Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015238

Physical Location & Seq

Genomic Coordinates Forward (+)

3902459 .. 3905145

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G002350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGCGGCAGTTCAAATCTTCAAAAGCTCTCGTCTTTTCCCAGCTACAAAACCCAACCCCCTCCTCTGCCTCTCCCACTTCTCCTCCGCGCCGTCCGATCAAACCCCACCACACCCCAACCCCCTAATCCCCTCCGTCGCCTCCATCCTAACCCACCTCCGATCCAAGTCCCGCTGGGGCTACCTCCGCACTCTCTACCCTTCCGGCTTCACCCCAACCGACTTTTCCCAAATCGCCCTCCACATCAAAAACAATCCCCACCTCGTCCTCCGCTTCTTCCAATGGACCCACAACCACAGCCACAACCACAACCTCCTCTCCTTCTCCACCACCATCCACATCCTCGCTCGCTCCCGCCTCAAATCCCAAGCCTATTCCCTCATCCGCGACGCCATTCGGGTATCGGAGCCTCTGCAAGTGTTCCAAGCCCTGGTCAAGACTTACCGGCAATGCGGGTCGGCGCCGTTCGTGTTTGATTACCTGATCAGAGCCTGTTTGGAGTCCAAGAAAATCGACCCGGCATTGCAGATTGTTAGAATGTTGCTCAGCCGCGGCATCAATCCTGGTTTGAACACCTGCAATAGTCTGATTCGGTGCGTGATGCAGGCTCGAGGTGCGTGGGCGGGTTATGAGATTTACAGAGAGGTTTTCGGATTGGATGGTGGGGTTAGGCCGAATGTGCAGACTTTCAATGAGTTGATGTTGGGGTTTTATCAGGACGGGGCGGCGGAGATGGTGGAGGAGATTTGGGATCAAATGCCGGAGTTTGGTTGCTGTGCTGATGTTTATAGTTACAGCATTTTGATGGAGACTTATTGTGAGGACGAGAAAATGAGTAAAGCCGAGGAGTTGTGGGAAGAAATGAGAGGTAAGGGTGTGGAGCCTGATGCTGTTGCTTACAACACTATGATTGGGGGGTTTTGCAGAGTTGGGGAGATTGAAATGGCGGAAGAGTTTTTCAAACAAATGGGATTGAGTGGGATAGAGAGTAGTGGTGCCGCTTGCGAGCATCTGGTTAGAGGGTACTGTAAAATAGGGAAAATTGATGAAGCAATGCTAGTGTATAAGGATATGCTTAGGAAAGATTTTAGGGCCGAGAGTAGTTTAACTGTGGATGAGTTGATTAGAGGGCTTTGTGGTGAGAGCAGGGTTTTAGAAGCCTTGGGGGTCATGAGAGCGGCAATGGTAGATTATGGTTTTTGTCCAAGGGAGAAGTCGTATGAGTTTTTGATAAGAGGGTTGTGTGAGCAGGGGAAGTTAGAAGAAGCACTTAAGCTTCAGGCTCAGATGGTGGGAAAAGGGTTTAAGCCGAACTCCGAAATCTATAGTGCATTTATTAGCGGTTATATGAAAGAAGGGAACACGGAAGTAGCAGAATTGTTGAGGAATGAAATGTTGGATACTCAGGTGTGTGGGATTGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

475

Amino Acids

53.51

Weight (kDa)

6.06

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	225 - 273	3.9e-09	PPR repeat family
PPR_1	PF12854	257 - 289	5.3e-08	PPR repeat
PPR_2	PF13041	267 - 309	1.3e-12	PPR repeat family
PPR_1	PF12854	291 - 323	2.6e-11	PPR repeat
PPR_2	PF13041	295 - 329	6.4e-09	PPR repeat family
PPR	PF01535	298 - 328	5.3e-08	PPR repeat
PPR_2	PF13041	406 - 439	9.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15980
fragaria_vesca	FvH4_2g02001 FvH4_2g02001 FvH4_2g02001
malus_domestica	MD10G1084800.v1.1
prunus_persica	Prupe.8G107700_v2.0.a1
pyrus_communis	pycom10g06650
rosa_chinensis	RchiOBHm_Chr6g0245191
rosa_laevigata	RLG00000015317
rosa_multiflora	Rmu_sc0027529.1_g000005 Rmu_sc0038123.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215370
rosa_rugosa	Rorug05G0512900
rosa_samantha	Rh6AG027800 Rh6BG023900
rosa_wichuraiana	Rw6G002350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	584
AccB1I	GGYRCC	2 cut(s)	460, 995
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccBSI	CCGCTC	1 cut(s)	1178
AccII	CGCG	3 cut(s)	89, 387, 552
AclWI	GGATC	2 cut(s)	156, 759
AcuI	CTGAAG	1 cut(s)	1262
AcyI	GRCGYC	2 cut(s)	390, 461
AfaI	GTAC	1 cut(s)	1025
AfiI	CCNNNNNNNGG	2 cut(s)	430, 767
AflII	CTTAAG	1 cut(s)	1271
AgsI	TTSAA	6 cut(s)	14, 22, 571, 691, 941, 961
AjnI	CCWGG	2 cut(s)	429, 562
AjuI	GAANNNNNNNTTGG	4 cut(s)	208, 240, 1379, 1411
AluBI	AGCT	3 cut(s)	27, 44, 1276
AluI	AGCT	3 cut(s)	27, 44, 1276
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	2 cut(s)	156, 759
AlwNI	CAGNNNCTG	1 cut(s)	492
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	2 cut(s)	671, 1092
AspLEI	GCGC	2 cut(s)	91, 463
AspS9I	GGNCC	2 cut(s)	285, 1092
AsuC2I	CCSGG	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	202, 1151
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	1392, 1425
BanI	GGYRCC	2 cut(s)	460, 995
BccI	CCATC	6 cut(s)	152, 341, 653, 727, 799, 1282
BceAI	ACGGC	2 cut(s)	76, 448
BciT130I	CCWGG	2 cut(s)	431, 564
BciVI	GTATCC	1 cut(s)	1393
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	1 cut(s)	1058
BfmI	CTRYAG	1 cut(s)	1324
BfoI	RGCGCY	1 cut(s)	464
BfrI	CTTAAG	1 cut(s)	1271
BfuAI	ACCTGC	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	1393
BisI	GCNGC	6 cut(s)	6, 550, 553, 726, 999, 1179
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	6 cut(s)	7, 551, 554, 727, 1000, 1180
Bme1390I	CCNGG	3 cut(s)	431, 518, 564
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	285, 1092
BmiI	GGNNCC	5 cut(s)	287, 408, 462, 882, 997
BmrFI	CCNGG	3 cut(s)	431, 518, 564
BmsI	GCATC	4 cut(s)	564, 591, 877, 1018
Bpu10I	CCTNAGC	1 cut(s)	1076
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	390, 461
BsaJI	CCNNGG	5 cut(s)	429, 550, 843, 1161, 1205
BsaXI	ACNNNNNCTCC	6 cut(s)	68, 98, 302, 332, 1202, 1232
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 767
Bse118I	RCCGGY	1 cut(s)	444
Bse3DI	GCAATG	4 cut(s)	455, 521, 1059, 1188
BseBI	CCWGG	2 cut(s)	431, 564
BseDI	CCNNGG	5 cut(s)	429, 550, 843, 1161, 1205
BseGI	GGATG	6 cut(s)	144, 333, 339, 381, 664, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	430, 767
BseMI	GCAATG	4 cut(s)	455, 521, 1059, 1188
BseMII	CTCAG	3 cut(s)	559, 1298, 1418
BseRI	GAGGAG	5 cut(s)	53, 73, 305, 755, 860
BseYI	CCCAGC	2 cut(s)	40, 174
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	3 cut(s)	89, 387, 552
BshFI	GGCC	2 cut(s)	673, 1094
BshNI	GGYRCC	2 cut(s)	460, 995
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	4 cut(s)	204, 445, 518, 761
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	430, 767
BsmAI	GTCTC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	673, 1094
BsoBI	CYCGRG	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	97, 161, 483, 751
Bsp1720I	GCTNAGC	1 cut(s)	545
BspANI	GGCC	2 cut(s)	673, 1094
BspCNI	CTCAG	3 cut(s)	558, 1297, 1417
BspFNI	CGCG	3 cut(s)	89, 387, 552
BspHI	TCATGA	1 cut(s)	1170
BspLI	GGNNCC	5 cut(s)	287, 408, 462, 882, 997
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	2 cut(s)	156, 759
BspT107I	GGYRCC	2 cut(s)	460, 995
BspTI	CTTAAG	1 cut(s)	1271
BsrBI	CCGCTC	1 cut(s)	1178
BsrDI	GCAATG	4 cut(s)	455, 521, 1059, 1188
BsrFI	RCCGGY	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	5 cut(s)	429, 550, 843, 1161, 1205
BssMI	GATC	4 cut(s)	97, 161, 483, 751
BssNI	GRCGYC	2 cut(s)	390, 461
BssT1I	CCWWGG	2 cut(s)	1161, 1205
Bst2UI	CCWGG	2 cut(s)	431, 564
Bst4CI	ACNGT	2 cut(s)	1028, 1111
Bst6I	CTCTTC	1 cut(s)	945
BstACI	GRCGYC	2 cut(s)	390, 461
BstAFI	CTTAAG	1 cut(s)	1271
BstC8I	GCNNGC	4 cut(s)	349, 606, 1003, 1007
BstDEI	CTNAG	4 cut(s)	545, 1076, 1284, 1404
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	6 cut(s)	144, 333, 339, 381, 664, 1120
BstFNI	CGCG	3 cut(s)	89, 387, 552
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	91, 463
BstKTI	GATC	4 cut(s)	100, 164, 486, 754
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	4 cut(s)	97, 161, 483, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 614, 679
BstNI	CCWGG	2 cut(s)	431, 564
BstSCI	CCNGG	3 cut(s)	429, 516, 562
BstSFI	CTRYAG	1 cut(s)	1324
BstUI	CGCG	3 cut(s)	89, 387, 552
BsuI	GTATCC	1 cut(s)	1393
BsuRI	GGCC	2 cut(s)	673, 1094
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	6 cut(s)	144, 333, 339, 381, 664, 1120
BveI	ACCTGC	1 cut(s)	584
Cac8I	GCNNGC	4 cut(s)	349, 606, 1003, 1007
CaiI	CAGNNNCTG	1 cut(s)	492
CciI	TCATGA	1 cut(s)	1170
CfoI	GCGC	2 cut(s)	91, 463
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	285, 1092
Cfr42I	CCGCGG	1 cut(s)	553
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	1024
CviAII	CATG	1 cut(s)	1171
CviQI	GTAC	1 cut(s)	1024
DdeI	CTNAG	4 cut(s)	545, 1076, 1284, 1404
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	4 cut(s)	99, 163, 485, 753
DpnII	GATC	4 cut(s)	97, 161, 483, 751
Eam1104I	CTCTTC	1 cut(s)	945
EarI	CTCTTC	1 cut(s)	945
EciI	GGCGGA	2 cut(s)	743, 962
Eco130I	CCWWGG	2 cut(s)	1161, 1205
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	1262
Eco88I	CYCGRG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	429, 562
EcoT14I	CCWWGG	2 cut(s)	1161, 1205
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	1161, 1205
FaeI	CATG	1 cut(s)	1174
FalI	AAGNNNNNCTT	2 cut(s)	1254, 1286
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	1170
FauI	CCCGC	4 cut(s)	179, 362, 446, 616
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	6 cut(s)	6, 550, 553, 726, 999, 1179
FokI	GGATG	6 cut(s)	131, 320, 326, 368, 671, 1127
Fsp4HI	GCNGC	6 cut(s)	6, 550, 553, 726, 999, 1179
FspBI	CTAG	1 cut(s)	1058
GlaI	GCGC	2 cut(s)	90, 462
GluI	GCNGC	6 cut(s)	6, 550, 553, 726, 999, 1179
GsaI	CCCAGC	2 cut(s)	44, 178
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	673, 1094
HapII	CCGG	4 cut(s)	204, 445, 518, 761
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	2 cut(s)	91, 463
Hin1I	GRCGYC	2 cut(s)	390, 461
Hin1II	CATG	1 cut(s)	1174
Hin6I	GCGC	2 cut(s)	89, 461
HinP1I	GCGC	2 cut(s)	89, 461
HindIII	AAGCTT	1 cut(s)	1274
HinfI	GANTC	2 cut(s)	500, 589
HpaII	CCGG	4 cut(s)	204, 445, 518, 761
HphI	GGTGA	2 cut(s)	202, 1151
Hpy188I	TCNGA	8 cut(s)	97, 161, 406, 488, 588, 653, 1287, 1318
Hpy188III	TCNNGA	3 cut(s)	436, 716, 1171
Hpy99I	CGWCG	2 cut(s)	140, 392
HpyAV	CCTTC	3 cut(s)	210, 331, 1349
HpyCH4III	ACNGT	2 cut(s)	1028, 1111
HpyCH4V	TGCA	8 cut(s)	415, 526, 579, 604, 682, 924, 1331, 1421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 614, 679
HpyF3I	CTNAG	4 cut(s)	545, 1076, 1284, 1404
Hsp92I	GRCGYC	2 cut(s)	390, 461
Hsp92II	CATG	1 cut(s)	1174
HspAI	GCGC	2 cut(s)	89, 461
KasI	GGCGCC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	483
KspI	CCGCGG	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	97, 161, 483, 751
LmnI	GCTCC	3 cut(s)	356, 406, 880
LweI	GCATC	4 cut(s)	564, 591, 877, 1018
MaeI	CTAG	1 cut(s)	1058
MaeIII	GTNAC	1 cut(s)	791
MalI	GATC	4 cut(s)	99, 163, 485, 753
MbiI	CCGCTC	1 cut(s)	1178
MboI	GATC	4 cut(s)	97, 161, 483, 751
MboII	GAAGA	5 cut(s)	10, 268, 869, 962, 1274
MluCI	AATT	2 cut(s)	1041, 1376
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	1377
MseI	TTAA	3 cut(s)	1106, 1272, 1305
MslI	CAYNNNNRTG	1 cut(s)	803
MspA1I	CMGCKG	2 cut(s)	174, 552
MspCI	CTTAAG	1 cut(s)	1271
MspI	CCGG	4 cut(s)	204, 445, 518, 761
MspR9I	CCNGG	3 cut(s)	431, 518, 564
MvaI	CCWGG	2 cut(s)	431, 564
MvnI	CGCG	3 cut(s)	89, 387, 552
MwoI	GCNNNNNNNGC	3 cut(s)	186, 614, 679
NarI	GGCGCC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	518
NdeII	GATC	4 cut(s)	97, 161, 483, 751
NlaIII	CATG	1 cut(s)	1174
NlaIV	GGNNCC	5 cut(s)	287, 408, 462, 882, 997
NmeAIII	GCCGAG	2 cut(s)	868, 1120
PaeR7I	CTCGAG	1 cut(s)	609
PagI	TCATGA	1 cut(s)	1170
PaqCI	CACCTGC	1 cut(s)	584
PfeI	GAWTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	6 cut(s)	7, 551, 554, 727, 1000, 1180
PleI	GAGTC	1 cut(s)	508
PluTI	GGCGCC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	429, 562
PspFI	CCCAGC	2 cut(s)	40, 174
PspGI	CCWGG	2 cut(s)	429, 562
PspN4I	GGNNCC	5 cut(s)	287, 408, 462, 882, 997
PspPI	GGNCC	2 cut(s)	285, 1092
PspXI	VCTCGAGB	1 cut(s)	609
PstNI	CAGNNNCTG	1 cut(s)	492
RsaI	GTAC	1 cut(s)	1025
RsaNI	GTAC	1 cut(s)	1024
RseI	CAYNNNNRTG	1 cut(s)	803
SacII	CCGCGG	1 cut(s)	553
SaqAI	TTAA	3 cut(s)	1106, 1272, 1305
SatI	GCNGC	6 cut(s)	6, 550, 553, 726, 999, 1179
Sau3AI	GATC	4 cut(s)	97, 161, 483, 751
Sau96I	GGNCC	2 cut(s)	285, 1092
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	3 cut(s)	431, 518, 564
SfaNI	GCATC	4 cut(s)	564, 591, 877, 1018
SfcI	CTRYAG	1 cut(s)	1324
SfoI	GGCGCC	1 cut(s)	462
Sfr274I	CTCGAG	1 cut(s)	609
Sfr303I	CCGCGG	1 cut(s)	553
SgrBI	CCGCGG	1 cut(s)	553
SinI	GGWCC	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	2 cut(s)	609, 1271
SmoI	CTYRAG	2 cut(s)	609, 1271
Sse9I	AATT	2 cut(s)	1041, 1376
SspDI	GGCGCC	1 cut(s)	460
SspMI	CTAG	1 cut(s)	1058
StyD4I	CCNGG	3 cut(s)	429, 516, 562
StyI	CCWWGG	2 cut(s)	1161, 1205
TaaI	ACNGT	2 cut(s)	1028, 1111
TaqI	TCGA	2 cut(s)	513, 610
TasI	AATT	2 cut(s)	1041, 1376
TauI	GCSGC	6 cut(s)	8, 552, 555, 728, 1001, 1181
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	3 cut(s)	1106, 1272, 1305
Tru9I	TTAA	3 cut(s)	1106, 1272, 1305
TspDTI	ATGAA	3 cut(s)	1062, 1364, 1404
TspGWI	ACGGA	2 cut(s)	124, 1379
Van91I	CCANNNNNTGG	1 cut(s)	430
Vha464I	CTTAAG	1 cut(s)	1271
VpaK11BI	GGWCC	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	609
XspI	CTAG	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.