AT2G16650
NAC Family

Proteinaceous RNase P

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
7215591 .. 7218558
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16650.2

Sequence Viewer

Length: 1587 bp
ATGGCTGCTTCTGATCAACACCGGTCTCGCCGTCACGACGAGAGCTCTTCAAGACCCAACAAGAAGAAGAAGGTAAGCAGAAACCCAGAAACAAATCTCCTCTTCAATCTCAATTCATGCTCCAAGTCCAAGGACCTCTCAGCTGCATTAGCACTTTATGATGCAGCCATCACTTCCAGTGAAGTACGTCTCAGCCAGCAACATTTTCAAACGCTTCTGTACCTATGCTCAGCTTCCATTACTGACATATCTCTTCAATACCTTGCCATTGACCGTGGTTTCGAGATTTTTGATCGTATGGTTAGTTCGGGGATAAGTCCTAATGAGGCATCTGTTACTTCAGTGGCTAGACTGGCTGCTGCTAAAGGTAATGGTGATTATGCTTTCAAGGTTGTTAAGGAGTTTGTTTCTGTTGGAGGTGTGTCGATTCCTCGTCTGAGGACATATGCGCCGGCTTTGCTCTGTTTCTGCGAGAAGTTGGAGGCTGAAAAGGGTTATGAGGTAGAAGAGCACATGGAAGCTGCAGGTATTGCATTGGAGGAGGCAGAGATATCGGCTTTGTTGAAGGTAAGTGCTGCCACGGGTCGAGAAAACAAGGTTTATAGATATTTACATAAGTTGAGGGAATATGTTGGCTGCGTTAGTGAAGAAACTTTGAAAATTATTGAGGAATGGTTCTGTGGAGAAAAAGCTGGTGAGGTTGGTGATAATGGAATTGGTTCTGATGTTGGGATGCTTAGAGAAGCTGTTTTGAATAATGGAGGTGGGTGGCACGGGCATGGGTGGGTTGGGGAGGGTAAATGGACTGTAAAGAAAGGTAATGTTAGCTCAACAGGAAGATGTTTGAGCTGCAGTGAGCAGTTAGCTTGTGTAGATACCAATGAGGTAGAAACACAGAAGTTTGTGGATTCTTTGGTGGCTTTGGCTATGGATAGGAAGACAAAGATGAATTCATGTGAGACAAATGTGGTCTTCAGCGAGTTTCAGGACTGGCTTGAGAAACATGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGTAGATGGCAGTTTCAGTCTTTCACAGCTTGAATCTGTGATGAAGGAACTTTACCGTGAAAGTGGTAATAACAAATGGCCCCTAATTCTATTGCACAAGAGACGGGTCAAGACGCTTTTAGAAAACCCAACTCACCGGAATCTGGTTGAAGAATGGATTAGTAACGGTGTCCTGTATGCAACTCCACCAGGTTCCAATGATGATTGGTATTGGCTGTATGCTGCTGCTAAGCTCAAGTGTTTGCTTGTGACAAATGATGAGATGAGAGACCACATTTTTGAACTCTTAGGGAGTACTTTTTTCCAAAAGTGGAAAGAAAGACATCAGGTCCGGTATACTTTTGTGAAAGGTAACCTGAAGCTTGAAATGCCGTCTCCTTTTTCGGTTGTCATTCAGGAATCAGAGAAAGGGTCATGGCATTTCCCGGTCTCATGCGAAAACAATGAAGAGTCTTCAAGAACTTGGATGTGTATTAGCAGACAAAGTATTTTAGATTCACCTAAGAGTAATGGGAAGATTCCTTAG

Protein Analysis

528

Amino Acids

59.23

Weight (kDa)

5.98

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 1 - 133 1.8e-57 Pentacotripeptide-repeat region of PRORP
PRORP PF16953 177 - 412 1.4e-58 Protein-only RNase P
RNase_Zc3h12a PF11977 241 - 373 1.7e-06 Zc3h12a-like Ribonuclease NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 515
AccI GTMKAC 1 cut(s) 1397
AcsI RAATTY 2 cut(s) 949, 1057
AcuI CTGAAG 3 cut(s) 324, 958, 1439
AfaI GTAC 3 cut(s) 186, 221, 1357
AfiI CCNNNNNNNGG 1 cut(s) 1204
AgeI ACCGGT 1 cut(s) 21
AhdI GACNNNNNGTC 1 cut(s) 1388
AjnI CCWGG 1 cut(s) 1249
Alw21I GWGCWC 2 cut(s) 47, 513
Alw26I GTCTC 7 cut(s) 30, 194, 953, 1156, 1323, 1440, 1495
AoxI GGCC 1 cut(s) 1139
ApoI RAATTY 2 cut(s) 949, 1057
ArsI GACNNNNNNTTYG 4 cut(s) 263, 295, 1322, 1354
AsiGI ACCGGT 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 718
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 133, 1140, 1390
AsuC2I CCSGG 1 cut(s) 1487
AsuHPI GGTGA 5 cut(s) 386, 707, 716, 1187, 1551
AvaII GGWCC 2 cut(s) 133, 1390
BanII GRGCYC 2 cut(s) 47, 1047
BarI GAAGNNNNNNTAC 2 cut(s) 1097, 1129
BbsI GAAGAC 3 cut(s) 944, 964, 1506
Bbv12I GWGCWC 2 cut(s) 47, 513
BccI CCATC 3 cut(s) 176, 1022, 1061
BceAI ACGGC 2 cut(s) 15, 1417
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 1 cut(s) 1251
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 1 cut(s) 1487
BcoDI GTCTC 7 cut(s) 30, 194, 953, 1156, 1323, 1440, 1495
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 3 cut(s) 522, 850, 1020
BfuAI ACCTGC 1 cut(s) 515
BlpI GCTNAGC 2 cut(s) 229, 1290
BmcAI AGTACT 1 cut(s) 1357
Bme1390I CCNGG 2 cut(s) 1251, 1487
Bme18I GGWCC 2 cut(s) 133, 1390
BmeRI GACNNNNNGTC 1 cut(s) 1388
BmgT120I GGNCC 3 cut(s) 133, 1140, 1390
BmiI GGNNCC 2 cut(s) 1142, 1255
BmrFI CCNGG 2 cut(s) 1251, 1487
BmsI GCATC 3 cut(s) 151, 338, 723
BpiI GAAGAC 3 cut(s) 944, 964, 1506
Bpu1102I GCTNAGC 2 cut(s) 229, 1290
BpuEI CTTGAG 2 cut(s) 1016, 1280
BpuMI CCSGG 1 cut(s) 1487
BsaI GGTCTC 3 cut(s) 30, 1323, 1495
BsaJI CCNNGG 3 cut(s) 129, 274, 579
BsaWI WCCGGW 3 cut(s) 21, 1197, 1392
Bsc4I CCNNNNNNNGG 1 cut(s) 1204
Bse118I RCCGGY 2 cut(s) 21, 451
Bse1I ACTGG 3 cut(s) 177, 357, 995
BseBI CCWGG 1 cut(s) 1251
BseDI CCNNGG 3 cut(s) 129, 274, 579
BseGI GGATG 2 cut(s) 738, 1533
BseLI CCNNNNNNNGG 1 cut(s) 1204
BseMII CTCAG 4 cut(s) 153, 205, 243, 428
BseNI ACTGG 3 cut(s) 177, 357, 995
BseRI GAGGAG 2 cut(s) 89, 554
BshFI GGCC 1 cut(s) 1141
BshTI ACCGGT 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 47, 513
BsiSI CCGG 5 cut(s) 22, 452, 1198, 1393, 1487
BslI CCNNNNNNNGG 1 cut(s) 1204
BsmAI GTCTC 7 cut(s) 30, 194, 953, 1156, 1323, 1440, 1495
BsmBI CGTCTC 3 cut(s) 194, 1156, 1440
BsnI GGCC 1 cut(s) 1141
Bso31I GGTCTC 3 cut(s) 30, 1323, 1495
Bsp1286I GDGCHC 3 cut(s) 47, 513, 1047
Bsp143I GATC 2 cut(s) 13, 292
Bsp1720I GCTNAGC 2 cut(s) 229, 1290
BspANI GGCC 1 cut(s) 1141
BspCNI CTCAG 4 cut(s) 152, 204, 242, 429
BspLI GGNNCC 2 cut(s) 1142, 1255
BspMAI CTGCAG 2 cut(s) 526, 854
BspMI ACCTGC 1 cut(s) 515
BspQI GCTCTTC 2 cut(s) 52, 501
BspTNI GGTCTC 3 cut(s) 30, 1323, 1495
BsrFI RCCGGY 2 cut(s) 21, 451
BsrI ACTGG 3 cut(s) 177, 357, 995
BssAI RCCGGY 2 cut(s) 21, 451
BssECI CCNNGG 3 cut(s) 129, 274, 579
BssMI GATC 2 cut(s) 13, 292
BssNAI GTATAC 1 cut(s) 1398
BssT1I CCWWGG 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 1398
Bst2UI CCWGG 1 cut(s) 1251
Bst4CI ACNGT 4 cut(s) 275, 808, 1118, 1229
Bst6I CTCTTC 5 cut(s) 52, 107, 258, 501, 1503
BstAPI GCANNNNNTGC 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 197, 453
BstDEI CTNAG 9 cut(s) 139, 191, 229, 437, 737, 1290, 1348, 1563, 1584
BstDSI CCRYGG 2 cut(s) 274, 579
BstEII GGTNACC 1 cut(s) 1412
BstF5I GGATG 2 cut(s) 738, 1533
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 2 cut(s) 16, 295
BstMAI GTCTC 7 cut(s) 30, 194, 953, 1156, 1323, 1440, 1495
BstMBI GATC 2 cut(s) 13, 292
BstMWI GCNNNNNNNGC 5 cut(s) 149, 353, 457, 530, 1429
BstNI CCWGG 1 cut(s) 1251
BstPI GGTNACC 1 cut(s) 1412
BstSCI CCNGG 2 cut(s) 1249, 1485
BstSFI CTRYAG 3 cut(s) 522, 850, 1020
BstV2I GAAGAC 3 cut(s) 944, 964, 1506
BstZ17I GTATAC 1 cut(s) 1398
BsuRI GGCC 1 cut(s) 1141
BtgI CCRYGG 2 cut(s) 274, 579
BtsCI GGATG 2 cut(s) 738, 1533
BtsI GCAGTG 1 cut(s) 859
BtsIMutI CAGTG 3 cut(s) 184, 348, 859
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 2 cut(s) 197, 453
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 21, 451
Cfr13I GGNCC 3 cut(s) 133, 1140, 1390
CseI GACGC 1 cut(s) 1183
CsiI ACCWGGT 1 cut(s) 1249
Csp6I GTAC 3 cut(s) 185, 220, 1356
CspAI ACCGGT 1 cut(s) 21
CviAII CATG 7 cut(s) 117, 514, 779, 954, 1004, 1476, 1494
CviQI GTAC 3 cut(s) 185, 220, 1356
DdeI CTNAG 9 cut(s) 139, 191, 229, 437, 737, 1290, 1348, 1563, 1584
DpnI GATC 2 cut(s) 15, 294
DpnII GATC 2 cut(s) 13, 292
DriI GACNNNNNGTC 1 cut(s) 1388
Eam1104I CTCTTC 5 cut(s) 52, 107, 258, 501, 1503
Eam1105I GACNNNNNGTC 1 cut(s) 1388
EarI CTCTTC 5 cut(s) 52, 107, 258, 501, 1503
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 47, 1047
Eco31I GGTCTC 3 cut(s) 30, 1323, 1495
Eco32I GATATC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 133, 1390
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 3 cut(s) 324, 958, 1439
Eco91I GGTNACC 1 cut(s) 1412
EcoICRI GAGCTC 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 1412
EcoRI GAATTC 1 cut(s) 949
EcoRII CCWGG 1 cut(s) 1249
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 47, 1047
ErhI CCWWGG 1 cut(s) 129
Esp3I CGTCTC 3 cut(s) 194, 1156, 1440
FaeI CATG 7 cut(s) 120, 517, 782, 957, 1007, 1479, 1497
FatI CATG 7 cut(s) 116, 513, 778, 953, 1003, 1475, 1493
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 13
FblI GTMKAC 1 cut(s) 1397
FokI GGATG 2 cut(s) 745, 1540
FriOI GRGCYC 2 cut(s) 47, 1047
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 450
HaeIII GGCC 1 cut(s) 1141
HapII CCGG 5 cut(s) 22, 452, 1198, 1393, 1487
HgaI GACGC 1 cut(s) 1183
HhaI GCGC 1 cut(s) 451
Hin1II CATG 7 cut(s) 120, 517, 782, 957, 1007, 1479, 1497
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 1421
HinfI GANTC 8 cut(s) 427, 908, 1094, 1201, 1460, 1511, 1556, 1579
HpaII CCGG 5 cut(s) 22, 452, 1198, 1393, 1487
HphI GGTGA 5 cut(s) 386, 707, 716, 1187, 1551
Hpy166II GTNNAC 1 cut(s) 1398
Hpy188I TCNGA 4 cut(s) 13, 438, 724, 1465
Hpy188III TCNNGA 8 cut(s) 35, 51, 283, 587, 986, 1171, 1457, 1518
Hpy8I GTNNAC 1 cut(s) 1398
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 64, 559, 1099
HpyCH4III ACNGT 4 cut(s) 275, 808, 1118, 1229
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 7 cut(s) 146, 164, 524, 533, 852, 1156, 1241
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 353, 457, 530, 1429
HpyF3I CTNAG 9 cut(s) 139, 191, 229, 437, 737, 1290, 1348, 1563, 1584
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 7 cut(s) 120, 517, 782, 957, 1007, 1479, 1497
HspAI GCGC 1 cut(s) 449
KroI GCCGGC 1 cut(s) 451
KroNI GCCGGC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 292
LguI GCTCTTC 2 cut(s) 52, 501
LmnI GCTCC 2 cut(s) 125, 1031
LweI GCATC 3 cut(s) 151, 338, 723
MabI ACCWGGT 1 cut(s) 1249
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 5 cut(s) 32, 334, 1223, 1309, 1412
MalI GATC 2 cut(s) 15, 294
MboI GATC 2 cut(s) 13, 292
MhlI GDGCHC 3 cut(s) 47, 513, 1047
MluCI AATT 6 cut(s) 112, 660, 714, 949, 1057, 1146
MlyI GAGTC 1 cut(s) 1520
MmeI TCCRAC 2 cut(s) 394, 459
MroNI GCCGGC 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 718
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 5 cut(s) 22, 452, 1198, 1393, 1487
MspR9I CCNGG 2 cut(s) 1251, 1487
MvaI CCWGG 1 cut(s) 1251
MwoI GCNNNNNNNGC 5 cut(s) 149, 353, 457, 530, 1429
NaeI GCCGGC 1 cut(s) 453
NciI CCSGG 1 cut(s) 1487
NdeI CATATG 1 cut(s) 445
NdeII GATC 2 cut(s) 13, 292
NgoMIV GCCGGC 1 cut(s) 451
NlaIII CATG 7 cut(s) 120, 517, 782, 957, 1007, 1479, 1497
NlaIV GGNNCC 2 cut(s) 1142, 1255
NmuCI GTSAC 2 cut(s) 32, 1309
PciSI GCTCTTC 2 cut(s) 52, 501
PdiI GCCGGC 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 718
PfeI GAWTC 7 cut(s) 427, 908, 1094, 1201, 1460, 1556, 1579
PinAI ACCGGT 1 cut(s) 21
PleI GAGTC 1 cut(s) 1519
PpsI GAGTC 1 cut(s) 1519
PpuMI RGGWCCY 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 1249
PspEI GGTNACC 1 cut(s) 1412
PspGI CCWGG 1 cut(s) 1249
PspN4I GGNNCC 2 cut(s) 1142, 1255
PspPI GGNCC 3 cut(s) 133, 1140, 1390
PspPPI RGGWCCY 1 cut(s) 133
PsrI GAACNNNNNNTAC 2 cut(s) 289, 321
PstI CTGCAG 2 cut(s) 526, 854
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 3 cut(s) 186, 221, 1357
RsaNI GTAC 3 cut(s) 185, 220, 1356
RseI CAYNNNNRTG 1 cut(s) 777
SacI GAGCTC 1 cut(s) 47
SapI GCTCTTC 2 cut(s) 52, 501
SaqAI TTAA 1 cut(s) 396
Sau3AI GATC 2 cut(s) 13, 292
Sau96I GGNCC 3 cut(s) 133, 1140, 1390
ScaI AGTACT 1 cut(s) 1357
SchI GAGTC 1 cut(s) 1520
ScrFI CCNGG 2 cut(s) 1251, 1487
SduI GDGCHC 3 cut(s) 47, 513, 1047
SexAI ACCWGGT 1 cut(s) 1249
SfaNI GCATC 3 cut(s) 151, 338, 723
SfcI CTRYAG 3 cut(s) 522, 850, 1020
SinI GGWCC 2 cut(s) 133, 1390
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 2 cut(s) 995, 1295
SmoI CTYRAG 2 cut(s) 995, 1295
Sse9I AATT 6 cut(s) 112, 660, 714, 949, 1057, 1146
SspI AATATT 1 cut(s) 1039
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 1249, 1485
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 4 cut(s) 275, 808, 1118, 1229
TaiI ACGT 1 cut(s) 190
TaqI TCGA 3 cut(s) 282, 425, 586
TasI AATT 6 cut(s) 112, 660, 714, 949, 1057, 1146
TatI WGTACW 1 cut(s) 1355
TfiI GAWTC 7 cut(s) 427, 908, 1094, 1201, 1460, 1556, 1579
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 3 cut(s) 184, 348, 859
TseFI GTSAC 2 cut(s) 32, 1309
Tsp45I GTSAC 2 cut(s) 32, 1309
TspDTI ATGAA 5 cut(s) 105, 942, 962, 1118, 1521
TspRI CASTG 3 cut(s) 184, 348, 859
VpaK11BI GGWCC 2 cut(s) 133, 1390
XapI RAATTY 2 cut(s) 949, 1057
XmiI GTMKAC 1 cut(s) 1397
XmnI GAANNNNTTC 1 cut(s) 718
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 1357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.