I	TGCGCA	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	293
AccII	CGCG	2 cut(s)	228, 238
AccIII	TCCGGA	1 cut(s)	1108
AciI	CCGC	7 cut(s)	23, 128, 131, 243, 499, 882, 1061
AclWI	GGATC	2 cut(s)	490, 907
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	5 cut(s)	98, 322, 443, 659, 958
AcuI	CTGAAG	1 cut(s)	266
AcvI	CACGTG	1 cut(s)	842
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	813, 1194
AflIII	ACRYGT	4 cut(s)	226, 398, 415, 841
AgsI	TTSAA	7 cut(s)	194, 224, 513, 608, 643, 765, 982
AluBI	AGCT	6 cut(s)	38, 151, 184, 522, 572, 611
AluI	AGCT	6 cut(s)	38, 151, 184, 522, 572, 611
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	490, 907
Ama87I	CYCGRG	1 cut(s)	1124
Aor13HI	TCCGGA	1 cut(s)	1108
AoxI	GGCC	3 cut(s)	49, 775, 946
ApeKI	GCWGC	6 cut(s)	71, 148, 277, 572, 611, 614
ApoI	RAATTY	5 cut(s)	98, 322, 443, 659, 958
Asp700I	GAANNNNTTC	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	117, 317, 571
AvaI	CYCGRG	1 cut(s)	1124
AvaII	GGWCC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	777
BanII	GRGCYC	2 cut(s)	186, 294
BbrPI	CACGTG	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	212, 1179
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	6 cut(s)	83, 160, 264, 559, 598, 601
BccI	CCATC	6 cut(s)	197, 726, 767, 906, 1027, 1086
BceAI	ACGGC	2 cut(s)	102, 145
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	1221
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	7 cut(s)	72, 131, 149, 278, 573, 612, 615
BlsI	GCNGC	7 cut(s)	73, 132, 150, 279, 574, 613, 616
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	1124
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	298, 723
BmuI	ACTGGG	1 cut(s)	224
BpiI	GAAGAC	2 cut(s)	212, 1179
BpmI	CTGGAG	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	1073
BsaAI	YACGTR	2 cut(s)	418, 842
BsaBI	GATNNNNATC	1 cut(s)	1077
BsaWI	WCCGGW	1 cut(s)	1108
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 161, 191, 376, 406
Bsc4I	CCNNNNNNNGG	2 cut(s)	813, 1194
Bse1I	ACTGG	2 cut(s)	219, 606
Bse3DI	GCAATG	2 cut(s)	1019, 1054
Bse8I	GATNNNNATC	1 cut(s)	1077
BseAI	TCCGGA	1 cut(s)	1108
BseGI	GGATG	2 cut(s)	714, 878
BseJI	GATNNNNATC	1 cut(s)	1077
BseLI	CCNNNNNNNGG	2 cut(s)	813, 1194
BseMI	GCAATG	2 cut(s)	1019, 1054
BseNI	ACTGG	2 cut(s)	219, 606
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	6 cut(s)	83, 160, 264, 559, 598, 601
BseYI	CCCAGC	2 cut(s)	340, 582
Bsh1236I	CGCG	2 cut(s)	228, 238
Bsh1285I	CGRYCG	2 cut(s)	96, 115
BshFI	GGCC	3 cut(s)	51, 777, 948
BsiEI	CGRYCG	2 cut(s)	96, 115
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	1124
BsiSI	CCGG	2 cut(s)	587, 1109
BslI	CCNNNNNNNGG	2 cut(s)	813, 1194
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	51, 777, 948
BsoBI	CYCGRG	1 cut(s)	1124
Bsp1286I	GDGCHC	2 cut(s)	186, 294
Bsp13I	TCCGGA	1 cut(s)	1108
Bsp143I	GATC	5 cut(s)	481, 495, 691, 912, 997
Bsp68I	TCGCGA	1 cut(s)	238
BspACI	CCGC	7 cut(s)	23, 128, 131, 243, 499, 882, 1061
BspANI	GGCC	3 cut(s)	51, 777, 948
BspEI	TCCGGA	1 cut(s)	1108
BspFNI	CGCG	2 cut(s)	228, 238
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	2 cut(s)	490, 907
BspQI	GCTCTTC	1 cut(s)	299
BsrDI	GCAATG	2 cut(s)	1019, 1054
BsrI	ACTGG	2 cut(s)	219, 606
BssMI	GATC	5 cut(s)	481, 495, 691, 912, 997
Bst4CI	ACNGT	1 cut(s)	1029
Bst6I	CTCTTC	2 cut(s)	299, 908
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	2 cut(s)	418, 842
BstDEI	CTNAG	2 cut(s)	668, 1001
BstF5I	GGATG	2 cut(s)	714, 878
BstFNI	CGCG	2 cut(s)	228, 238
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	5 cut(s)	484, 498, 694, 915, 1000
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	5 cut(s)	481, 495, 691, 912, 997
BstMCI	CGRYCG	2 cut(s)	96, 115
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 157, 283, 308
BstNSI	RCATGY	2 cut(s)	685, 689
BstUI	CGCG	2 cut(s)	228, 238
BstV1I	GCAGC	6 cut(s)	83, 160, 264, 559, 598, 601
BstV2I	GAAGAC	2 cut(s)	212, 1179
BsuRI	GGCC	3 cut(s)	51, 777, 948
BtsCI	GGATG	2 cut(s)	714, 878
BtsIMutI	CAGTG	1 cut(s)	1025
BtuMI	TCGCGA	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	9 cut(s)	287, 298, 312, 410, 682, 686, 779, 1181, 1209
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	668, 1001
DpnI	GATC	5 cut(s)	483, 497, 693, 914, 999
DpnII	GATC	5 cut(s)	481, 495, 691, 912, 997
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	2 cut(s)	299, 908
EarI	CTCTTC	2 cut(s)	299, 908
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	186, 294
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	266
Eco72I	CACGTG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	1124
EcoICRI	GAGCTC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	592
EcoT22I	ATGCAT	2 cut(s)	313, 687
EcoT38I	GRGCYC	2 cut(s)	186, 294
FaeI	CATG	9 cut(s)	290, 301, 315, 413, 685, 689, 782, 1184, 1212
FatI	CATG	9 cut(s)	286, 297, 311, 409, 681, 685, 778, 1180, 1208
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	7 cut(s)	72, 131, 149, 278, 573, 612, 615
FokI	GGATG	2 cut(s)	701, 865
FriOI	GRGCYC	2 cut(s)	186, 294
Fsp4HI	GCNGC	7 cut(s)	72, 131, 149, 278, 573, 612, 615
FspBI	CTAG	1 cut(s)	1221
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	7 cut(s)	72, 131, 149, 278, 573, 612, 615
GsaI	CCCAGC	2 cut(s)	344, 586
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	51, 777, 948
HapII	CCGG	2 cut(s)	587, 1109
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	9 cut(s)	290, 301, 315, 413, 685, 689, 782, 1184, 1212
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	3 cut(s)	679, 751, 784
HindII	GTYRAC	3 cut(s)	679, 751, 784
HinfI	GANTC	8 cut(s)	108, 190, 335, 406, 700, 747, 761, 1016
HpaII	CCGG	2 cut(s)	587, 1109
HphI	GGTGA	3 cut(s)	117, 317, 571
Hpy166II	GTNNAC	6 cut(s)	125, 679, 751, 784, 847, 1104
Hpy188I	TCNGA	5 cut(s)	64, 181, 430, 490, 696
Hpy188III	TCNNGA	9 cut(s)	55, 187, 237, 329, 857, 907, 1109, 1124, 1126
Hpy8I	GTNNAC	6 cut(s)	125, 679, 751, 784, 847, 1104
Hpy99I	CGWCG	3 cut(s)	16, 123, 238
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	1029
HpyCH4IV	ACGT	3 cut(s)	400, 417, 841
HpyCH4V	TGCA	8 cut(s)	311, 356, 665, 685, 789, 895, 992, 1099
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 157, 283, 308
HpyF3I	CTNAG	2 cut(s)	668, 1001
HpySE526I	ACGT	3 cut(s)	400, 417, 841
Hsp92II	CATG	9 cut(s)	290, 301, 315, 413, 685, 689, 782, 1184, 1212
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	1108
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	5 cut(s)	481, 495, 691, 912, 997
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	182, 527
Lsp1109I	GCAGC	6 cut(s)	83, 160, 264, 559, 598, 601
LweI	GCATC	2 cut(s)	298, 723
MaeI	CTAG	1 cut(s)	1221
MaeII	ACGT	3 cut(s)	400, 417, 841
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	483, 497, 693, 914, 999
MboI	GATC	5 cut(s)	481, 495, 691, 912, 997
MboII	GAAGA	6 cut(s)	212, 286, 344, 829, 895, 1184
MhlI	GDGCHC	2 cut(s)	186, 294
MlsI	TGGCCA	1 cut(s)	777
MluI	ACGCGT	1 cut(s)	226
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	2 cut(s)	415, 756
MmeI	TCCRAC	2 cut(s)	383, 520
MnlI	CCTC	7 cut(s)	62, 70, 279, 424, 427, 957, 1187
Mox20I	TGGCCA	1 cut(s)	777
Mph1103I	ATGCAT	2 cut(s)	313, 687
MroI	TCCGGA	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	928
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	6 cut(s)	320, 726, 831, 953, 1161, 1231
Msp20I	TGGCCA	1 cut(s)	777
MspI	CCGG	2 cut(s)	587, 1109
MvnI	CGCG	2 cut(s)	228, 238
MwoI	GCNNNNNNNGC	4 cut(s)	80, 157, 283, 308
NdeII	GATC	5 cut(s)	481, 495, 691, 912, 997
NlaIII	CATG	9 cut(s)	290, 301, 315, 413, 685, 689, 782, 1184, 1212
NlaIV	GGNNCC	1 cut(s)	267
NruI	TCGCGA	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	147
NsiI	ATGCAT	2 cut(s)	313, 687
NspI	RCATGY	2 cut(s)	685, 689
PaeR7I	CTCGAG	1 cut(s)	1124
PaqCI	CACCTGC	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	928
PfeI	GAWTC	6 cut(s)	108, 190, 335, 700, 761, 1016
PkrI	GCNGC	7 cut(s)	73, 132, 150, 279, 574, 613, 616
PleI	GAGTC	2 cut(s)	414, 755
PmaCI	CACGTG	1 cut(s)	842
PmlI	CACGTG	1 cut(s)	842
PpsI	GAGTC	2 cut(s)	414, 755
Ppu21I	YACGTR	2 cut(s)	418, 842
PpuMI	RGGWCCY	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	266
PspCI	CACGTG	1 cut(s)	842
PspFI	CCCAGC	2 cut(s)	340, 582
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
RruI	TCGCGA	1 cut(s)	238
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	6 cut(s)	320, 726, 831, 953, 1161, 1231
SatI	GCNGC	7 cut(s)	72, 131, 149, 278, 573, 612, 615
Sau3AI	GATC	5 cut(s)	481, 495, 691, 912, 997
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	415, 756
SduI	GDGCHC	2 cut(s)	186, 294
SfaNI	GCATC	2 cut(s)	298, 723
Sfr274I	CTCGAG	1 cut(s)	1124
SinI	GGWCC	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	1124
SmlI	CTYRAG	2 cut(s)	1088, 1124
SmoI	CTYRAG	2 cut(s)	1088, 1124
SsiI	CCGC	7 cut(s)	23, 128, 131, 243, 499, 882, 1061
SspMI	CTAG	1 cut(s)	1221
SstI	GAGCTC	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	1029
TaiI	ACGT	3 cut(s)	403, 420, 844
TaqI	TCGA	3 cut(s)	92, 1125, 1143
TaqII	GACCGA	2 cut(s)	101, 110
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	6 cut(s)	108, 190, 335, 700, 761, 1016
Tru1I	TTAA	6 cut(s)	320, 726, 831, 953, 1161, 1231
Tru9I	TTAA	6 cut(s)	320, 726, 831, 953, 1161, 1231
TscAI	CASTG	1 cut(s)	1032
TseI	GCWGC	6 cut(s)	71, 148, 277, 572, 611, 614
TspDTI	ATGAA	5 cut(s)	286, 375, 879, 997, 1138
TspGWI	ACGGA	1 cut(s)	905
TspRI	CASTG	1 cut(s)	1032
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	5 cut(s)	98, 322, 443, 659, 958
XceI	RCATGY	2 cut(s)	685, 689
XhoI	CTCGAG	1 cut(s)	1124
XmnI	GAANNNNTTC	1 cut(s)	928
XspI	CTAG	1 cut(s)	1221
Zsp2I	ATGCAT	2 cut(s)	313, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.