Rroxscaffold_7G00215370

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015238
Physical Location & Seq
Reverse (-)
65951709 .. 65953142
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215370.1

Sequence Viewer

Length: 1434 bp
ATGGCGGCAGTTCAAATCTTCAAAAGCTATCGTCTTTTCCAAGCTACAAAACCCAACCCCCTCCTCTGCCTCTCCCACTTCTCCTCCTCGCCGTCCGATCAAACCCCACCAGAACCCAACCCCCTAATCCCCTCCGTCGTCTCCATCCTAACCCACCTCCGATCCAAGTCCCGCTGGGGCTACCTCCGCACTCTCTACCCTTCCGGCTTCACCCCAACCGACTTTTCCCAAATCGCCCTCCACATAAAAAACAATCCCCACCTCGTCCTTCGCTTCTTCCAATGGACCCACAACCACAACCACAACCTCCTCTCCTTCTCCACCACCATCCACATCCTCGCTCGCTCCCGCCTCAAATCCCAAGCCTATTCCCTTATCCGCGGCGCCATTCGGGTTTCGGAGCCTCTGGCAGTGTTCGAAGCCCTGGTCAAGACTTACCGGCAATGCGGGTCGGCGCCGTTCGTGTTTGATTACCTGATCAGAGCTTGTTTGGAGTCCAAGAAAATCGACCCGGCAATGCAGATTGTTAGAATGTTGCTCAGTCGCGGCATCAATCCTGGTTTGAACACCTGCAACAGTCTGATTCGGTGCGTAATGCAGGCTCGAGGTGCGTGGGCGGGTTATGAGATTTACAGAGAGGTTTTCGGATTGGATGGTGGGGTTAGGGTTGCGAGAGCTAGGCCGAATGTGCAGACTTTCAATGAGTTGATGTTGGGGTTTTATCAGGACGGGGCGGTGGAGATGGTGAAGGAGATTTGGGACCAAATGCAGGAGTTTGGTTGCTGTGCTGATGTTTATGGTTACAGCATTTTGATGGAGACTTATTGTGAGGACGAGAAAATGAGTAAAGCGGAGGAGTTGTGGGAAGAAATGAGAGGTAAGGGTGTGGAGCCTGATGCTGTTGCTTATAACACTATGATTGGGGGGTTTTGCAGAGTTGGAGAGATTGAAATGGCTGAAGAGTTTTTCAAACAAATGGGATTGAGTGGGATAGAGAGCAGTGGTGCTGCTTGCGAGCATCTGGTTAGAGGGTACTGTAAAATAGGGAAAATTGATGAAGCAATGCTAGTGTATAAGGATATGCTTAGGAAGGATTTTAGGGCCGAGAGTTTAACTGTGGATGAGTTGATTAGAGGGCTTTGTGGTGAGAGCAGGGTTTTAGAAGCCTTGGAGGTCATGAGAGCTGCAATGGTAGATTATGGTTTTTGTCCAAGGGAGAAGTCGTACGAGTTTTTGATAGGAGGGTTGTGTGAGCAGGGGAAGTTGGAAGAAGCAGTTAAGCTTCAGGCTCAGATGGTTGGTAAAGGGTTTAAGCCGAACTCCGAAATCTATAGTGCATTTATTAGCGGCTATATGAAAGAAGGGAACACGGAAGTAGCAGAATTGTTGAGGAATGAAATGTTGGATACTCAGGTGTGTGGGATTGCGGATTAG

Protein Analysis

477

Amino Acids

53.78

Weight (kDa)

6.07

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 228 - 276 6.6e-09 PPR repeat family
PPR_3 PF13812 252 - 309 1.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 260 - 292 4.1e-07 PPR repeat
PPR_2 PF13041 264 - 312 6.4e-15 PPR repeat family
PPR_1 PF12854 294 - 326 2.6e-11 PPR repeat
PPR_2 PF13041 298 - 332 6.4e-09 PPR repeat family
PPR PF01535 301 - 331 5.3e-08 PPR repeat
PPR_2 PF13041 338 - 381 9.1e-07 PPR repeat family
PPR_2 PF13041 408 - 441 1.2e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15980
fragaria_vesca FvH4_2g02001 FvH4_2g02001 FvH4_2g02001
malus_domestica MD10G1084800.v1.1
prunus_persica Prupe.8G107700_v2.0.a1
pyrus_communis pycom10g06650
rosa_chinensis RchiOBHm_Chr6g0245191
rosa_laevigata RLG00000015317
rosa_multiflora Rmu_sc0027529.1_g000005 Rmu_sc0038123.1_g000001
rosa_roxburghii Rroxscaffold_7G00215370
rosa_rugosa Rorug05G0512900
rosa_samantha Rh6AG027800 Rh6BG023900
rosa_wichuraiana Rw6G002350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
AarI CACCTGC 1 cut(s) 578
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 2 cut(s) 383, 454
AccII CGCG 2 cut(s) 381, 546
AclWI GGATC 1 cut(s) 156
AcuI CTGAAG 2 cut(s) 978, 1268
AcyI GRCGYC 2 cut(s) 384, 455
AfaI GTAC 2 cut(s) 1034, 1226
AfiI CCNNNNNNNGG 1 cut(s) 769
AgsI TTSAA 6 cut(s) 14, 22, 565, 700, 950, 970
AjnI CCWGG 2 cut(s) 423, 556
AjuI GAANNNNNNNTTGG 4 cut(s) 208, 240, 1385, 1417
AluBI AGCT 6 cut(s) 27, 44, 485, 677, 1184, 1282
AluI AGCT 6 cut(s) 27, 44, 485, 677, 1184, 1282
Alw26I GTCTC 2 cut(s) 145, 812
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 2 cut(s) 680, 1101
ApeKI GCWGC 2 cut(s) 1007, 1184
ArsI GACNNNNNNTTYG 2 cut(s) 411, 443
AspLEI GCGC 2 cut(s) 386, 457
AspS9I GGNCC 3 cut(s) 285, 760, 1101
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 3 cut(s) 202, 757, 1157
AsuII TTCGAA 1 cut(s) 417
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 2 cut(s) 285, 760
BaeI ACNNNNGTAYC 2 cut(s) 1398, 1431
BanI GGYRCC 2 cut(s) 383, 454
BbvI GCAGC 2 cut(s) 994, 1171
BccI CCATC 6 cut(s) 152, 335, 647, 736, 808, 1288
BceAI ACGGC 2 cut(s) 76, 442
BciT130I CCWGG 2 cut(s) 425, 558
BciVI GTATCC 1 cut(s) 1399
BclI TGATCA 1 cut(s) 477
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 2 cut(s) 145, 812
BfaI CTAG 2 cut(s) 678, 1067
BfmI CTRYAG 1 cut(s) 1330
BfoI RGCGCY 2 cut(s) 387, 458
BfuAI ACCTGC 1 cut(s) 578
BfuI GTATCC 1 cut(s) 1399
BisI GCNGC 6 cut(s) 6, 382, 547, 1008, 1185, 1348
BlsI GCNGC 6 cut(s) 7, 383, 548, 1009, 1186, 1349
Bme1390I CCNGG 3 cut(s) 425, 512, 558
Bme18I GGWCC 2 cut(s) 285, 760
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 3 cut(s) 285, 760, 1101
BmiI GGNNCC 6 cut(s) 287, 385, 402, 456, 761, 891
BmrFI CCNGG 3 cut(s) 425, 512, 558
BmsI GCATC 3 cut(s) 558, 886, 1027
Bpu10I CCTNAGC 1 cut(s) 1085
Bpu14I TTCGAA 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 512
BsaHI GRCGYC 2 cut(s) 384, 455
BsaJI CCNNGG 4 cut(s) 379, 423, 1167, 1211
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 296, 326, 845, 875, 1208, 1238
Bsc4I CCNNNNNNNGG 1 cut(s) 769
Bse118I RCCGGY 1 cut(s) 438
Bse3DI GCAATG 4 cut(s) 449, 522, 1068, 1194
BseBI CCWGG 2 cut(s) 425, 558
BseDI CCNNGG 4 cut(s) 379, 423, 1167, 1211
BseGI GGATG 5 cut(s) 144, 327, 333, 658, 1126
BseLI CCNNNNNNNGG 1 cut(s) 769
BseMI GCAATG 4 cut(s) 449, 522, 1068, 1194
BseMII CTCAG 3 cut(s) 553, 1304, 1424
BseRI GAGGAG 5 cut(s) 53, 73, 76, 299, 869
BseXI GCAGC 2 cut(s) 994, 1171
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 2 cut(s) 381, 546
BshFI GGCC 2 cut(s) 682, 1103
BshNI GGYRCC 2 cut(s) 383, 454
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 3 cut(s) 204, 439, 512
BsiWI CGTACG 1 cut(s) 1224
BslFI GGGAC 2 cut(s) 154, 773
BslI CCNNNNNNNGG 1 cut(s) 769
BsmAI GTCTC 2 cut(s) 145, 812
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 154, 773
BsnI GGCC 2 cut(s) 682, 1103
BsoBI CYCGRG 1 cut(s) 603
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 97, 161, 477
BspANI GGCC 2 cut(s) 682, 1103
BspCNI CTCAG 3 cut(s) 552, 1303, 1423
BspFNI CGCG 2 cut(s) 381, 546
BspHI TCATGA 1 cut(s) 1176
BspLI GGNNCC 6 cut(s) 287, 385, 402, 456, 761, 891
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 1 cut(s) 156
BspT104I TTCGAA 1 cut(s) 417
BspT107I GGYRCC 2 cut(s) 383, 454
BsrDI GCAATG 4 cut(s) 449, 522, 1068, 1194
BsrFI RCCGGY 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 4 cut(s) 379, 423, 1167, 1211
BssMI GATC 3 cut(s) 97, 161, 477
BssNI GRCGYC 2 cut(s) 384, 455
BssT1I CCWWGG 2 cut(s) 1167, 1211
Bst2UI CCWGG 2 cut(s) 425, 558
Bst4CI ACNGT 3 cut(s) 578, 1037, 1117
Bst6I CTCTTC 1 cut(s) 954
BstACI GRCGYC 2 cut(s) 384, 455
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 4 cut(s) 343, 600, 1012, 1016
BstDEI CTNAG 4 cut(s) 539, 1085, 1290, 1410
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 5 cut(s) 144, 327, 333, 658, 1126
BstFNI CGCG 2 cut(s) 381, 546
BstH2I RGCGCY 2 cut(s) 387, 458
BstHHI GCGC 2 cut(s) 386, 457
BstKTI GATC 3 cut(s) 100, 164, 480
BstMAI GTCTC 2 cut(s) 145, 812
BstMBI GATC 3 cut(s) 97, 161, 477
BstMWI GCNNNNNNNGC 3 cut(s) 186, 608, 688
BstNI CCWGG 2 cut(s) 425, 558
BstSCI CCNGG 3 cut(s) 423, 510, 556
BstSFI CTRYAG 1 cut(s) 1330
BstUI CGCG 2 cut(s) 381, 546
BstV1I GCAGC 2 cut(s) 994, 1171
BsuI GTATCC 1 cut(s) 1399
BsuRI GGCC 2 cut(s) 682, 1103
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 5 cut(s) 144, 327, 333, 658, 1126
BtsI GCAGTG 2 cut(s) 417, 1006
BtsIMutI CAGTG 2 cut(s) 417, 1006
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 4 cut(s) 343, 600, 1012, 1016
CciI TCATGA 1 cut(s) 1176
CfoI GCGC 2 cut(s) 386, 457
Cfr10I RCCGGY 1 cut(s) 438
Cfr13I GGNCC 3 cut(s) 285, 760, 1101
Cfr42I CCGCGG 1 cut(s) 382
Csp6I GTAC 2 cut(s) 1033, 1225
CviAII CATG 1 cut(s) 1177
CviQI GTAC 2 cut(s) 1033, 1225
DdeI CTNAG 4 cut(s) 539, 1085, 1290, 1410
DinI GGCGCC 2 cut(s) 385, 456
DpnI GATC 3 cut(s) 99, 163, 479
DpnII GATC 3 cut(s) 97, 161, 477
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Eco130I CCWWGG 2 cut(s) 1167, 1211
Eco47I GGWCC 2 cut(s) 285, 760
Eco57I CTGAAG 2 cut(s) 978, 1268
Eco88I CYCGRG 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 423, 556
EcoT14I CCWWGG 2 cut(s) 1167, 1211
EgeI GGCGCC 2 cut(s) 385, 456
EheI GGCGCC 2 cut(s) 385, 456
ErhI CCWWGG 2 cut(s) 1167, 1211
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 1 cut(s) 1180
FaqI GGGAC 2 cut(s) 154, 773
FatI CATG 1 cut(s) 1176
FauI CCCGC 4 cut(s) 179, 356, 440, 610
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 6 cut(s) 6, 382, 547, 1008, 1185, 1348
FokI GGATG 5 cut(s) 131, 314, 320, 665, 1133
Fsp4HI GCNGC 6 cut(s) 6, 382, 547, 1008, 1185, 1348
FspBI CTAG 2 cut(s) 678, 1067
GlaI GCGC 2 cut(s) 385, 456
GluI GCNGC 6 cut(s) 6, 382, 547, 1008, 1185, 1348
GsaI CCCAGC 1 cut(s) 178
HaeII RGCGCY 2 cut(s) 387, 458
HaeIII GGCC 2 cut(s) 682, 1103
HapII CCGG 3 cut(s) 204, 439, 512
HhaI GCGC 2 cut(s) 386, 457
Hin1I GRCGYC 2 cut(s) 384, 455
Hin1II CATG 1 cut(s) 1180
Hin6I GCGC 2 cut(s) 384, 455
HinP1I GCGC 2 cut(s) 384, 455
HindIII AAGCTT 1 cut(s) 1280
HinfI GANTC 2 cut(s) 494, 583
HpaII CCGG 3 cut(s) 204, 439, 512
HphI GGTGA 3 cut(s) 202, 757, 1157
Hpy188I TCNGA 8 cut(s) 97, 161, 400, 482, 582, 647, 1293, 1324
Hpy188III TCNNGA 3 cut(s) 430, 725, 1177
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 6 cut(s) 210, 278, 325, 742, 1084, 1355
HpyCH4III ACNGT 3 cut(s) 578, 1037, 1117
HpyCH4V TGCA 8 cut(s) 520, 573, 598, 691, 769, 933, 1187, 1337
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 608, 688
HpyF3I CTNAG 4 cut(s) 539, 1085, 1290, 1410
Hsp92I GRCGYC 2 cut(s) 384, 455
Hsp92II CATG 1 cut(s) 1180
HspAI GCGC 2 cut(s) 384, 455
KasI GGCGCC 2 cut(s) 383, 454
Ksp22I TGATCA 1 cut(s) 477
KspI CCGCGG 1 cut(s) 382
Kzo9I GATC 3 cut(s) 97, 161, 477
LmnI GCTCC 3 cut(s) 350, 400, 889
Lsp1109I GCAGC 2 cut(s) 994, 1171
LweI GCATC 3 cut(s) 558, 886, 1027
MaeI CTAG 2 cut(s) 678, 1067
MaeIII GTNAC 1 cut(s) 800
MalI GATC 3 cut(s) 99, 163, 479
MboI GATC 3 cut(s) 97, 161, 477
MboII GAAGA 5 cut(s) 10, 268, 878, 971, 1280
MluCI AATT 2 cut(s) 1050, 1382
Mly113I GGCGCC 2 cut(s) 384, 455
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 3 cut(s) 919, 1245, 1383
MseI TTAA 3 cut(s) 1112, 1278, 1311
MslI CAYNNNNRTG 1 cut(s) 812
MspA1I CMGCKG 2 cut(s) 174, 381
MspI CCGG 3 cut(s) 204, 439, 512
MspR9I CCNGG 3 cut(s) 425, 512, 558
MvaI CCWGG 2 cut(s) 425, 558
MvnI CGCG 2 cut(s) 381, 546
MwoI GCNNNNNNNGC 3 cut(s) 186, 608, 688
NarI GGCGCC 2 cut(s) 384, 455
NciI CCSGG 1 cut(s) 512
NdeII GATC 3 cut(s) 97, 161, 477
NlaIII CATG 1 cut(s) 1180
NlaIV GGNNCC 6 cut(s) 287, 385, 402, 456, 761, 891
NmeAIII GCCGAG 1 cut(s) 1129
NspV TTCGAA 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 603
PagI TCATGA 1 cut(s) 1176
PaqCI CACCTGC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 583
Pfl23II CGTACG 1 cut(s) 1224
PkrI GCNGC 6 cut(s) 7, 383, 548, 1009, 1186, 1349
PleI GAGTC 1 cut(s) 502
PluTI GGCGCC 2 cut(s) 387, 458
PpsI GAGTC 1 cut(s) 502
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 423, 556
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 2 cut(s) 423, 556
PspLI CGTACG 1 cut(s) 1224
PspN4I GGNNCC 6 cut(s) 287, 385, 402, 456, 761, 891
PspPI GGNCC 3 cut(s) 285, 760, 1101
PspXI VCTCGAGB 1 cut(s) 603
RsaI GTAC 2 cut(s) 1034, 1226
RsaNI GTAC 2 cut(s) 1033, 1225
RseI CAYNNNNRTG 1 cut(s) 812
SacII CCGCGG 1 cut(s) 382
SaqAI TTAA 3 cut(s) 1112, 1278, 1311
SatI GCNGC 6 cut(s) 6, 382, 547, 1008, 1185, 1348
Sau3AI GATC 3 cut(s) 97, 161, 477
Sau96I GGNCC 3 cut(s) 285, 760, 1101
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 3 cut(s) 425, 512, 558
SfaNI GCATC 3 cut(s) 558, 886, 1027
SfcI CTRYAG 1 cut(s) 1330
SfoI GGCGCC 2 cut(s) 385, 456
Sfr274I CTCGAG 1 cut(s) 603
Sfr303I CCGCGG 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 382
SinI GGWCC 2 cut(s) 285, 760
SlaI CTCGAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 2 cut(s) 1050, 1382
SspDI GGCGCC 2 cut(s) 383, 454
SspMI CTAG 2 cut(s) 678, 1067
StyD4I CCNGG 3 cut(s) 423, 510, 556
StyI CCWWGG 2 cut(s) 1167, 1211
TaaI ACNGT 3 cut(s) 578, 1037, 1117
TaqI TCGA 3 cut(s) 417, 507, 604
TasI AATT 2 cut(s) 1050, 1382
TauI GCSGC 4 cut(s) 8, 384, 549, 1350
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 3 cut(s) 1112, 1278, 1311
Tru9I TTAA 3 cut(s) 1112, 1278, 1311
TscAI CASTG 2 cut(s) 417, 1006
TseI GCWGC 2 cut(s) 1007, 1184
TspDTI ATGAA 3 cut(s) 1071, 1370, 1410
TspGWI ACGGA 2 cut(s) 124, 1385
TspRI CASTG 2 cut(s) 417, 1006
VpaK11BI GGWCC 2 cut(s) 285, 760
XhoI CTCGAG 1 cut(s) 603
XspI CTAG 2 cut(s) 678, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.