AT2G15980

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015238
Physical Location & Seq
Reverse (-)
6951349 .. 6952845
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15980.1

Sequence Viewer

Length: 1497 bp
ATGTCAACTTCAATACTAAGACGGATACTCGACCCGACCCGGAAACCCAAACCCGATGCAATCCTCTCAATCTCTCTCCTCACTACCGTCTCTTCTCCGCCGTCTCCGCCATCAGATCCTCTAATTTCCGACGCCGTCTCAATCCTAACACACCACCGCTCCAAATCCCGTTGGTCCACTCTCCGATCACTCCAGCCTTCAGGCTTCACACCTTCTCAATTCTCCGAAATCACTCTCTGCCTCCGCAACAATCCTCACCTCTCTCTCCGTTTCTTCCTCTTCACTCGCCGTTACTCTCTCTGCTCTCACGACACACACTCCTGCTCAACTCTCATCCACATCCTCTCTCGATCTCGTCTCAAAAGCCACGCTAGTGAAATCATACGTCTCGCTCTCCGTCTCGCCGCCACCGACGAAGACGAAGACAGAGTCTTGAAAGTGTTCCGTTCGTTGATTAAGAGTTATAATCGATGTGGCTCTGCTCCGTTTGTATTCGATTTGTTGATAAAATCTTGTCTTGATTCGAAAGAGATTGATGGAGCTGTGATGGTTATGAGAAAGTTAAGGTCTAGAGGAATCAATGCACAGATTAGTACTTGTAATGCTTTGATCACAGAGGTTTCTAGGCGTAGAGGTGCTTCTAATGGATATAAGATGTATAGAGAAGTTTTTGGTTTAGATGATGTTAGTGTTGATGAAGCTAAAAAGATGATAGGTAAGATTAAGCCAAATGCGACCACTTTTAATTCGATGATGGTGAGTTTTTATAGAGAAGGTGAGACTGAGATGGTGGAGAGGATATGGAGAGAAATGGAGGAGGAAGTTGGATGTTCTCCGAATGTTTATAGCTATAATGTTTTGATGGAGGCGTATTGTGCGCGAGGTTTGATGAGTGAAGCGGAGAAGGTATGGGAAGAGATGAAGGTGAGAGGAGTGGTTTATGATATTGTGGCTTATAACACTATGATTGGTGGGCTTTGTAGTAACTTTGAAGTTGTGAAAGCGAAGGAGCTTTTTCGAGATATGGGGTTGAAGGGGATTGAGTGTACTTGTTTGACGTATGAGCATCTTGTTAACGGGTATTGTAAAGCGGGGGATGTTGATTCGGGTTTGGTTGTTTATAGGGAGATGAAAAGGAAAGGTTTTGAGGCAGATGGTTTAACAATTGAAGCGTTAGTTGAAGGGCTATGTGATGATAGGGATGGACAGAGAGTTGTTGAAGCTGCGGATATCGTGAAGGATGCGGTGAGAGAAGCAATGTTTTATCCTAGTCGGAATTGTTATGAGTTGTTGGTAAAGAGGTTGTGTGAAGATGGGAAGATGGATAGAGCATTGAACATTCAGGCTGAGATGGTTGGGAAAGGATTTAAGCCGAGTCAAGAGACGTATAGAGCTTTTATCGACGGGTATGGAATAGTAGGTGATGAGGAAACATCAGCATTGTTGGCCATAGAAATGGCTGAATCACTCAAGCTAAGAGCAGAAGAAGAAAGCTAG

Protein Analysis

498

Amino Acids

56.12

Weight (kDa)

6.51

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 241 - 292 1.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 243 - 292 6.7e-11 PPR repeat family
PPR_1 PF12854 276 - 308 4.4e-10 PPR repeat
PPR_2 PF13041 279 - 313 1.4e-09 PPR repeat family
PPR PF01535 282 - 312 3.3e-08 PPR repeat
PPR_1 PF12854 310 - 342 1.6e-07 PPR repeat
PPR_2 PF13041 315 - 363 1.2e-12 PPR repeat family
PPR PF01535 317 - 347 5.8e-06 PPR repeat
PPR_1 PF12854 345 - 378 5.8e-08 PPR repeat
PPR_2 PF13041 353 - 398 8.4e-10 PPR repeat family
PPR PF01535 353 - 382 1.6e-06 PPR repeat
PPR_2 PF13041 427 - 470 1.2e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15980
fragaria_vesca FvH4_2g02001 FvH4_2g02001 FvH4_2g02001
malus_domestica MD10G1084800.v1.1
prunus_persica Prupe.8G107700_v2.0.a1
pyrus_communis pycom10g06650
rosa_chinensis RchiOBHm_Chr6g0245191
rosa_laevigata RLG00000015317
rosa_multiflora Rmu_sc0027529.1_g000005 Rmu_sc0038123.1_g000001
rosa_roxburghii Rroxscaffold_7G00215370
rosa_rugosa Rorug05G0512900
rosa_samantha Rh6AG027800 Rh6BG023900
rosa_wichuraiana Rw6G002350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 465, 957
AccBSI CCGCTC 1 cut(s) 159
AccII CGCG 1 cut(s) 880
AciI CCGC 9 cut(s) 98, 107, 157, 244, 405, 899, 1091, 1226, 1244
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 1446
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 595, 1048
AgsI TTSAA 8 cut(s) 12, 436, 992, 1033, 1169, 1181, 1220, 1336
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 8 cut(s) 542, 701, 849, 1012, 1223, 1394, 1474, 1494
AluI AGCT 8 cut(s) 542, 701, 849, 1012, 1223, 1394, 1474, 1494
Alw26I GTCTC 8 cut(s) 94, 108, 142, 362, 392, 404, 773, 1376
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 1446
ApeKI GCWGC 1 cut(s) 1223
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
Asp700I GAANNNNTTC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 880
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 6 cut(s) 248, 769, 788, 937, 1258, 1433
AsuII TTCGAA 1 cut(s) 524
AvaII GGWCC 1 cut(s) 174
BalI TGGCCA 1 cut(s) 1448
BarI GAAGNNNNNNTAC 2 cut(s) 622, 654
BbsI GAAGAC 2 cut(s) 423, 429
BbvI GCAGC 1 cut(s) 1210
BceAI ACGGC 3 cut(s) 85, 119, 273
BciVI GTATCC 1 cut(s) 18
BclI TGATCA 1 cut(s) 609
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 8 cut(s) 94, 108, 142, 362, 392, 404, 773, 1376
BfaI CTAG 5 cut(s) 372, 570, 624, 1269, 1495
BfuI GTATCC 1 cut(s) 18
BisI GCNGC 2 cut(s) 405, 1224
BlsI GCNGC 2 cut(s) 406, 1225
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 3 cut(s) 46, 1075, 1231
BpiI GAAGAC 2 cut(s) 423, 429
BpmI CTGGAG 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 1454
BpuMI CCSGG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 132
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 302, 332
Bse3DI GCAATG 1 cut(s) 1263
BseCI ATCGAT 1 cut(s) 469
BseGI GGATG 6 cut(s) 333, 339, 833, 1102, 1207, 1246
BseMI GCAATG 1 cut(s) 1263
BseMII CTCAG 2 cut(s) 774, 1338
BseRI GAGGAG 3 cut(s) 68, 830, 945
BseXI GCAGC 1 cut(s) 1210
Bsh1236I CGCG 1 cut(s) 880
BshFI GGCC 1 cut(s) 1448
BshVI ATCGAT 1 cut(s) 469
BsiSI CCGG 1 cut(s) 40
BsmAI GTCTC 8 cut(s) 94, 108, 142, 362, 392, 404, 773, 1376
BsmBI CGTCTC 7 cut(s) 94, 108, 142, 362, 392, 404, 1376
BsnI GGCC 1 cut(s) 1448
Bsp119I TTCGAA 1 cut(s) 524
Bsp143I GATC 4 cut(s) 115, 185, 350, 609
BspACI CCGC 9 cut(s) 98, 107, 157, 244, 405, 899, 1091, 1226, 1244
BspANI GGCC 1 cut(s) 1448
BspCNI CTCAG 2 cut(s) 775, 1339
BspDI ATCGAT 1 cut(s) 469
BspFNI CGCG 1 cut(s) 880
BspPI GGATC 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 1263
BssMI GATC 4 cut(s) 115, 185, 350, 609
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 3 cut(s) 97, 284, 909
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 524
BstDEI CTNAG 4 cut(s) 17, 783, 1347, 1475
BstF5I GGATG 6 cut(s) 333, 339, 833, 1102, 1207, 1246
BstFNI CGCG 1 cut(s) 880
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 4 cut(s) 118, 188, 353, 612
BstMAI GTCTC 8 cut(s) 94, 108, 142, 362, 392, 404, 773, 1376
BstMBI GATC 4 cut(s) 115, 185, 350, 609
BstMWI GCNNNNNNNGC 3 cut(s) 106, 875, 1445
BstSCI CCNGG 1 cut(s) 38
BstUI CGCG 1 cut(s) 880
BstV1I GCAGC 1 cut(s) 1210
BstV2I GAAGAC 2 cut(s) 423, 429
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 1456
BstYI RGATCY 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 469
BsuI GTATCC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 1448
BsuTUI ATCGAT 1 cut(s) 469
BtsCI GGATG 6 cut(s) 333, 339, 833, 1102, 1207, 1246
CfoI GCGC 1 cut(s) 880
Cfr13I GGNCC 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 469
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 594, 1047
CviQI GTAC 2 cut(s) 594, 1047
DdeI CTNAG 4 cut(s) 17, 783, 1347, 1475
DpnI GATC 4 cut(s) 117, 187, 352, 611
DpnII GATC 4 cut(s) 115, 185, 350, 609
EaeI YGGCCR 1 cut(s) 1446
Eam1104I CTCTTC 3 cut(s) 97, 284, 909
EarI CTCTTC 3 cut(s) 97, 284, 909
EciI GGCGGA 2 cut(s) 87, 96
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 1231
Esp3I CGTCTC 7 cut(s) 94, 108, 142, 362, 392, 404, 1376
FauI CCCGC 1 cut(s) 1084
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 405, 1224
FokI GGATG 6 cut(s) 320, 326, 840, 1109, 1214, 1253
Fsp4HI GCNGC 2 cut(s) 405, 1224
FspBI CTAG 5 cut(s) 372, 570, 624, 1269, 1495
GlaI GCGC 1 cut(s) 879
GluI GCNGC 2 cut(s) 405, 1224
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 1448
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 880
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HincII GTYRAC 2 cut(s) 6, 1075
HindII GTYRAC 2 cut(s) 6, 1075
HinfI GANTC 6 cut(s) 429, 521, 576, 1103, 1375, 1463
HpaI GTTAAC 1 cut(s) 1075
HpaII CCGG 1 cut(s) 40
HphI GGTGA 6 cut(s) 248, 769, 788, 937, 1258, 1433
Hpy166II GTNNAC 4 cut(s) 6, 177, 1047, 1075
Hpy188I TCNGA 6 cut(s) 115, 130, 185, 226, 837, 1275
Hpy188III TCNNGA 8 cut(s) 308, 348, 433, 518, 570, 1019, 1234, 1379
Hpy8I GTNNAC 4 cut(s) 6, 177, 1047, 1075
Hpy99I CGWCG 3 cut(s) 134, 416, 1406
HpyAV CCTTC 9 cut(s) 207, 222, 767, 898, 916, 1000, 1027, 1175, 1231
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 3 cut(s) 385, 1058, 1385
HpyCH4V TGCA 2 cut(s) 59, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 875, 1445
HpyF3I CTNAG 4 cut(s) 17, 783, 1347, 1475
HpySE526I ACGT 3 cut(s) 385, 1058, 1385
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 1 cut(s) 878
Ksp22I TGATCA 1 cut(s) 609
KspAI GTTAAC 1 cut(s) 1075
Kzo9I GATC 4 cut(s) 115, 185, 350, 609
LmnI GCTCC 4 cut(s) 164, 487, 539, 1009
LpnPI CCDG 5 cut(s) 53, 186, 206, 334, 1328
Lsp1109I GCAGC 1 cut(s) 1210
LweI GCATC 3 cut(s) 46, 1075, 1231
MaeI CTAG 5 cut(s) 372, 570, 624, 1269, 1495
MaeII ACGT 3 cut(s) 385, 1058, 1385
MaeIII GTNAC 2 cut(s) 290, 983
MalI GATC 4 cut(s) 117, 187, 352, 611
MbiI CCGCTC 1 cut(s) 159
MboI GATC 4 cut(s) 115, 185, 350, 609
MboII GAAGA 9 cut(s) 84, 265, 271, 428, 434, 926, 1322, 1330, 1496
MfeI CAATTG 1 cut(s) 1164
MflI RGATCY 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 1448
MluCI AATT 5 cut(s) 123, 218, 745, 1164, 1276
MluNI TGGCCA 1 cut(s) 1448
MlyI GAGTC 2 cut(s) 438, 1384
MmeI TCCRAC 3 cut(s) 153, 805, 1253
Mox20I TGGCCA 1 cut(s) 1448
MroXI GAANNNNTTC 1 cut(s) 440
MscI TGGCCA 1 cut(s) 1448
MseI TTAA 7 cut(s) 456, 563, 723, 744, 1074, 1160, 1368
MslI CAYNNNNRTG 2 cut(s) 372, 1454
Msp20I TGGCCA 1 cut(s) 1448
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 40
MunI CAATTG 1 cut(s) 1164
MvnI CGCG 1 cut(s) 880
MwoI GCNNNNNNNGC 3 cut(s) 106, 875, 1445
NciI CCSGG 1 cut(s) 40
NdeII GATC 4 cut(s) 115, 185, 350, 609
NmeAIII GCCGAG 1 cut(s) 1398
NspV TTCGAA 1 cut(s) 524
OliI CACNNNNGTG 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 4 cut(s) 521, 576, 1103, 1463
PflFI GACNNNGTC 2 cut(s) 134, 428
PkrI GCNGC 2 cut(s) 406, 1225
PleI GAGTC 2 cut(s) 437, 1383
PpsI GAGTC 2 cut(s) 437, 1383
PsiI TTATAA 2 cut(s) 465, 957
PspPI GGNCC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 115
PsyI GACNNNGTC 2 cut(s) 134, 428
RsaI GTAC 2 cut(s) 595, 1048
RsaNI GTAC 2 cut(s) 594, 1047
RseI CAYNNNNRTG 2 cut(s) 372, 1454
SaqAI TTAA 7 cut(s) 456, 563, 723, 744, 1074, 1160, 1368
SatI GCNGC 2 cut(s) 405, 1224
Sau3AI GATC 4 cut(s) 115, 185, 350, 609
Sau96I GGNCC 1 cut(s) 174
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 2 cut(s) 438, 1384
ScrFI CCNGG 1 cut(s) 40
SfaNI GCATC 3 cut(s) 46, 1075, 1231
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 372, 1454
SmlI CTYRAG 1 cut(s) 1469
SmoI CTYRAG 1 cut(s) 1469
Sse9I AATT 5 cut(s) 123, 218, 745, 1164, 1276
SsiI CCGC 9 cut(s) 98, 107, 157, 244, 405, 899, 1091, 1226, 1244
SspMI CTAG 5 cut(s) 372, 570, 624, 1269, 1495
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 3 cut(s) 388, 1061, 1388
TaqI TCGA 8 cut(s) 30, 349, 469, 495, 524, 749, 1018, 1401
TasI AATT 5 cut(s) 123, 218, 745, 1164, 1276
TatI WGTACW 2 cut(s) 593, 1046
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 4 cut(s) 521, 576, 1103, 1463
Tru1I TTAA 7 cut(s) 456, 563, 723, 744, 1074, 1160, 1368
Tru9I TTAA 7 cut(s) 456, 563, 723, 744, 1074, 1160, 1368
TseI GCWGC 1 cut(s) 1223
TspDTI ATGAA 3 cut(s) 711, 935, 1145
TspGWI ACGGA 5 cut(s) 37, 257, 386, 434, 474
Tth111I GACNNNGTC 2 cut(s) 134, 428
VpaK11BI GGWCC 1 cut(s) 174
XbaI TCTAGA 1 cut(s) 569
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 5 cut(s) 372, 570, 624, 1269, 1495
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.