Rh6AG027800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015238
Physical Location & Seq
Forward (+)
3450429 .. 3453151
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG027800.1

Sequence Viewer

Length: 1434 bp
ATGGCGGCAGTTCAAATCTTCAAAAGCTCTCGTCTTTTCCCAGCTACAAAACCCAACCCCCTCCTCTGCTTCTCCCACTTCTCCTCCGCGCCGTCCGATCAAACCCCACCAGAACCCAACCCCCTAATCCCCTCTGTCGTCTCCATCCTAACCAACCTCCGATCCAAGTCCCGCTGGGGCTACCTCCGCTCTCTCTACCCTTCCGGTTTCACCCCAACCGACTTTTCCCAAATCGCCCTCCAAATAAAAAACAATCCCCACCTCGTCCTCCGCTTCTTCCAATGGACCCACAACCACAACCACAACCTCCTCTCCTTCTCCACCACCATCCACATCCTCGCTCGCTCTCGCCTCAAATCCCAAGCCTATTCCCTTATCCGCGACGCCATTCGGGTTTCGGAGCCTCTGCAAGTGTTCGAAGCCCTGGTCAAGACTTACCGGCAATGCGGGTCGGCGCCGTTCGTGTTTGATTACCTGATCAGAGCTTGTTTGGAGTCCAAGAAAATCGACCCGGCAATGCAGATTGTTAGAATGTTGCTCAGCCGCGGCATCAATCCTGGTTTGAACACCTGCAATAGTCTGATTCGGTGCGTAATGCAGGCTCGAGGTGCGTGGGCGGGTTATGAGATTTACAGAGAGGTTTTCGGATTGGATGGTGGGGTTAGGGTGGCGAGAACTAGGCCGAATGTGCAGACTTTCAATGAATTGATGTTGGGGTTTCATCAGGACGGGGCGGTGGAGATGGTGGAGGAGATTTGGGACCAAATGCCGGAGTTTGGTTGCTGTGCTGATGTTTATAGTTACAGCATTTTGATGGAGACTTATTGTGAGGAGGAGAAAATGAGTAAAGCGGAGGAGTTGTGGGAAGAAATGAGAGGTAAGGGTGTGGAGCCTGATGCTGTTGCTTATAACACTATGATTGGGGGGTTTTGCAGAGTTGGAGAGATTGAAATGGCTGAAGAGTTTTTCAAACAAATGGGATTGAGTGGGATAGAGAGTAGTGGTGCCGCTTGCGAGCATCTGGTTAGAGGGTACTGTAAAATAGGGAAAATTGATGAAGCAATGCTAGTGTATAAGGATATGCTTAGGAAAGATTTTAGGGCCGAGAGTTTAACTGTGGATGAGTTGATTAGAGGGCTTTGTGGTGAGAGCAGGGTTTTAGAAGCCTTGGAGGTTATGAGAGCGGCAATGATAGATTATGGTTTTTGTCCGAGGGAGAAGTCGTATGAGTTTTTGATAGGAGGGTTGTGTGAGCAGGGGAAGTTGGAAGAAGCGCTTAAGCTTCAGGCTCAGATGGTTGGTAAAGGGTTTAAACCAAATTCTGAAATCTATAGTGCATTTATTAGTGGATATATGAAAGAAGGGAACAAGGAAGTAGCAGAATTGTTGAGGAATGAAATGTTGGATACTCAGGTGTGTGGGATTGCGGATTAG

Protein Analysis

477

Amino Acids

53.84

Weight (kDa)

5.79

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 228 - 276 1.2e-09 PPR repeat family
PPR_1 PF12854 260 - 292 4.2e-08 PPR repeat
PPR_2 PF13041 270 - 312 7.7e-13 PPR repeat family
PPR_1 PF12854 294 - 326 2.6e-11 PPR repeat
PPR_2 PF13041 298 - 332 6.3e-09 PPR repeat family
PPR PF01535 301 - 331 5.3e-08 PPR repeat
PPR_2 PF13041 338 - 381 8.5e-07 PPR repeat family
PPR_2 PF13041 408 - 441 9.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15980
fragaria_vesca FvH4_2g02001 FvH4_2g02001 FvH4_2g02001
malus_domestica MD10G1084800.v1.1
prunus_persica Prupe.8G107700_v2.0.a1
pyrus_communis pycom10g06650
rosa_chinensis RchiOBHm_Chr6g0245191
rosa_laevigata RLG00000015317
rosa_multiflora Rmu_sc0027529.1_g000005 Rmu_sc0038123.1_g000001
rosa_roxburghii Rroxscaffold_7G00215370
rosa_rugosa Rorug05G0512900
rosa_samantha Rh6AG027800 Rh6BG023900
rosa_wichuraiana Rw6G002350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AarI CACCTGC 1 cut(s) 578
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 2 cut(s) 454, 1004
AccBSI CCGCTC 2 cut(s) 189, 1184
AccII CGCG 3 cut(s) 89, 381, 546
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 1318
AcuI CTGAAG 2 cut(s) 978, 1268
AcyI GRCGYC 2 cut(s) 384, 455
AfaI GTAC 1 cut(s) 1034
AfeI AGCGCT 1 cut(s) 1275
AfiI CCNNNNNNNGG 2 cut(s) 769, 776
AflII CTTAAG 1 cut(s) 1277
AgsI TTSAA 6 cut(s) 14, 22, 565, 700, 950, 970
AjnI CCWGG 2 cut(s) 423, 556
AjuI GAANNNNNNNTTGG 4 cut(s) 208, 240, 1385, 1417
AluBI AGCT 4 cut(s) 27, 44, 485, 1282
AluI AGCT 4 cut(s) 27, 44, 485, 1282
Alw26I GTCTC 2 cut(s) 145, 812
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 603
Aor51HI AGCGCT 1 cut(s) 1275
AoxI GGCC 2 cut(s) 680, 1101
ApoI RAATTY 1 cut(s) 1318
ArsI GACNNNNNNTTYG 2 cut(s) 411, 443
AspLEI GCGC 3 cut(s) 91, 457, 1276
AspS9I GGNCC 3 cut(s) 285, 760, 1101
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 202, 1157
AsuII TTCGAA 1 cut(s) 417
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 2 cut(s) 285, 760
BaeI ACNNNNGTAYC 2 cut(s) 1398, 1431
BanI GGYRCC 2 cut(s) 454, 1004
BccI CCATC 6 cut(s) 152, 335, 647, 736, 808, 1288
BceAI ACGGC 2 cut(s) 76, 442
BciT130I CCWGG 2 cut(s) 425, 558
BciVI GTATCC 1 cut(s) 1399
BclI TGATCA 1 cut(s) 477
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 2 cut(s) 145, 812
BfaI CTAG 2 cut(s) 678, 1067
BfmI CTRYAG 1 cut(s) 1330
BfoI RGCGCY 2 cut(s) 458, 1277
BfrI CTTAAG 1 cut(s) 1277
BfuAI ACCTGC 1 cut(s) 578
BfuI GTATCC 1 cut(s) 1399
BisI GCNGC 5 cut(s) 6, 544, 547, 1008, 1185
BlpI GCTNAGC 1 cut(s) 539
BlsI GCNGC 5 cut(s) 7, 545, 548, 1009, 1186
Bme1390I CCNGG 3 cut(s) 425, 512, 558
Bme18I GGWCC 2 cut(s) 285, 760
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 3 cut(s) 285, 760, 1101
BmiI GGNNCC 6 cut(s) 287, 402, 456, 761, 891, 1006
BmrFI CCNGG 3 cut(s) 425, 512, 558
BmsI GCATC 3 cut(s) 558, 886, 1027
Bpu10I CCTNAGC 1 cut(s) 1085
Bpu1102I GCTNAGC 1 cut(s) 539
Bpu14I TTCGAA 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 512
BsaHI GRCGYC 2 cut(s) 384, 455
BsaJI CCNNGG 4 cut(s) 423, 544, 1167, 1211
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 296, 326, 845, 875, 1208, 1238
Bsc4I CCNNNNNNNGG 2 cut(s) 769, 776
Bse118I RCCGGY 1 cut(s) 438
Bse3DI GCAATG 4 cut(s) 449, 522, 1068, 1194
BseBI CCWGG 2 cut(s) 425, 558
BseDI CCNNGG 4 cut(s) 423, 544, 1167, 1211
BseGI GGATG 5 cut(s) 144, 327, 333, 658, 1126
BseLI CCNNNNNNNGG 2 cut(s) 769, 776
BseMI GCAATG 4 cut(s) 449, 522, 1068, 1194
BseMII CTCAG 3 cut(s) 553, 1304, 1424
BseRI GAGGAG 7 cut(s) 53, 73, 299, 764, 845, 848, 869
BseYI CCCAGC 2 cut(s) 40, 174
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 3 cut(s) 89, 381, 546
BshFI GGCC 2 cut(s) 682, 1103
BshNI GGYRCC 2 cut(s) 454, 1004
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 4 cut(s) 204, 439, 512, 770
BslFI GGGAC 2 cut(s) 154, 773
BslI CCNNNNNNNGG 2 cut(s) 769, 776
BsmAI GTCTC 2 cut(s) 145, 812
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 154, 773
BsnI GGCC 2 cut(s) 682, 1103
BsoBI CYCGRG 1 cut(s) 603
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 97, 161, 477
Bsp1720I GCTNAGC 1 cut(s) 539
BspANI GGCC 2 cut(s) 682, 1103
BspCNI CTCAG 3 cut(s) 552, 1303, 1423
BspFNI CGCG 3 cut(s) 89, 381, 546
BspLI GGNNCC 6 cut(s) 287, 402, 456, 761, 891, 1006
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 1 cut(s) 156
BspT104I TTCGAA 1 cut(s) 417
BspT107I GGYRCC 2 cut(s) 454, 1004
BspTI CTTAAG 1 cut(s) 1277
BsrBI CCGCTC 2 cut(s) 189, 1184
BsrDI GCAATG 4 cut(s) 449, 522, 1068, 1194
BsrFI RCCGGY 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 4 cut(s) 423, 544, 1167, 1211
BssMI GATC 3 cut(s) 97, 161, 477
BssNI GRCGYC 2 cut(s) 384, 455
BssT1I CCWWGG 1 cut(s) 1167
Bst2UI CCWGG 2 cut(s) 425, 558
Bst4CI ACNGT 2 cut(s) 1037, 1117
Bst6I CTCTTC 1 cut(s) 954
BstACI GRCGYC 2 cut(s) 384, 455
BstAFI CTTAAG 1 cut(s) 1277
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 4 cut(s) 343, 600, 1012, 1016
BstDEI CTNAG 4 cut(s) 539, 1085, 1290, 1410
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 5 cut(s) 144, 327, 333, 658, 1126
BstFNI CGCG 3 cut(s) 89, 381, 546
BstH2I RGCGCY 2 cut(s) 458, 1277
BstHHI GCGC 3 cut(s) 91, 457, 1276
BstKTI GATC 3 cut(s) 100, 164, 480
BstMAI GTCTC 2 cut(s) 145, 812
BstMBI GATC 3 cut(s) 97, 161, 477
BstMWI GCNNNNNNNGC 3 cut(s) 186, 608, 688
BstNI CCWGG 2 cut(s) 425, 558
BstSCI CCNGG 3 cut(s) 423, 510, 556
BstSFI CTRYAG 1 cut(s) 1330
BstUI CGCG 3 cut(s) 89, 381, 546
BsuI GTATCC 1 cut(s) 1399
BsuRI GGCC 2 cut(s) 682, 1103
BtgI CCRYGG 1 cut(s) 544
BtsCI GGATG 5 cut(s) 144, 327, 333, 658, 1126
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 4 cut(s) 343, 600, 1012, 1016
CfoI GCGC 3 cut(s) 91, 457, 1276
Cfr10I RCCGGY 1 cut(s) 438
Cfr13I GGNCC 3 cut(s) 285, 760, 1101
Cfr42I CCGCGG 1 cut(s) 547
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 1033
CviQI GTAC 1 cut(s) 1033
DdeI CTNAG 4 cut(s) 539, 1085, 1290, 1410
DinI GGCGCC 1 cut(s) 456
DpnI GATC 3 cut(s) 99, 163, 479
DpnII GATC 3 cut(s) 97, 161, 477
DraI TTTAAA 1 cut(s) 1312
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Eco130I CCWWGG 1 cut(s) 1167
Eco47I GGWCC 2 cut(s) 285, 760
Eco47III AGCGCT 1 cut(s) 1275
Eco57I CTGAAG 2 cut(s) 978, 1268
Eco88I CYCGRG 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 423, 556
EcoT14I CCWWGG 1 cut(s) 1167
EgeI GGCGCC 1 cut(s) 456
EheI GGCGCC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 1167
Esp3I CGTCTC 1 cut(s) 145
FalI AAGNNNNNCTT 2 cut(s) 1260, 1292
FaqI GGGAC 2 cut(s) 154, 773
FauI CCCGC 3 cut(s) 179, 440, 610
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 5 cut(s) 6, 544, 547, 1008, 1185
FokI GGATG 5 cut(s) 131, 314, 320, 665, 1133
Fsp4HI GCNGC 5 cut(s) 6, 544, 547, 1008, 1185
FspBI CTAG 2 cut(s) 678, 1067
GlaI GCGC 3 cut(s) 90, 456, 1275
GluI GCNGC 5 cut(s) 6, 544, 547, 1008, 1185
GsaI CCCAGC 2 cut(s) 44, 178
HaeII RGCGCY 2 cut(s) 458, 1277
HaeIII GGCC 2 cut(s) 682, 1103
HapII CCGG 4 cut(s) 204, 439, 512, 770
HgaI GACGC 1 cut(s) 392
HhaI GCGC 3 cut(s) 91, 457, 1276
Hin1I GRCGYC 2 cut(s) 384, 455
Hin6I GCGC 3 cut(s) 89, 455, 1274
HinP1I GCGC 3 cut(s) 89, 455, 1274
HindIII AAGCTT 1 cut(s) 1280
HinfI GANTC 2 cut(s) 494, 583
HpaII CCGG 4 cut(s) 204, 439, 512, 770
HphI GGTGA 2 cut(s) 202, 1157
Hpy188I TCNGA 9 cut(s) 97, 161, 400, 482, 582, 647, 1212, 1293, 1324
Hpy188III TCNNGA 2 cut(s) 430, 725
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 3 cut(s) 210, 325, 1355
HpyCH4III ACNGT 2 cut(s) 1037, 1117
HpyCH4V TGCA 7 cut(s) 409, 520, 573, 598, 691, 933, 1337
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 608, 688
HpyF3I CTNAG 4 cut(s) 539, 1085, 1290, 1410
Hsp92I GRCGYC 2 cut(s) 384, 455
HspAI GCGC 3 cut(s) 89, 455, 1274
KasI GGCGCC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 477
KspI CCGCGG 1 cut(s) 547
Kzo9I GATC 3 cut(s) 97, 161, 477
LmnI GCTCC 2 cut(s) 400, 889
LweI GCATC 3 cut(s) 558, 886, 1027
MaeI CTAG 2 cut(s) 678, 1067
MaeIII GTNAC 1 cut(s) 800
MalI GATC 3 cut(s) 99, 163, 479
MbiI CCGCTC 2 cut(s) 189, 1184
MboI GATC 3 cut(s) 97, 161, 477
MboII GAAGA 5 cut(s) 10, 268, 878, 971, 1280
MluCI AATT 4 cut(s) 704, 1050, 1318, 1382
Mly113I GGCGCC 1 cut(s) 455
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 3 cut(s) 919, 1245, 1383
MseI TTAA 3 cut(s) 1112, 1278, 1311
MslI CAYNNNNRTG 1 cut(s) 812
MspA1I CMGCKG 2 cut(s) 174, 546
MspCI CTTAAG 1 cut(s) 1277
MspI CCGG 4 cut(s) 204, 439, 512, 770
MspR9I CCNGG 3 cut(s) 425, 512, 558
MssI GTTTAAAC 1 cut(s) 1312
MvaI CCWGG 2 cut(s) 425, 558
MvnI CGCG 3 cut(s) 89, 381, 546
MwoI GCNNNNNNNGC 3 cut(s) 186, 608, 688
NarI GGCGCC 1 cut(s) 455
NciI CCSGG 1 cut(s) 512
NdeII GATC 3 cut(s) 97, 161, 477
NlaIV GGNNCC 6 cut(s) 287, 402, 456, 761, 891, 1006
NmeAIII GCCGAG 1 cut(s) 1129
NspV TTCGAA 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 603
PaqCI CACCTGC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 583
PkrI GCNGC 5 cut(s) 7, 545, 548, 1009, 1186
PleI GAGTC 1 cut(s) 502
PluTI GGCGCC 1 cut(s) 458
PmeI GTTTAAAC 1 cut(s) 1312
PpsI GAGTC 1 cut(s) 502
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 423, 556
PspFI CCCAGC 2 cut(s) 40, 174
PspGI CCWGG 2 cut(s) 423, 556
PspN4I GGNNCC 6 cut(s) 287, 402, 456, 761, 891, 1006
PspPI GGNCC 3 cut(s) 285, 760, 1101
PspXI VCTCGAGB 1 cut(s) 603
RsaI GTAC 1 cut(s) 1034
RsaNI GTAC 1 cut(s) 1033
RseI CAYNNNNRTG 1 cut(s) 812
SacII CCGCGG 1 cut(s) 547
SaqAI TTAA 3 cut(s) 1112, 1278, 1311
SatI GCNGC 5 cut(s) 6, 544, 547, 1008, 1185
Sau3AI GATC 3 cut(s) 97, 161, 477
Sau96I GGNCC 3 cut(s) 285, 760, 1101
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 3 cut(s) 425, 512, 558
SfaNI GCATC 3 cut(s) 558, 886, 1027
SfcI CTRYAG 1 cut(s) 1330
SfoI GGCGCC 1 cut(s) 456
Sfr274I CTCGAG 1 cut(s) 603
Sfr303I CCGCGG 1 cut(s) 547
SfuI TTCGAA 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 547
SinI GGWCC 2 cut(s) 285, 760
SlaI CTCGAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 2 cut(s) 603, 1277
SmoI CTYRAG 2 cut(s) 603, 1277
Sse9I AATT 4 cut(s) 704, 1050, 1318, 1382
SspDI GGCGCC 1 cut(s) 454
SspMI CTAG 2 cut(s) 678, 1067
StyD4I CCNGG 3 cut(s) 423, 510, 556
StyI CCWWGG 1 cut(s) 1167
TaaI ACNGT 2 cut(s) 1037, 1117
TaqI TCGA 3 cut(s) 417, 507, 604
TasI AATT 4 cut(s) 704, 1050, 1318, 1382
TauI GCSGC 5 cut(s) 8, 546, 549, 1010, 1187
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 3 cut(s) 1112, 1278, 1311
Tru9I TTAA 3 cut(s) 1112, 1278, 1311
TspDTI ATGAA 5 cut(s) 710, 717, 1071, 1370, 1410
Vha464I CTTAAG 1 cut(s) 1277
VpaK11BI GGWCC 2 cut(s) 285, 760
XapI RAATTY 1 cut(s) 1318
XhoI CTCGAG 1 cut(s) 603
XspI CTAG 2 cut(s) 678, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.