Prupe.8G107700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
13840536 .. 13842011
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G107700.1

Sequence Viewer

Length: 1476 bp
ATGGCTTTTCAAATCCTCAGACGCAATCTTTTCCCAGCAACAAAACCCAGGCCCCCCTCCGTCTCCCACTTCTCCTCCTCCCCACCGTCAGATCAGACTCCATCTCAGACCAACCCTCTAATCTCAGACGTCGTCTCCATCATAACCAACCTCCGCTCCAAGACTCGCTGGAGCTACCTCCGCTCCCTCTACCCACACGGCTTCGACTCAAATGACTTTTCCCAGATTGCCCTCCACATAAAAAACAATCCCCGTCTTGCCCTCCGCTTCTTCCTCTGGACCCAGCACAAGTCCCTCTGCAACCACAACCTCCAGTCCCACTCCACCATCATCCACATCCTCGCTCGGGGCCGCCTGAGGTCACAAGCTTACGACCTTATTCGAACCGCCATTCGGGTCTCTGAGTCTGAGAGTATTGGTAGCCATGAATCTAAGCCTTTGAAAGTGTTTGAGAGTCTCGTGAAGACCTACAGGCAATGTGACTCGGCACCTTTTGTGTTTGATTTGCTGATCAAAGCTTGTTTGGAGTCAAAGAAAATCGACCCCGCAATCCAGATAGTGAGAATGTTGTTATCTCGCGGGATTAGCCCGGGATTGAGCACCTGCAATGCTTTGATTCGGCTTCTTTCGCAGCGTCGAGGTGCGTATGCTGGTTACGAGATTTATAGGGAGATATTTGGATTGGATTGTGAAGTTTTAGAGCATAATGTGAAAAGGGTTGCTAGGATTAGCCCCAATGTGGAAACTTTCAATGCATTGATGTTGGGTTTTTATCGGGATGGTCTGGTGGAGAAGGTGAAGGAGATTTGGGACCAAATGGCGGATTTGAATTGCTGTCCTAATGGTTATAGTTATAGTATTTTGATGGCAGCTTATTGTGAGCAAGAGAAAATGAATGAAGCAGAGGAGGTGTGGGAAGAAATGAGAGCTAAGGGCCTGGAACCTGATGTTGTTGCTTACAACACTATGATTGGTGGGTTTTGCAGAGTTGGAGAGATTGAAATGGCTGAAGAGTTTTCCAAAGAAATGGGGTTGAGTGGAATAGAGAGTACCGATGCCACTTATGAGCATCTTATTACTGGGTACTGTAAAATGGGAAACCTTGATGCAGCAATGCTCTTGTATAAGGATATGCTTAGGAAAGATTTTAGGCCTGAGGGTTCAACAATGGATTCGTTGATTCGAGGGCTGTGCGATGAAAGTCGGGTTTTAGAAGCTTTCGAGGTTATGAGAGGTGCAGTGGTACATTTTGGTTTTTGTCCAACAGAGAAGAGTTATGAGTTTCTGATAAGAGGGTTGTGTGAGGAGGAGAAGTTGGAAGAAGCACTTAAGCTTCAGGCTGAGATGGTGGGAAAAGGGTTTAAACCCAATTCTGAGATCTATAGTGCATTTATCAGTGGCTATATGAAACAAGGAAACAAGGAAGTAGCAGAAAGGTTAAGGAATGAAATGTTGGATACTCGGAATGGGAATTAG

Protein Analysis

492

Amino Acids

55.86

Weight (kDa)

6.45

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15980
fragaria_vesca FvH4_2g02001 FvH4_2g02001 FvH4_2g02001
malus_domestica MD10G1084800.v1.1
prunus_persica Prupe.8G107700_v2.0.a1
pyrus_communis pycom10g06650
rosa_chinensis RchiOBHm_Chr6g0245191
rosa_laevigata RLG00000015317
rosa_multiflora Rmu_sc0027529.1_g000005 Rmu_sc0038123.1_g000001
rosa_roxburghii Rroxscaffold_7G00215370
rosa_rugosa Rorug05G0512900
rosa_samantha Rh6AG027800 Rh6BG023900
rosa_wichuraiana Rw6G002350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 611
AatII GACGTC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 487
AccBSI CCGCTC 2 cut(s) 156, 183
AccII CGCG 1 cut(s) 579
AciI CCGC 8 cut(s) 154, 181, 265, 352, 387, 546, 579, 821
AcuI CTGAAG 2 cut(s) 1029, 1319
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 3 cut(s) 1051, 1085, 1245
AfiI CCNNNNNNNGG 4 cut(s) 346, 393, 739, 820
AflII CTTAAG 1 cut(s) 1328
AgsI TTSAA 6 cut(s) 11, 442, 751, 829, 1001, 1164
AjnI CCWGG 2 cut(s) 47, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 1436, 1468
AluBI AGCT 7 cut(s) 174, 368, 518, 872, 929, 1217, 1333
AluI AGCT 7 cut(s) 174, 368, 518, 872, 929, 1217, 1333
Alw21I GWGCWC 1 cut(s) 602
Alw26I GTCTC 4 cut(s) 67, 139, 403, 461
Ama87I CYCGRG 2 cut(s) 345, 589
AoxI GGCC 4 cut(s) 50, 349, 934, 1151
ApeKI GCWGC 3 cut(s) 631, 869, 1109
AspS9I GGNCC 5 cut(s) 51, 279, 349, 811, 934
AsuC2I CCSGG 2 cut(s) 590, 591
AsuHPI GGTGA 1 cut(s) 808
AsuII TTCGAA 1 cut(s) 382
AvaI CYCGRG 2 cut(s) 345, 589
AvaII GGWCC 2 cut(s) 279, 811
AxyI CCTNAGG 2 cut(s) 356, 1155
BanI GGYRCC 1 cut(s) 487
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 602
BbvI GCAGC 3 cut(s) 643, 881, 1121
BccI CCATC 6 cut(s) 109, 146, 335, 773, 859, 1339
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 1173, 1207
BciT130I CCWGG 2 cut(s) 49, 938
BciVI GTATCC 1 cut(s) 1450
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 2 cut(s) 590, 591
BcoDI GTCTC 4 cut(s) 67, 139, 403, 461
BfaI CTAG 1 cut(s) 723
BfmI CTRYAG 2 cut(s) 469, 1381
BfrI CTTAAG 1 cut(s) 1328
BfuAI ACCTGC 1 cut(s) 611
BfuI GTATCC 1 cut(s) 1450
BglII AGATCT 1 cut(s) 1377
BisI GCNGC 4 cut(s) 352, 632, 870, 1110
BlsI GCNGC 4 cut(s) 353, 633, 871, 1111
Bme1390I CCNGG 4 cut(s) 49, 590, 591, 938
Bme18I GGWCC 2 cut(s) 279, 811
BmeT110I CYCGRG 2 cut(s) 345, 589
BmgT120I GGNCC 5 cut(s) 51, 279, 349, 811, 934
BmiI GGNNCC 6 cut(s) 53, 281, 350, 489, 812, 942
BmrFI CCNGG 4 cut(s) 49, 590, 591, 938
BmrI ACTGGG 1 cut(s) 1089
BmsI GCATC 3 cut(s) 1045, 1078, 1096
BmuI ACTGGG 1 cut(s) 1089
BpiI GAAGAC 1 cut(s) 470
BpmI CTGGAG 2 cut(s) 190, 296
Bpu10I CCTNAGC 2 cut(s) 930, 1136
Bpu14I TTCGAA 1 cut(s) 382
BpuMI CCSGG 2 cut(s) 590, 591
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 47, 589
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 393, 739, 820
Bse1I ACTGG 2 cut(s) 313, 1084
Bse21I CCTNAGG 2 cut(s) 356, 1155
Bse3DI GCAATG 3 cut(s) 482, 613, 1119
BseBI CCWGG 2 cut(s) 49, 938
BseDI CCNNGG 2 cut(s) 47, 589
BseGI GGATG 3 cut(s) 330, 336, 784
BseLI CCNNNNNNNGG 4 cut(s) 346, 393, 739, 820
BseMI GCAATG 3 cut(s) 482, 613, 1119
BseMII CTCAG 9 cut(s) 31, 119, 138, 347, 393, 399, 1146, 1332, 1365
BseNI ACTGG 2 cut(s) 313, 1084
BseRI GAGGAG 5 cut(s) 64, 67, 920, 1319, 1322
BseXI GCAGC 3 cut(s) 643, 881, 1121
BseYI CCCAGC 2 cut(s) 34, 282
BsgI GTGCAG 1 cut(s) 1257
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 4 cut(s) 52, 351, 936, 1153
BshNI GGYRCC 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 602
BsiHKCI CYCGRG 2 cut(s) 345, 589
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 3 cut(s) 277, 301, 824
BslI CCNNNNNNNGG 4 cut(s) 346, 393, 739, 820
BsmAI GTCTC 4 cut(s) 67, 139, 403, 461
BsmBI CGTCTC 2 cut(s) 67, 139
BsmFI GGGAC 3 cut(s) 277, 301, 824
BsnI GGCC 4 cut(s) 52, 351, 936, 1153
Bso31I GGTCTC 1 cut(s) 403
BsoBI CYCGRG 2 cut(s) 345, 589
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 602
Bsp143I GATC 3 cut(s) 91, 510, 1377
BspACI CCGC 8 cut(s) 154, 181, 265, 352, 387, 546, 579, 821
BspANI GGCC 4 cut(s) 52, 351, 936, 1153
BspCNI CTCAG 9 cut(s) 30, 118, 137, 348, 394, 400, 1147, 1333, 1366
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 6 cut(s) 53, 281, 350, 489, 812, 942
BspMI ACCTGC 1 cut(s) 611
BspT104I TTCGAA 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 487
BspTI CTTAAG 1 cut(s) 1328
BspTNI GGTCTC 1 cut(s) 403
BsrBI CCGCTC 2 cut(s) 156, 183
BsrDI GCAATG 3 cut(s) 482, 613, 1119
BsrI ACTGG 2 cut(s) 313, 1084
BssECI CCNNGG 2 cut(s) 47, 589
BssMI GATC 3 cut(s) 91, 510, 1377
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 49, 938
Bst4CI ACNGT 2 cut(s) 87, 1088
Bst6I CTCTTC 2 cut(s) 1005, 1265
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 1328
BstBI TTCGAA 1 cut(s) 382
BstF5I GGATG 3 cut(s) 330, 336, 784
BstFNI CGCG 1 cut(s) 579
BstKTI GATC 3 cut(s) 94, 513, 1380
BstMAI GTCTC 4 cut(s) 67, 139, 403, 461
BstMBI GATC 3 cut(s) 91, 510, 1377
BstMWI GCNNNNNNNGC 3 cut(s) 180, 585, 628
BstNI CCWGG 2 cut(s) 49, 938
BstSCI CCNGG 4 cut(s) 47, 588, 589, 936
BstSFI CTRYAG 2 cut(s) 469, 1381
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 3 cut(s) 643, 881, 1121
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 1377
BstXI CCANNNNNNTGG 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1377
Bsu36I CCTNAGG 2 cut(s) 356, 1155
BsuI GTATCC 1 cut(s) 1450
BsuRI GGCC 4 cut(s) 52, 351, 936, 1153
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 3 cut(s) 330, 336, 784
BtsI GCAGTG 1 cut(s) 1245
BtsIMutI CAGTG 2 cut(s) 1245, 1402
BveI ACCTGC 1 cut(s) 611
Cfr13I GGNCC 5 cut(s) 51, 279, 349, 811, 934
Cfr9I CCCGGG 1 cut(s) 589
CseI GACGC 2 cut(s) 30, 623
Csp6I GTAC 3 cut(s) 1050, 1084, 1244
CviAII CATG 1 cut(s) 425
CviQI GTAC 3 cut(s) 1050, 1084, 1244
DpnI GATC 3 cut(s) 93, 512, 1379
DpnII GATC 3 cut(s) 91, 510, 1377
DraI TTTAAA 1 cut(s) 1363
Eam1104I CTCTTC 2 cut(s) 1005, 1265
EarI CTCTTC 2 cut(s) 1005, 1265
EciI GGCGGA 1 cut(s) 836
Eco147I AGGCCT 1 cut(s) 1153
Eco31I GGTCTC 1 cut(s) 403
Eco47I GGWCC 2 cut(s) 279, 811
Eco57I CTGAAG 2 cut(s) 1029, 1319
Eco81I CCTNAGG 2 cut(s) 356, 1155
Eco88I CYCGRG 2 cut(s) 345, 589
EcoO109I RGGNCCY 2 cut(s) 51, 934
EcoRII CCWGG 2 cut(s) 47, 936
EcoT22I ATGCAT 1 cut(s) 757
Esp3I CGTCTC 2 cut(s) 67, 139
FaeI CATG 1 cut(s) 428
FalI AAGNNNNNCTT 2 cut(s) 1311, 1343
FaqI GGGAC 3 cut(s) 277, 301, 824
FatI CATG 1 cut(s) 424
FauI CCCGC 2 cut(s) 553, 572
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 352, 632, 870, 1110
FokI GGATG 3 cut(s) 317, 323, 791
Fsp4HI GCNGC 4 cut(s) 352, 632, 870, 1110
FspBI CTAG 1 cut(s) 723
GluI GCNGC 4 cut(s) 352, 632, 870, 1110
GsaI CCCAGC 2 cut(s) 38, 286
GsuI CTGGAG 2 cut(s) 190, 296
HaeIII GGCC 4 cut(s) 52, 351, 936, 1153
HapII CCGG 1 cut(s) 590
HgaI GACGC 2 cut(s) 30, 623
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 428
HindIII AAGCTT 4 cut(s) 366, 516, 1215, 1331
HpaII CCGG 1 cut(s) 590
HphI GGTGA 1 cut(s) 808
Hpy188III TCNNGA 4 cut(s) 277, 460, 553, 776
Hpy99I CGWCG 2 cut(s) 134, 639
HpyAV CCTTC 2 cut(s) 787, 793
HpyCH4III ACNGT 2 cut(s) 87, 1088
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 7 cut(s) 300, 606, 755, 984, 1109, 1238, 1388
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 585, 628
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 3 cut(s) 91, 510, 1377
LmnI GCTCC 3 cut(s) 161, 171, 188
Lsp1109I GCAGC 3 cut(s) 643, 881, 1121
LweI GCATC 3 cut(s) 1045, 1078, 1096
MaeI CTAG 1 cut(s) 723
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 360, 479, 653
MalI GATC 3 cut(s) 93, 512, 1379
MbiI CCGCTC 2 cut(s) 156, 183
MboI GATC 3 cut(s) 91, 510, 1377
MboII GAAGA 6 cut(s) 262, 475, 929, 1022, 1282, 1331
MflI RGATCY 1 cut(s) 1377
MhlI GDGCHC 1 cut(s) 602
MluCI AATT 3 cut(s) 829, 1369, 1471
MlyI GAGTC 7 cut(s) 91, 157, 200, 413, 463, 476, 536
MmeI TCCRAC 4 cut(s) 970, 1286, 1296, 1434
Mph1103I ATGCAT 1 cut(s) 757
MseI TTAA 3 cut(s) 1329, 1362, 1439
MspCI CTTAAG 1 cut(s) 1328
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 4 cut(s) 49, 590, 591, 938
MssI GTTTAAAC 1 cut(s) 1363
MvaI CCWGG 2 cut(s) 49, 938
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 3 cut(s) 180, 585, 628
NciI CCSGG 2 cut(s) 590, 591
NdeII GATC 3 cut(s) 91, 510, 1377
NlaIII CATG 1 cut(s) 428
NlaIV GGNNCC 6 cut(s) 53, 281, 350, 489, 812, 942
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 2 cut(s) 360, 479
NsiI ATGCAT 1 cut(s) 757
NspV TTCGAA 1 cut(s) 382
PaqCI CACCTGC 1 cut(s) 611
PceI AGGCCT 1 cut(s) 1153
PfeI GAWTC 4 cut(s) 428, 616, 1172, 1180
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 4 cut(s) 353, 633, 871, 1111
PleI GAGTC 7 cut(s) 91, 157, 200, 412, 462, 476, 535
PmeI GTTTAAAC 1 cut(s) 1363
PpsI GAGTC 7 cut(s) 91, 157, 200, 412, 462, 476, 535
Psp6I CCWGG 2 cut(s) 47, 936
PspFI CCCAGC 2 cut(s) 34, 282
PspGI CCWGG 2 cut(s) 47, 936
PspN4I GGNNCC 6 cut(s) 53, 281, 350, 489, 812, 942
PspPI GGNCC 5 cut(s) 51, 279, 349, 811, 934
PsuI RGATCY 1 cut(s) 1377
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 3 cut(s) 1051, 1085, 1245
RsaNI GTAC 3 cut(s) 1050, 1084, 1244
SaqAI TTAA 3 cut(s) 1329, 1362, 1439
SatI GCNGC 4 cut(s) 352, 632, 870, 1110
Sau3AI GATC 3 cut(s) 91, 510, 1377
Sau96I GGNCC 5 cut(s) 51, 279, 349, 811, 934
SchI GAGTC 7 cut(s) 91, 157, 200, 413, 463, 476, 536
ScrFI CCNGG 4 cut(s) 49, 590, 591, 938
SduI GDGCHC 1 cut(s) 602
SfaNI GCATC 3 cut(s) 1045, 1078, 1096
SfcI CTRYAG 2 cut(s) 469, 1381
SfuI TTCGAA 1 cut(s) 382
SinI GGWCC 2 cut(s) 279, 811
SmaI CCCGGG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 1328
SmoI CTYRAG 1 cut(s) 1328
Sse9I AATT 3 cut(s) 829, 1369, 1471
SseBI AGGCCT 1 cut(s) 1153
SsiI CCGC 8 cut(s) 154, 181, 265, 352, 387, 546, 579, 821
SspMI CTAG 1 cut(s) 723
StuI AGGCCT 1 cut(s) 1153
StyD4I CCNGG 4 cut(s) 47, 588, 589, 936
TaaI ACNGT 2 cut(s) 87, 1088
TaiI ACGT 1 cut(s) 132
TaqI TCGA 6 cut(s) 204, 382, 540, 637, 1183, 1221
TasI AATT 3 cut(s) 829, 1369, 1471
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 4 cut(s) 428, 616, 1172, 1180
Tru1I TTAA 3 cut(s) 1329, 1362, 1439
Tru9I TTAA 3 cut(s) 1329, 1362, 1439
TscAI CASTG 2 cut(s) 1245, 1402
TseFI GTSAC 2 cut(s) 360, 479
TseI GCWGC 3 cut(s) 631, 869, 1109
Tsp45I GTSAC 2 cut(s) 360, 479
TspDTI ATGAA 6 cut(s) 441, 908, 912, 1212, 1421, 1461
TspGWI ACGGA 1 cut(s) 49
TspMI CCCGGG 1 cut(s) 589
TspRI CASTG 2 cut(s) 1245, 1402
Tth111I GACNNNGTC 1 cut(s) 131
Vha464I CTTAAG 1 cut(s) 1328
VpaK11BI GGWCC 2 cut(s) 279, 811
XmaI CCCGGG 1 cut(s) 589
XspI CTAG 1 cut(s) 723
ZraI GACGTC 1 cut(s) 130
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.