pycom10g06650

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
7805988 .. 7807454
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g06650.1

Sequence Viewer

Length: 1467 bp
ATGGCTTTTCAAATCCTCAAACGCACTCTTTCTTCAGCAAGAAATCCCAAACCCCTCTTCGTCCCCAGCTTCTCCTCCTCTTCTCCACCGTCCGATCAAGCTTCATCACAATCCAGTCTCCTAATCTCCGACGTCGTTTCCATCCTAACCCACCAGCGCTGCAAATCCCGATGGAGCTACCTTCACTCTCTCTACCCCAACGGCTTCAACCCAGATGACTTTTCCAAGATTGCCCTCCACATCAAAAACAATACCCGTCTTGTCCTCGCCTTCTTCCACTGGACCCAACGCAAGTCCCTCTGCAACCACAACCTCCTCTCTCACTCCACCATAATCCACATCCTTGCCCGAGACCGGCTCAGGTCCCAAGCTTATGACCTTATTCGAGCCACCATTCGGGTATCCGACGAAGCTGAGCCGTTGAAAGTGTTTGAGAGTCTTGTCAAGACCTATAGGCAATGTGGGTCGGCGCCCTTTGTGTTTGATTTGCTGGTCAAAGCTTGCTTGGAGTCGAAGAAAATCGACCCATCAATCCAGATTGTGAGAATGTTGCTGTCTCGTGGGATCAGCCCCGGATTGAGCATCTGCAATGATCTGATTCGGCTTCTTTCGCAGCGTCGAGGTGCGTATGCTGGTTATGAGATTTATAGGGAGATTTTTGGATTGGATTGTGATGTTTTAGAGAAAAAAGTGAAAAGGGTTGCTAGAATCAGCCCGAGTGTTCAAACTTTCAATGCATTGATGTTGGGTTTTTATCAGGATGGTGTGGTGGAGAAGGTGAAGGAGATTTGGGATCAAATGGCGGGTTTGAATTGCTGTCCAAATGGTTTTAGTTATAGTATTTTGATGGCTGCTTATTGTGAGCAAGATAGAATGAGTGAAGCAGAGGAGTTGTGGGAAGAAATGAGAGCTAAGAGTGTGGTGCCTGATGTTGTTGCTTATAACACTATGATTGGCGGGTTTTGCAAAATCGGAGAAATTGAAATGGCTGAAGATTTTTTCAAGGAAATGGGATTGAGTGGAATAGAGAGTACTTGTGCTACGTATGATCATCTTATTACTGGGTACTGTAAAACAGGAAACATTGATTCTGCTACGCTCTTATATAAGGACATGCTTAGGAAAGATTTCAGGCCCGAGTGTTCAACAATGGATGCATTGATTCAGGGGCTTTGTGATGAGAGTAGGGTTTTAGAAGCATTGAATGTTATGAAAGGTGCAACGGTAGATTTTGGTTTTCGTTCGACCGAGAAGAGTTATGAGAATCTGATAAGAGGGTTGTGTGAGGATGAGAACTTGGAAGAAGCGCTTAAGCTTCAGGCCGAGATGGTGGGAAAAGGGTTTAAACCGAATTCTGAGGTCTATAATGCGTTCATTAGTGGGTATATGAAACAAGGGAACAGGGAAGTAGCAGAAAGGTTGAAGATAGAAATGTTGGATGCTCAGATGCGTGGGAATGGGGATTAG

Protein Analysis

489

Amino Acids

55.11

Weight (kDa)

6.49

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 239 - 287 1.3e-09 PPR repeat family
PPR_1 PF12854 271 - 303 1e-07 PPR repeat
PPR_2 PF13041 277 - 312 1e-07 PPR repeat family
PPR PF01535 277 - 305 2.6e-06 PPR repeat
PPR_1 PF12854 306 - 337 2.2e-10 PPR repeat
PPR_2 PF13041 309 - 353 3.2e-12 PPR repeat family
PPR PF01535 312 - 342 3e-08 PPR repeat
PPR_1 PF12854 341 - 372 8.1e-06 PPR repeat
PPR_2 PF13041 347 - 393 2.7e-10 PPR repeat family
PPR_2 PF13041 419 - 452 3.4e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15980
fragaria_vesca FvH4_2g02001 FvH4_2g02001 FvH4_2g02001
malus_domestica MD10G1084800.v1.1
prunus_persica Prupe.8G107700_v2.0.a1
pyrus_communis pycom10g06650
rosa_chinensis RchiOBHm_Chr6g0245191
rosa_laevigata RLG00000015317
rosa_multiflora Rmu_sc0027529.1_g000005 Rmu_sc0038123.1_g000001
rosa_roxburghii Rroxscaffold_7G00215370
rosa_rugosa Rorug05G0512900
rosa_samantha Rh6AG027800 Rh6BG023900
rosa_wichuraiana Rw6G002350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 2 cut(s) 469, 922
AciI CCGC 2 cut(s) 803, 957
AclWI GGATC 2 cut(s) 572, 801
AcsI RAATTY 1 cut(s) 1351
AcuI CTGAAG 3 cut(s) 18, 1011, 1301
AcyI GRCGYC 2 cut(s) 132, 470
AfaI GTAC 2 cut(s) 1033, 1067
AfeI AGCGCT 2 cut(s) 158, 1308
AfiI CCNNNNNNNGG 2 cut(s) 354, 396
AflII CTTAAG 1 cut(s) 1310
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 8 cut(s) 69, 101, 177, 371, 413, 500, 911, 1315
AluI AGCT 8 cut(s) 69, 101, 177, 371, 413, 500, 911, 1315
Alw26I GTCTC 3 cut(s) 122, 345, 561
AlwI GGATC 2 cut(s) 572, 801
Ama87I CYCGRG 3 cut(s) 348, 715, 1136
Aor51HI AGCGCT 2 cut(s) 158, 1308
AoxI GGCC 2 cut(s) 1133, 1320
ApeKI GCWGC 3 cut(s) 159, 613, 851
ApoI RAATTY 1 cut(s) 1351
Asp700I GAANNNNTTC 1 cut(s) 1127
AspLEI GCGC 3 cut(s) 159, 472, 1309
AspS9I GGNCC 3 cut(s) 282, 363, 1134
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 1 cut(s) 790
AvaI CYCGRG 3 cut(s) 348, 715, 1136
AvaII GGWCC 2 cut(s) 282, 363
BanI GGYRCC 2 cut(s) 469, 922
BauI CACGAG 1 cut(s) 558
BbvI GCAGC 3 cut(s) 146, 625, 838
BccI CCATC 6 cut(s) 149, 165, 535, 755, 841, 1321
BceAI ACGGC 2 cut(s) 217, 403
BciVI GTATCC 1 cut(s) 412
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 3 cut(s) 122, 345, 561
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 451
BfoI RGCGCY 3 cut(s) 160, 473, 1310
BfrI CTTAAG 1 cut(s) 1310
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 3 cut(s) 160, 614, 852
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 3 cut(s) 161, 615, 853
BmcAI AGTACT 1 cut(s) 1033
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 2 cut(s) 282, 363
BmeT110I CYCGRG 3 cut(s) 348, 715, 1136
BmgT120I GGNCC 3 cut(s) 282, 363, 1134
BmiI GGNNCC 4 cut(s) 284, 365, 471, 924
BmrFI CCNGG 1 cut(s) 573
BmrI ACTGGG 1 cut(s) 1071
BmsI GCATC 4 cut(s) 591, 1144, 1429, 1437
BmuI ACTGGG 1 cut(s) 1071
BplI GAGNNNNNCTC 2 cut(s) 342, 374
Bpu10I CCTNAGC 2 cut(s) 359, 1118
Bpu1102I GCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 573
BsaAI YACGTR 1 cut(s) 1044
BsaHI GRCGYC 2 cut(s) 132, 470
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 571
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 396
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 3 cut(s) 114, 284, 1066
Bse3DI GCAATG 2 cut(s) 464, 595
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 6 cut(s) 141, 339, 766, 1159, 1294, 1444
BseLI CCNNNNNNNGG 2 cut(s) 354, 396
BseMI GCAATG 2 cut(s) 464, 595
BseMII CTCAG 4 cut(s) 373, 405, 1347, 1457
BseNI ACTGG 3 cut(s) 114, 284, 1066
BseRI GAGGAG 4 cut(s) 64, 67, 305, 902
BseXI GCAGC 3 cut(s) 146, 625, 838
BseYI CCCAGC 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 1248
BshFI GGCC 2 cut(s) 1135, 1322
BshNI GGYRCC 2 cut(s) 469, 922
BsiEI CGRYCG 1 cut(s) 1248
BsiHKCI CYCGRG 3 cut(s) 348, 715, 1136
BsiSI CCGG 2 cut(s) 355, 573
BslFI GGGAC 3 cut(s) 47, 280, 349
BslI CCNNNNNNNGG 2 cut(s) 354, 396
BsmAI GTCTC 3 cut(s) 122, 345, 561
BsmFI GGGAC 3 cut(s) 47, 280, 349
BsnI GGCC 2 cut(s) 1135, 1322
Bso31I GGTCTC 1 cut(s) 345
BsoBI CYCGRG 3 cut(s) 348, 715, 1136
Bsp143I GATC 5 cut(s) 94, 564, 592, 793, 1048
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 2 cut(s) 803, 957
BspANI GGCC 2 cut(s) 1135, 1322
BspCNI CTCAG 4 cut(s) 372, 406, 1348, 1456
BspLI GGNNCC 4 cut(s) 284, 365, 471, 924
BspPI GGATC 2 cut(s) 572, 801
BspT107I GGYRCC 2 cut(s) 469, 922
BspTI CTTAAG 1 cut(s) 1310
BspTNI GGTCTC 1 cut(s) 345
BsrDI GCAATG 2 cut(s) 464, 595
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 3 cut(s) 114, 284, 1066
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 5 cut(s) 94, 564, 592, 793, 1048
BssNI GRCGYC 2 cut(s) 132, 470
BssSI CACGAG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 90, 1070, 1225
Bst6I CTCTTC 3 cut(s) 62, 85, 1247
BstACI GRCGYC 2 cut(s) 132, 470
BstAFI CTTAAG 1 cut(s) 1310
BstBAI YACGTR 1 cut(s) 1044
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 6 cut(s) 359, 414, 912, 1118, 1356, 1443
BstF5I GGATG 6 cut(s) 141, 339, 766, 1159, 1294, 1444
BstH2I RGCGCY 3 cut(s) 160, 473, 1310
BstHHI GCGC 3 cut(s) 159, 472, 1309
BstKTI GATC 5 cut(s) 97, 567, 595, 796, 1051
BstMAI GTCTC 3 cut(s) 122, 345, 561
BstMBI GATC 5 cut(s) 94, 564, 592, 793, 1048
BstMCI CGRYCG 1 cut(s) 1248
BstMWI GCNNNNNNNGC 2 cut(s) 610, 963
BstNSI RCATGY 1 cut(s) 1117
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 451
BstSNI TACGTA 1 cut(s) 1044
BstV1I GCAGC 3 cut(s) 146, 625, 838
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 2 cut(s) 1135, 1322
BtsCI GGATG 6 cut(s) 141, 339, 766, 1159, 1294, 1444
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 502
CfoI GCGC 3 cut(s) 159, 472, 1309
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 282, 363, 1134
CseI GACGC 1 cut(s) 605
Csp6I GTAC 2 cut(s) 1032, 1066
CviAII CATG 1 cut(s) 1114
CviQI GTAC 2 cut(s) 1032, 1066
DdeI CTNAG 6 cut(s) 359, 414, 912, 1118, 1356, 1443
DinI GGCGCC 1 cut(s) 471
DpnI GATC 5 cut(s) 96, 566, 594, 795, 1050
DpnII GATC 5 cut(s) 94, 564, 592, 793, 1048
DraI TTTAAA 1 cut(s) 1345
Eam1104I CTCTTC 3 cut(s) 62, 85, 1247
EarI CTCTTC 3 cut(s) 62, 85, 1247
Eco105I TACGTA 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 282, 363
Eco47III AGCGCT 2 cut(s) 158, 1308
Eco57I CTGAAG 3 cut(s) 18, 1011, 1301
Eco88I CYCGRG 3 cut(s) 348, 715, 1136
EcoO109I RGGNCCY 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 1351
EcoT22I ATGCAT 2 cut(s) 739, 1159
EgeI GGCGCC 1 cut(s) 471
EheI GGCGCC 1 cut(s) 471
FaeI CATG 1 cut(s) 1117
FalI AAGNNNNNCTT 2 cut(s) 1293, 1325
FaqI GGGAC 3 cut(s) 47, 280, 349
FatI CATG 1 cut(s) 1113
FauI CCCGC 2 cut(s) 796, 950
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 3 cut(s) 160, 614, 852
FokI GGATG 6 cut(s) 128, 326, 773, 1166, 1301, 1451
Fsp4HI GCNGC 3 cut(s) 160, 614, 852
FspBI CTAG 1 cut(s) 705
GlaI GCGC 3 cut(s) 158, 471, 1308
GluI GCNGC 3 cut(s) 160, 614, 852
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 3 cut(s) 160, 473, 1310
HaeIII GGCC 2 cut(s) 1135, 1322
HapII CCGG 2 cut(s) 355, 573
HgaI GACGC 1 cut(s) 605
HhaI GCGC 3 cut(s) 159, 472, 1309
Hin1I GRCGYC 2 cut(s) 132, 470
Hin1II CATG 1 cut(s) 1117
Hin6I GCGC 3 cut(s) 157, 470, 1307
HinP1I GCGC 3 cut(s) 157, 470, 1307
HindIII AAGCTT 4 cut(s) 99, 369, 498, 1313
HinfI GANTC 7 cut(s) 436, 509, 598, 708, 1088, 1162, 1264
HpaII CCGG 2 cut(s) 355, 573
HphI GGTGA 1 cut(s) 790
Hpy188I TCNGA 8 cut(s) 94, 130, 406, 597, 974, 1269, 1357, 1446
Hpy188III TCNNGA 4 cut(s) 168, 445, 535, 758
Hpy99I CGWCG 4 cut(s) 134, 137, 410, 621
HpyAV CCTTC 4 cut(s) 191, 280, 769, 775
HpyCH4III ACNGT 3 cut(s) 90, 1070, 1225
HpyCH4IV ACGT 2 cut(s) 132, 1043
HpyCH4V TGCA 7 cut(s) 162, 303, 588, 737, 966, 1157, 1220
HpyF10VI GCNNNNNNNGC 2 cut(s) 610, 963
HpyF3I CTNAG 6 cut(s) 359, 414, 912, 1118, 1356, 1443
HpySE526I ACGT 2 cut(s) 132, 1043
Hsp92I GRCGYC 2 cut(s) 132, 470
Hsp92II CATG 1 cut(s) 1117
HspAI GCGC 3 cut(s) 157, 470, 1307
KasI GGCGCC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 5 cut(s) 94, 564, 592, 793, 1048
LmnI GCTCC 1 cut(s) 174
Lsp1109I GCAGC 3 cut(s) 146, 625, 838
LweI GCATC 4 cut(s) 591, 1144, 1429, 1437
MaeI CTAG 1 cut(s) 705
MaeII ACGT 2 cut(s) 132, 1043
MalI GATC 5 cut(s) 96, 566, 594, 795, 1050
MboI GATC 5 cut(s) 94, 564, 592, 793, 1048
MluCI AATT 3 cut(s) 811, 978, 1351
Mly113I GGCGCC 1 cut(s) 470
MlyI GAGTC 2 cut(s) 445, 518
MmeI TCCRAC 3 cut(s) 153, 429, 1416
Mph1103I ATGCAT 2 cut(s) 739, 1159
MroXI GAANNNNTTC 1 cut(s) 1127
MseI TTAA 2 cut(s) 1311, 1344
MspCI CTTAAG 1 cut(s) 1310
MspI CCGG 2 cut(s) 355, 573
MspR9I CCNGG 1 cut(s) 573
MssI GTTTAAAC 1 cut(s) 1345
MwoI GCNNNNNNNGC 2 cut(s) 610, 963
NarI GGCGCC 1 cut(s) 470
NciI CCSGG 1 cut(s) 573
NdeII GATC 5 cut(s) 94, 564, 592, 793, 1048
NlaIII CATG 1 cut(s) 1117
NlaIV GGNNCC 4 cut(s) 284, 365, 471, 924
NmeAIII GCCGAG 1 cut(s) 1348
NsiI ATGCAT 2 cut(s) 739, 1159
NspI RCATGY 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 5 cut(s) 598, 708, 1088, 1162, 1264
PkrI GCNGC 3 cut(s) 161, 615, 853
PleI GAGTC 2 cut(s) 444, 517
PluTI GGCGCC 1 cut(s) 473
PmeI GTTTAAAC 1 cut(s) 1345
PpsI GAGTC 2 cut(s) 444, 517
Ppu21I YACGTR 1 cut(s) 1044
PpuMI RGGWCCY 1 cut(s) 363
PsiI TTATAA 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 4 cut(s) 284, 365, 471, 924
PspPI GGNCC 3 cut(s) 282, 363, 1134
PspPPI RGGWCCY 1 cut(s) 363
RsaI GTAC 2 cut(s) 1033, 1067
RsaNI GTAC 2 cut(s) 1032, 1066
SaqAI TTAA 2 cut(s) 1311, 1344
SatI GCNGC 3 cut(s) 160, 614, 852
Sau3AI GATC 5 cut(s) 94, 564, 592, 793, 1048
Sau96I GGNCC 3 cut(s) 282, 363, 1134
ScaI AGTACT 1 cut(s) 1033
SchI GAGTC 2 cut(s) 445, 518
ScrFI CCNGG 1 cut(s) 573
SfaNI GCATC 4 cut(s) 591, 1144, 1429, 1437
SfcI CTRYAG 1 cut(s) 451
SfoI GGCGCC 1 cut(s) 471
SinI GGWCC 2 cut(s) 282, 363
SmlI CTYRAG 1 cut(s) 1310
SmoI CTYRAG 1 cut(s) 1310
SnaBI TACGTA 1 cut(s) 1044
Sse9I AATT 3 cut(s) 811, 978, 1351
SsiI CCGC 2 cut(s) 803, 957
SspDI GGCGCC 1 cut(s) 469
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 3 cut(s) 90, 1070, 1225
TaiI ACGT 2 cut(s) 135, 1046
TaqI TCGA 5 cut(s) 385, 512, 522, 619, 1244
TaqII GACCGA 1 cut(s) 1262
TasI AATT 3 cut(s) 811, 978, 1351
TatI WGTACW 1 cut(s) 1031
TfiI GAWTC 5 cut(s) 598, 708, 1088, 1162, 1264
Tru1I TTAA 2 cut(s) 1311, 1344
Tru9I TTAA 2 cut(s) 1311, 1344
TscAI CASTG 1 cut(s) 284
TseI GCWGC 3 cut(s) 159, 613, 851
TspDTI ATGAA 4 cut(s) 93, 1226, 1363, 1403
TspRI CASTG 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 1310
VpaK11BI GGWCC 2 cut(s) 282, 363
XapI RAATTY 1 cut(s) 1351
XceI RCATGY 1 cut(s) 1117
XmnI GAANNNNTTC 1 cut(s) 1127
XspI CTAG 1 cut(s) 705
ZraI GACGTC 1 cut(s) 133
ZrmI AGTACT 1 cut(s) 1033
Zsp2I ATGCAT 2 cut(s) 739, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.