Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005091

Physical Location & Seq

Genomic Coordinates Reverse (-)

59031390 .. 59034908

Gene Structure 3519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCCACTCCGCCGCCGTTCGCGGTGGCCGCTTTCCTCATCGCCTTCTTCCTCTCCAAAATCGCCGCCGCACAATTCCCCCAAAACTCAACCGGAATCTACAATCTCCACCTTCCAACACCGTACCAGTCTCTCTGCGCCAGTCTCATTCACCCCTCCGGTTACCCTTGCTCGGAGCACAAAATTCAAACTAGGGATGGCTACTTTTTGGGTCTTCAACGCGTGTCGTCTTCGAATGTGGATTTGAGAGCACAGCCGGGTCCTCCAGTGTTGCTCCAGCATGGACTCTTCATGGCAGGTGATGCATGGTTTCTAAATTCTCCCGAACAATCACTGGGCTTCATCCTCGCAGATGAAGGCTTTGATGTATGGGTAGGAAACGTGCGTGGAACGCGTTGGAGTCAGGGGCACATATCTTTATCAGAAGAGGATAAGGAATATTGGGATTGGAGTTGGCAGGAATTGGCTCTCTATGATCTTTCTGAAATGATTAACCACATATATTCGATAACAAACTCCAAAGTCTTTATTGTTGGACATTCACAGGGAACAATCATGTCTTTAGCTGCTCTCACCCAGCCAGATATAGCAGAAATGGTTGGAGCTGCTGCTCTTCTCTGTCCAATATCATACTTGGAACATATCAGCACTCAATTGGTAATTAGAATGGTTGATGTGCATCTTGATCAGATGATTCTTGCTATGGGCATCCATCAACTAAACTTTAGAAGTGATTGGGGAATTAACCTTCTGAATTCAATATGCGATGGCCATGTTGACTGCAATGACTTGCTAACGTCCATAACAGGGAAGAATTGTTGCTTCAATAACTCACGCGTGGACTTCTATCTGGATTATGAACCCCACCCATCATCCGCAAAGAACTTTCACCATCTCTTCCAAATGATTCGCAAGGGTACATTTTCAAAGTATGACTATGGCATCTTGAAAAATCTGATCGAGTATGGTCAGTTGAAACCCCCTGCATTTGATCTTAGTCTCATACCCAAGTCGTTGCCACTGTTGATGGCTTATGGAGGCAATGATGCTCTAGCAGATGTGGCAGATTTCCAGCACACCCTCAAGGAATTGCAGTCTACTCCACAGTTGGTTTATCTTGAGAACTATGGTCATGTCGACTTCATTGTCAGCACGACAGCCAAGGAAGATCTTCATGATCACTTGATTGGGTTTTTTAGGTCATGGGGAAAATCTAGTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005576 GO:0005615 GO:0016298 GO:0016787 GO:0016788 GO:0044421 GO:0052689

KEGG Pathways

Metabolic & Signaling

ko00100 ko04142 ko04979 map00100 map04142 map04979

Pfam Domains

Protein Families

Abhydro_lipase Hydrolase_4

Protein Analysis

409

Amino Acids

45.63

Weight (kDa)

5.47

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	48 - 106	4.2e-18	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	88 - 211	8.7e-11	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15230
fragaria_vesca	FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050 FvH4_2g05050
malus_domestica	MD07G1242000.v1.1 MD10G1098600.v1.1
prunus_persica	Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1 Prupe.8G135900_v2.0.a1
pyrus_communis	pycom10g08450
rosa_chinensis	RchiOBHm_Chr6g0254931
rosa_laevigata	RLG00000014877
rosa_multiflora	Rmu_sc0000016.1_g000012 Rmu_sc0005039.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210470
rosa_rugosa	Rorug05G0555300 Rorug05G0555400 Rorug05G0555500
rosa_samantha	Rh6AG072900 Rh6BG065100 Rh6CG064900 Rh6DG061900
rosa_wichuraiana	Rw0G002710 Rw6G006350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
AasI	GACNNNNNNGTC	1 cut(s)	1145
Acc36I	ACCTGC	1 cut(s)	287
AccI	GTMKAC	2 cut(s)	1097, 1137
AccII	CGCG	4 cut(s)	23, 222, 394, 837
AciI	CCGC	7 cut(s)	11, 14, 23, 30, 66, 69, 876
AcoI	YGGCCR	3 cut(s)	3, 27, 769
AcsI	RAATTY	3 cut(s)	183, 316, 754
AfaI	GTAC	2 cut(s)	125, 919
AfiI	CCNNNNNNNGG	2 cut(s)	172, 807
AflIII	ACRYGT	3 cut(s)	220, 392, 835
AgsI	TTSAA	7 cut(s)	188, 218, 759, 826, 927, 949, 976
AluBI	AGCT	2 cut(s)	566, 605
AluI	AGCT	2 cut(s)	566, 605
Alw21I	GWGCWC	2 cut(s)	180, 253
Alw26I	GTCTC	3 cut(s)	135, 149, 1004
AoxI	GGCC	3 cut(s)	3, 27, 769
ApeKI	GCWGC	3 cut(s)	566, 605, 608
ApoI	RAATTY	3 cut(s)	183, 316, 754
Asp700I	GAANNNNTTC	1 cut(s)	1170
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	4 cut(s)	143, 311, 565, 881
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	411
BalI	TGGCCA	2 cut(s)	5, 771
BbsI	GAAGAC	2 cut(s)	206, 222
Bbv12I	GWGCWC	2 cut(s)	180, 253
BbvI	GCAGC	3 cut(s)	553, 592, 595
BccI	CCATC	6 cut(s)	191, 720, 761, 877, 900, 1021
BclI	TGATCA	2 cut(s)	685, 1177
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	135, 149, 1004
BfaI	CTAG	3 cut(s)	192, 1052, 1215
BfuAI	ACCTGC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	1168
BisI	GCNGC	7 cut(s)	14, 30, 66, 69, 567, 606, 609
BlsI	GCNGC	7 cut(s)	15, 31, 67, 70, 568, 607, 610
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	5 cut(s)	292, 688, 717, 951, 1036
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	2 cut(s)	206, 222
BpmI	CTGGAG	2 cut(s)	249, 260
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	2 cut(s)	1067, 1139
BpuMI	CCSGG	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	678
BsaJI	CCNNGG	1 cut(s)	1161
BsaWI	WCCGGW	2 cut(s)	92, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 807
Bse1I	ACTGG	4 cut(s)	127, 141, 266, 339
Bse3DI	GCAATG	2 cut(s)	790, 1048
Bse8I	GATNNNNATC	1 cut(s)	678
BseDI	CCNNGG	1 cut(s)	1161
BseGI	GGATG	4 cut(s)	202, 342, 708, 872
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	2 cut(s)	172, 807
BseMI	GCAATG	2 cut(s)	790, 1048
BseNI	ACTGG	4 cut(s)	127, 141, 266, 339
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	553, 592, 595
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	4 cut(s)	23, 222, 394, 837
BshFI	GGCC	3 cut(s)	5, 29, 771
BsiHKAI	GWGCWC	2 cut(s)	180, 253
BsiSI	CCGG	3 cut(s)	93, 159, 257
BslI	CCNNNNNNNGG	2 cut(s)	172, 807
BsmAI	GTCTC	3 cut(s)	135, 149, 1004
BsnI	GGCC	3 cut(s)	5, 29, 771
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	180, 253, 411
Bsp143I	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
BspACI	CCGC	7 cut(s)	11, 14, 23, 30, 66, 69, 876
BspANI	GGCC	3 cut(s)	5, 29, 771
BspFNI	CGCG	4 cut(s)	23, 222, 394, 837
BspHI	TCATGA	1 cut(s)	1174
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	790, 1048
BsrI	ACTGG	4 cut(s)	127, 141, 266, 339
BssECI	CCNNGG	1 cut(s)	1161
BssMI	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
BssT1I	CCWWGG	1 cut(s)	1161
Bst4CI	ACNGT	3 cut(s)	123, 1023, 1107
Bst6I	CTCTTC	4 cut(s)	293, 420, 618, 902
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBI	TTCGAA	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	995
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	4 cut(s)	202, 342, 708, 872
BstFNI	CGCG	4 cut(s)	23, 222, 394, 837
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	6 cut(s)	478, 688, 960, 994, 1171, 1180
BstMAI	GTCTC	3 cut(s)	135, 149, 1004
BstMBI	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 302, 391, 1061
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	4 cut(s)	23, 222, 394, 837
BstV1I	GCAGC	3 cut(s)	553, 592, 595
BstV2I	GAAGAC	2 cut(s)	206, 222
BstX2I	RGATCY	1 cut(s)	1168
BstYI	RGATCY	1 cut(s)	1168
BsuRI	GGCC	3 cut(s)	5, 29, 771
BtgZI	GCGATG	2 cut(s)	25, 780
BtsCI	GGATG	4 cut(s)	202, 342, 708, 872
BtsIMutI	CAGTG	3 cut(s)	273, 332, 1019
BveI	ACCTGC	1 cut(s)	287
CciI	TCATGA	1 cut(s)	1174
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	124, 918
CviAII	CATG	8 cut(s)	281, 292, 306, 556, 773, 1133, 1175, 1203
CviQI	GTAC	2 cut(s)	124, 918
DdeI	CTNAG	1 cut(s)	995
DpnI	GATC	6 cut(s)	477, 687, 959, 993, 1170, 1179
DpnII	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
DrdI	GACNNNNNNGTC	1 cut(s)	1145
DseDI	GACNNNNNNGTC	1 cut(s)	1145
EaeI	YGGCCR	3 cut(s)	3, 27, 769
Eam1104I	CTCTTC	4 cut(s)	293, 420, 618, 902
EarI	CTCTTC	4 cut(s)	293, 420, 618, 902
Eco130I	CCWWGG	1 cut(s)	1161
Eco47I	GGWCC	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	1161
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	1161
FaeI	CATG	8 cut(s)	284, 295, 309, 559, 776, 1136, 1178, 1206
FatI	CATG	8 cut(s)	280, 291, 305, 555, 772, 1132, 1174, 1202
FbaI	TGATCA	2 cut(s)	685, 1177
FblI	GTMKAC	2 cut(s)	1097, 1137
Fnu4HI	GCNGC	7 cut(s)	14, 30, 66, 69, 567, 606, 609
FokI	GGATG	4 cut(s)	209, 329, 695, 859
Fsp4HI	GCNGC	7 cut(s)	14, 30, 66, 69, 567, 606, 609
FspBI	CTAG	3 cut(s)	192, 1052, 1215
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	7 cut(s)	14, 30, 66, 69, 567, 606, 609
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	2 cut(s)	249, 260
HaeIII	GGCC	3 cut(s)	5, 29, 771
HapII	CCGG	3 cut(s)	93, 159, 257
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	8 cut(s)	284, 295, 309, 559, 776, 1136, 1178, 1206
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	2 cut(s)	778, 1138
HindII	GTYRAC	2 cut(s)	778, 1138
HinfI	GANTC	5 cut(s)	96, 285, 400, 694, 907
HpaII	CCGG	3 cut(s)	93, 159, 257
HphI	GGTGA	4 cut(s)	143, 311, 565, 881
Hpy166II	GTNNAC	4 cut(s)	778, 841, 1098, 1138
Hpy188I	TCNGA	6 cut(s)	175, 424, 484, 690, 753, 957
Hpy188III	TCNNGA	6 cut(s)	323, 683, 851, 946, 1118, 1175
Hpy8I	GTNNAC	4 cut(s)	778, 841, 1098, 1138
HpyAV	CCTTC	4 cut(s)	55, 122, 350, 758
HpyCH4III	ACNGT	3 cut(s)	123, 1023, 1107
HpyCH4IV	ACGT	2 cut(s)	381, 797
HpyCH4V	TGCA	5 cut(s)	305, 679, 783, 986, 1093
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 302, 391, 1061
HpyF3I	CTNAG	1 cut(s)	995
HpySE526I	ACGT	2 cut(s)	381, 797
Hsp92II	CATG	8 cut(s)	284, 295, 309, 559, 776, 1136, 1178, 1206
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	2 cut(s)	685, 1177
Kzo9I	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	175, 279, 602
Lsp1109I	GCAGC	3 cut(s)	553, 592, 595
LweI	GCATC	5 cut(s)	292, 688, 717, 951, 1036
MaeI	CTAG	3 cut(s)	192, 1052, 1215
MaeII	ACGT	2 cut(s)	381, 797
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	6 cut(s)	477, 687, 959, 993, 1170, 1179
MboI	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	1 cut(s)	1168
MhlI	GDGCHC	3 cut(s)	180, 253, 411
MlsI	TGGCCA	2 cut(s)	5, 771
MluI	ACGCGT	3 cut(s)	220, 392, 835
MluNI	TGGCCA	2 cut(s)	5, 771
MlyI	GAGTC	2 cut(s)	279, 409
MmeI	TCCRAC	4 cut(s)	140, 377, 514, 580
MnlI	CCTC	8 cut(s)	47, 62, 166, 273, 356, 421, 1031, 1091
Mox20I	TGGCCA	2 cut(s)	5, 771
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	1170
MscI	TGGCCA	2 cut(s)	5, 771
MseI	TTAA	3 cut(s)	492, 744, 1225
Msp20I	TGGCCA	2 cut(s)	5, 771
MspI	CCGG	3 cut(s)	93, 159, 257
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	653
MvnI	CGCG	4 cut(s)	23, 222, 394, 837
MwoI	GCNNNNNNNGC	4 cut(s)	29, 302, 391, 1061
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
NlaIII	CATG	8 cut(s)	284, 295, 309, 559, 776, 1136, 1178, 1206
NlaIV	GGNNCC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	233
PagI	TCATGA	1 cut(s)	1174
PaqCI	CACCTGC	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	1170
PfeI	GAWTC	3 cut(s)	96, 694, 907
PkrI	GCNGC	7 cut(s)	15, 31, 67, 70, 568, 607, 610
PleI	GAGTC	2 cut(s)	279, 408
PpsI	GAGTC	2 cut(s)	279, 408
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
PspEI	GGTNACC	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	260
PspPPI	RGGWCCY	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	1168
RsaI	GTAC	2 cut(s)	125, 919
RsaNI	GTAC	2 cut(s)	124, 918
SalI	GTCGAC	1 cut(s)	1136
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	492, 744, 1225
SatI	GCNGC	7 cut(s)	14, 30, 66, 69, 567, 606, 609
Sau3AI	GATC	6 cut(s)	475, 685, 957, 991, 1168, 1177
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	279, 409
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	3 cut(s)	180, 253, 411
SetI	ASST	8 cut(s)	114, 301, 384, 568, 607, 750, 800, 1202
SfaNI	GCATC	5 cut(s)	292, 688, 717, 951, 1036
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	1082, 1118
SmoI	CTYRAG	2 cut(s)	1082, 1118
SsiI	CCGC	7 cut(s)	11, 14, 23, 30, 66, 69, 876
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	3 cut(s)	192, 1052, 1215
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	1161
TaaI	ACNGT	3 cut(s)	123, 1023, 1107
TaiI	ACGT	2 cut(s)	384, 800
TaqI	TCGA	4 cut(s)	233, 506, 960, 1137
TauI	GCSGC	4 cut(s)	16, 32, 68, 71
TfiI	GAWTC	3 cut(s)	96, 694, 907
Tru1I	TTAA	3 cut(s)	492, 744, 1225
Tru9I	TTAA	3 cut(s)	492, 744, 1225
TscAI	CASTG	3 cut(s)	273, 339, 1026
TseI	GCWGC	3 cut(s)	566, 605, 608
TspDTI	ATGAA	6 cut(s)	280, 331, 369, 873, 1132, 1163
TspRI	CASTG	3 cut(s)	273, 339, 1026
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	3 cut(s)	183, 316, 754
XmiI	GTMKAC	2 cut(s)	1097, 1137
XmnI	GAANNNNTTC	1 cut(s)	1170
XspI	CTAG	3 cut(s)	192, 1052, 1215
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.