RLG00000015317

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
64476634 .. 64478817
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015317

Sequence Viewer

Length: 1533 bp
ATGGCGGCAGTTCAAATCTTCAAAAGCTCTCGTCTCTTCCCATCTACAAAACCCAAGCCCCTCCTCTGCCTCTCCCACTTCTCCTCCGCGCCGTCCGATCAAACCCCACCAGAACCCAACCCCCTAATCCCCTCCGTCGTCTCCATCCTAACCCACCTCCGATCCAAGTCCCGCTGGGGCTACCTCCGCTCTCTCTACCCTTCCGGCTTCACCCCAACCGACTTTTCCCAAATCGCCCTCCACATCAAAAACAATCCCCACCTCGTCCTCCGCTTCTTCCAATGGACCCACAACCACCACAACAACCACAACCTCCTCTCCTTCTCCACCACCATCCACATCCTCGCTCGCTCTCGCCTCAAATCCCAAGCCTATTCCCTTATCCGCGACGCCATTCGGGTTTCGGAGCCTCTGGCACTTTTCGAAGCCCTGGTCAAGACTTACCGGCAATGCGGGTCGGCGCCGTTCGTGTTTGATTACCTGATCAGAGCTTGTTTGGAGTCCAAGAAAATCGACCCGGCAATGCAGATTGTTAGAATGTTGCTCAGTCGCGGCATCAATCCTGGTTTGAATACCTGCAATAGTCTGATTCGGTGCGTAATGCAGGCTCGAGGTGCGTGGGCGGGTTATGAGATTTACAGAGAGGTTTTCGGATTGGATGGTGGGGTTAGGGTTGCGAGAGCTAGGCCGAATGTGCAGACTTTCAATGAGTTGATGCTGGGGTTTTATCAGGACGGGGCGGTGGAGATGGTGGAGGAGATTTGGGACCAAATGCCGGAGTTTGGTTGCTGTGCTGATGTTTATAGTTACAGCATTTTGATGGAGACTTACTGTGAGGACGAGAAAATGAGTAAAGCCGAGGAGTTGTGGGAAGAAATGAGAGGTAAGGGTGTGGAGCCTGATGCTGTTGCTTATAATACTATGATTGGGGGGTTTTGCAGAGTTGGAGAGATTGAAATGGCTGAAGAGTTTTTCAAACAAATGGGATTGAGTGGAATAGAGAGTAGTGGTGCCGCTTGTGAGCATTTGGTTAGAGGGTACTGTAAAATAGGGAAAATTGATGGAGCAATGCTAGTGTACAAGGATATGCTTAGGAAAGATTTTAGGGCCGAGAGTTTAACTGTGGATGAGTTGATCAGAGGGCTTTGTGGTGAGAGCAGGGTTTTAGAAGCCTTGGAGGTCATGAGAGCTGCAATGGTAGATTATGGTTTTTGTCCGAGGGAGAAGTCGTATGAGTTTTTGATAAGAGGGTTGTGTGAGCAGGGGAAGTTGGAAGAAGCGCTTAAGCTTCAGGCTCAGATGGTTGGTAAAGGGTTTAAACCAAATTCTGAAATCTATAGTGCATTTATTAGTGGATATATGAAAGAAGGGAACAAGGAAGTAGCAGAATTGTTGAGGAATGAAATGTTGGATACTCAGCTGCTGGGAAGATTCTTTGAGAAATTGAGGAAGGATCGAGTGAATGAGCATTTTCTTGAGTTGGGAAATGTATTAGATCCAGACAGACCCAAAATGACAAAGCAACCATCCTAG

Protein Analysis

511

Amino Acids

57.92

Weight (kDa)

6.84

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 230 - 278 7.4e-10 PPR repeat family
PPR_1 PF12854 262 - 294 5.8e-08 PPR repeat
PPR_2 PF13041 272 - 314 1.5e-12 PPR repeat family
PPR_1 PF12854 296 - 328 2.9e-11 PPR repeat
PPR_2 PF13041 300 - 334 7.1e-09 PPR repeat family
PPR PF01535 303 - 333 5.8e-08 PPR repeat
PPR_2 PF13041 340 - 383 5.8e-06 PPR repeat family
PPR_2 PF13041 410 - 444 5.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15980
fragaria_vesca FvH4_2g02001 FvH4_2g02001 FvH4_2g02001
malus_domestica MD10G1084800.v1.1
prunus_persica Prupe.8G107700_v2.0.a1
pyrus_communis pycom10g06650
rosa_chinensis RchiOBHm_Chr6g0245191
rosa_laevigata RLG00000015317
rosa_multiflora Rmu_sc0027529.1_g000005 Rmu_sc0038123.1_g000001
rosa_roxburghii Rroxscaffold_7G00215370
rosa_rugosa Rorug05G0512900
rosa_samantha Rh6AG027800 Rh6BG023900
rosa_wichuraiana Rw6G002350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
Acc36I ACCTGC 1 cut(s) 584
AccB1I GGYRCC 2 cut(s) 460, 1010
AccBSI CCGCTC 1 cut(s) 189
AccII CGCG 3 cut(s) 89, 387, 552
AclWI GGATC 3 cut(s) 156, 1461, 1490
AcsI RAATTY 1 cut(s) 1324
AcuI CTGAAG 2 cut(s) 984, 1274
AcyI GRCGYC 2 cut(s) 390, 461
AfaI GTAC 2 cut(s) 1040, 1079
AfeI AGCGCT 1 cut(s) 1281
AfiI CCNNNNNNNGG 2 cut(s) 775, 782
AflII CTTAAG 1 cut(s) 1283
AgsI TTSAA 6 cut(s) 14, 22, 571, 706, 956, 976
AjnI CCWGG 2 cut(s) 429, 562
AjuI GAANNNNNNNTTGG 4 cut(s) 208, 240, 1391, 1423
AluBI AGCT 6 cut(s) 27, 491, 683, 1190, 1288, 1420
AluI AGCT 6 cut(s) 27, 491, 683, 1190, 1288, 1420
Alw26I GTCTC 3 cut(s) 38, 145, 818
AlwI GGATC 3 cut(s) 156, 1461, 1490
AlwNI CAGNNNCTG 1 cut(s) 1423
Ama87I CYCGRG 1 cut(s) 609
Aor51HI AGCGCT 1 cut(s) 1281
AoxI GGCC 2 cut(s) 686, 1107
ApeKI GCWGC 2 cut(s) 1190, 1420
ApoI RAATTY 1 cut(s) 1324
ArsI GACNNNNNNTTYG 2 cut(s) 417, 449
AspLEI GCGC 3 cut(s) 91, 463, 1282
AspS9I GGNCC 3 cut(s) 285, 766, 1107
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 2 cut(s) 202, 1163
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 2 cut(s) 285, 766
BanI GGYRCC 2 cut(s) 460, 1010
BbvI GCAGC 2 cut(s) 1177, 1407
BccI CCATC 8 cut(s) 49, 152, 341, 653, 742, 814, 1055, 1294
BceAI ACGGC 2 cut(s) 76, 448
BciT130I CCWGG 2 cut(s) 431, 564
BciVI GTATCC 1 cut(s) 1405
BclI TGATCA 2 cut(s) 483, 1134
BcnI CCSGG 1 cut(s) 518
BcoDI GTCTC 3 cut(s) 38, 145, 818
BfaI CTAG 3 cut(s) 684, 1073, 1531
BfmI CTRYAG 1 cut(s) 1336
BfoI RGCGCY 2 cut(s) 464, 1283
BfrI CTTAAG 1 cut(s) 1283
BfuAI ACCTGC 1 cut(s) 584
BfuI GTATCC 1 cut(s) 1405
BisI GCNGC 5 cut(s) 6, 553, 1014, 1191, 1421
BlsI GCNGC 5 cut(s) 7, 554, 1015, 1192, 1422
Bme1390I CCNGG 3 cut(s) 431, 518, 564
Bme18I GGWCC 2 cut(s) 285, 766
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 3 cut(s) 285, 766, 1107
BmiI GGNNCC 6 cut(s) 287, 408, 462, 767, 897, 1012
BmrFI CCNGG 3 cut(s) 431, 518, 564
BmsI GCATC 3 cut(s) 564, 705, 892
Bpu10I CCTNAGC 1 cut(s) 1091
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 1496
BpuMI CCSGG 1 cut(s) 518
BsaHI GRCGYC 2 cut(s) 390, 461
BsaJI CCNNGG 4 cut(s) 429, 858, 1173, 1217
BsaXI ACNNNNNCTCC 6 cut(s) 68, 98, 302, 332, 1214, 1244
Bsc4I CCNNNNNNNGG 2 cut(s) 775, 782
Bse118I RCCGGY 1 cut(s) 444
Bse3DI GCAATG 4 cut(s) 455, 528, 1074, 1200
BseBI CCWGG 2 cut(s) 431, 564
BseDI CCNNGG 4 cut(s) 429, 858, 1173, 1217
BseGI GGATG 6 cut(s) 144, 333, 339, 664, 1132, 1526
BseLI CCNNNNNNNGG 2 cut(s) 775, 782
BseMI GCAATG 4 cut(s) 455, 528, 1074, 1200
BseMII CTCAG 3 cut(s) 559, 1310, 1430
BseRI GAGGAG 5 cut(s) 53, 73, 305, 770, 875
BseXI GCAGC 2 cut(s) 1177, 1407
BseYI CCCAGC 3 cut(s) 174, 718, 1423
BsgI GTGCAG 1 cut(s) 716
Bsh1236I CGCG 3 cut(s) 89, 387, 552
BshFI GGCC 2 cut(s) 688, 1109
BshNI GGYRCC 2 cut(s) 460, 1010
BsiHKCI CYCGRG 1 cut(s) 609
BsiSI CCGG 4 cut(s) 204, 445, 518, 776
BslFI GGGAC 2 cut(s) 154, 779
BslI CCNNNNNNNGG 2 cut(s) 775, 782
BsmAI GTCTC 3 cut(s) 38, 145, 818
BsmBI CGTCTC 2 cut(s) 38, 145
BsmFI GGGAC 2 cut(s) 154, 779
BsnI GGCC 2 cut(s) 688, 1109
BsoBI CYCGRG 1 cut(s) 609
Bsp119I TTCGAA 1 cut(s) 423
Bsp1407I TGTACA 1 cut(s) 1077
Bsp143I GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
BspANI GGCC 2 cut(s) 688, 1109
BspCNI CTCAG 3 cut(s) 558, 1309, 1429
BspFNI CGCG 3 cut(s) 89, 387, 552
BspHI TCATGA 1 cut(s) 1182
BspLI GGNNCC 6 cut(s) 287, 408, 462, 767, 897, 1012
BspMI ACCTGC 1 cut(s) 584
BspPI GGATC 3 cut(s) 156, 1461, 1490
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 460, 1010
BspTI CTTAAG 1 cut(s) 1283
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 4 cut(s) 455, 528, 1074, 1200
BsrFI RCCGGY 1 cut(s) 444
BsrGI TGTACA 1 cut(s) 1077
BssAI RCCGGY 1 cut(s) 444
BssECI CCNNGG 4 cut(s) 429, 858, 1173, 1217
BssMI GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
BssNI GRCGYC 2 cut(s) 390, 461
BssT1I CCWWGG 1 cut(s) 1173
Bst2UI CCWGG 2 cut(s) 431, 564
Bst4CI ACNGT 3 cut(s) 833, 1043, 1123
Bst6I CTCTTC 2 cut(s) 41, 960
BstACI GRCGYC 2 cut(s) 390, 461
BstAFI CTTAAG 1 cut(s) 1283
BstAUI TGTACA 1 cut(s) 1077
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 349, 606
BstDEI CTNAG 4 cut(s) 545, 1091, 1296, 1416
BstF5I GGATG 6 cut(s) 144, 333, 339, 664, 1132, 1526
BstFNI CGCG 3 cut(s) 89, 387, 552
BstH2I RGCGCY 2 cut(s) 464, 1283
BstHHI GCGC 3 cut(s) 91, 463, 1282
BstKTI GATC 6 cut(s) 100, 164, 486, 1137, 1456, 1498
BstMAI GTCTC 3 cut(s) 38, 145, 818
BstMBI GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
BstMWI GCNNNNNNNGC 3 cut(s) 186, 614, 694
BstNI CCWGG 2 cut(s) 431, 564
BstSCI CCNGG 3 cut(s) 429, 516, 562
BstSFI CTRYAG 1 cut(s) 1336
BstUI CGCG 3 cut(s) 89, 387, 552
BstV1I GCAGC 2 cut(s) 1177, 1407
BstX2I RGATCY 1 cut(s) 1495
BstYI RGATCY 1 cut(s) 1495
BsuI GTATCC 1 cut(s) 1405
BsuRI GGCC 2 cut(s) 688, 1109
BtsCI GGATG 6 cut(s) 144, 333, 339, 664, 1132, 1526
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 2 cut(s) 349, 606
CaiI CAGNNNCTG 1 cut(s) 1423
CciI TCATGA 1 cut(s) 1182
CfoI GCGC 3 cut(s) 91, 463, 1282
Cfr10I RCCGGY 1 cut(s) 444
Cfr13I GGNCC 3 cut(s) 285, 766, 1107
CseI GACGC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 1039, 1078
CviAII CATG 1 cut(s) 1183
CviQI GTAC 2 cut(s) 1039, 1078
DdeI CTNAG 4 cut(s) 545, 1091, 1296, 1416
DinI GGCGCC 1 cut(s) 462
DpnI GATC 6 cut(s) 99, 163, 485, 1136, 1455, 1497
DpnII GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
DraI TTTAAA 1 cut(s) 1318
Eam1104I CTCTTC 2 cut(s) 41, 960
EarI CTCTTC 2 cut(s) 41, 960
Eco130I CCWWGG 1 cut(s) 1173
Eco47I GGWCC 2 cut(s) 285, 766
Eco47III AGCGCT 1 cut(s) 1281
Eco57I CTGAAG 2 cut(s) 984, 1274
Eco88I CYCGRG 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 429, 562
EcoT14I CCWWGG 1 cut(s) 1173
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 1173
Esp3I CGTCTC 2 cut(s) 38, 145
FaeI CATG 1 cut(s) 1186
FalI AAGNNNNNCTT 2 cut(s) 1266, 1298
FaqI GGGAC 2 cut(s) 154, 779
FatI CATG 1 cut(s) 1182
FauI CCCGC 3 cut(s) 179, 446, 616
FbaI TGATCA 2 cut(s) 483, 1134
Fnu4HI GCNGC 5 cut(s) 6, 553, 1014, 1191, 1421
FokI GGATG 6 cut(s) 131, 320, 326, 671, 1139, 1513
Fsp4HI GCNGC 5 cut(s) 6, 553, 1014, 1191, 1421
FspBI CTAG 3 cut(s) 684, 1073, 1531
GlaI GCGC 3 cut(s) 90, 462, 1281
GluI GCNGC 5 cut(s) 6, 553, 1014, 1191, 1421
GsaI CCCAGC 3 cut(s) 178, 722, 1427
HaeII RGCGCY 2 cut(s) 464, 1283
HaeIII GGCC 2 cut(s) 688, 1109
HapII CCGG 4 cut(s) 204, 445, 518, 776
HgaI GACGC 1 cut(s) 398
HhaI GCGC 3 cut(s) 91, 463, 1282
Hin1I GRCGYC 2 cut(s) 390, 461
Hin1II CATG 1 cut(s) 1186
Hin6I GCGC 3 cut(s) 89, 461, 1280
HinP1I GCGC 3 cut(s) 89, 461, 1280
HindIII AAGCTT 1 cut(s) 1286
HinfI GANTC 3 cut(s) 500, 589, 1431
HpaII CCGG 4 cut(s) 204, 445, 518, 776
HphI GGTGA 2 cut(s) 202, 1163
Hpy166II GTNNAC 1 cut(s) 1078
Hpy188III TCNNGA 5 cut(s) 436, 731, 1183, 1475, 1499
Hpy8I GTNNAC 1 cut(s) 1078
Hpy99I CGWCG 2 cut(s) 140, 392
HpyAV CCTTC 4 cut(s) 210, 331, 1361, 1444
HpyCH4III ACNGT 3 cut(s) 833, 1043, 1123
HpyCH4V TGCA 7 cut(s) 526, 579, 604, 697, 939, 1193, 1343
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 614, 694
HpyF3I CTNAG 4 cut(s) 545, 1091, 1296, 1416
Hsp92I GRCGYC 2 cut(s) 390, 461
Hsp92II CATG 1 cut(s) 1186
HspAI GCGC 3 cut(s) 89, 461, 1280
KasI GGCGCC 1 cut(s) 460
Ksp22I TGATCA 2 cut(s) 483, 1134
Kzo9I GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
LmnI GCTCC 3 cut(s) 406, 895, 1064
Lsp1109I GCAGC 2 cut(s) 1177, 1407
LweI GCATC 3 cut(s) 564, 705, 892
MaeI CTAG 3 cut(s) 684, 1073, 1531
MaeIII GTNAC 1 cut(s) 806
MalI GATC 6 cut(s) 99, 163, 485, 1136, 1455, 1497
MbiI CCGCTC 1 cut(s) 189
MboI GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
MboII GAAGA 7 cut(s) 10, 28, 268, 884, 977, 1286, 1440
MflI RGATCY 1 cut(s) 1495
MluCI AATT 4 cut(s) 1056, 1324, 1388, 1442
Mly113I GGCGCC 1 cut(s) 461
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 3 cut(s) 925, 1251, 1389
MseI TTAA 3 cut(s) 1118, 1284, 1317
MslI CAYNNNNRTG 1 cut(s) 818
MspA1I CMGCKG 2 cut(s) 174, 1420
MspCI CTTAAG 1 cut(s) 1283
MspI CCGG 4 cut(s) 204, 445, 518, 776
MspR9I CCNGG 3 cut(s) 431, 518, 564
MssI GTTTAAAC 1 cut(s) 1318
MvaI CCWGG 2 cut(s) 431, 564
MvnI CGCG 3 cut(s) 89, 387, 552
MwoI GCNNNNNNNGC 3 cut(s) 186, 614, 694
NarI GGCGCC 1 cut(s) 461
NciI CCSGG 1 cut(s) 518
NdeII GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
NlaIII CATG 1 cut(s) 1186
NlaIV GGNNCC 6 cut(s) 287, 408, 462, 767, 897, 1012
NmeAIII GCCGAG 2 cut(s) 883, 1135
NspV TTCGAA 1 cut(s) 423
PaeR7I CTCGAG 1 cut(s) 609
PagI TCATGA 1 cut(s) 1182
PfeI GAWTC 2 cut(s) 589, 1431
PkrI GCNGC 5 cut(s) 7, 554, 1015, 1192, 1422
PleI GAGTC 1 cut(s) 508
PluTI GGCGCC 1 cut(s) 464
PmeI GTTTAAAC 1 cut(s) 1318
PpsI GAGTC 1 cut(s) 508
PsiI TTATAA 1 cut(s) 915
Psp6I CCWGG 2 cut(s) 429, 562
PspFI CCCAGC 3 cut(s) 174, 718, 1423
PspGI CCWGG 2 cut(s) 429, 562
PspN4I GGNNCC 6 cut(s) 287, 408, 462, 767, 897, 1012
PspPI GGNCC 3 cut(s) 285, 766, 1107
PspXI VCTCGAGB 1 cut(s) 609
PstNI CAGNNNCTG 1 cut(s) 1423
PsuI RGATCY 1 cut(s) 1495
PvuII CAGCTG 1 cut(s) 1420
RsaI GTAC 2 cut(s) 1040, 1079
RsaNI GTAC 2 cut(s) 1039, 1078
RseI CAYNNNNRTG 1 cut(s) 818
SaqAI TTAA 3 cut(s) 1118, 1284, 1317
SatI GCNGC 5 cut(s) 6, 553, 1014, 1191, 1421
Sau3AI GATC 6 cut(s) 97, 161, 483, 1134, 1453, 1495
Sau96I GGNCC 3 cut(s) 285, 766, 1107
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 3 cut(s) 431, 518, 564
SfaNI GCATC 3 cut(s) 564, 705, 892
SfcI CTRYAG 1 cut(s) 1336
SfoI GGCGCC 1 cut(s) 462
Sfr274I CTCGAG 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 423
SinI GGWCC 2 cut(s) 285, 766
SlaI CTCGAG 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 3 cut(s) 609, 1283, 1475
SmoI CTYRAG 3 cut(s) 609, 1283, 1475
Sse9I AATT 4 cut(s) 1056, 1324, 1388, 1442
SspDI GGCGCC 1 cut(s) 460
SspMI CTAG 3 cut(s) 684, 1073, 1531
StyD4I CCNGG 3 cut(s) 429, 516, 562
StyI CCWWGG 1 cut(s) 1173
TaaI ACNGT 3 cut(s) 833, 1043, 1123
TaqI TCGA 4 cut(s) 423, 513, 610, 1456
TasI AATT 4 cut(s) 1056, 1324, 1388, 1442
TatI WGTACW 1 cut(s) 1077
TauI GCSGC 3 cut(s) 8, 555, 1016
TfiI GAWTC 2 cut(s) 589, 1431
Tru1I TTAA 3 cut(s) 1118, 1284, 1317
Tru9I TTAA 3 cut(s) 1118, 1284, 1317
TseI GCWGC 2 cut(s) 1190, 1420
TspDTI ATGAA 2 cut(s) 1376, 1416
TspGWI ACGGA 1 cut(s) 124
Vha464I CTTAAG 1 cut(s) 1283
VpaK11BI GGWCC 2 cut(s) 285, 766
XapI RAATTY 1 cut(s) 1324
XhoI CTCGAG 1 cut(s) 609
XspI CTAG 3 cut(s) 684, 1073, 1531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.