Rorug05G0209700
NAC Family

proteinaceous RNase P

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
20949025 .. 20952831
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0209700.1

Sequence Viewer

Length: 1263 bp
ATGAGTGGAGGGCTTCGTTCAAGCGTGAAGTCGTACCTTAATGCGAAACGCCTCCCTTTCTCTGGGGAAATAGATACAGTGAATGAGACAAATGAGACCATCAATCGCAATTTCAGTGCACTCCAAGCTGCTGTTGATTCCGTGGATAAGAAGAAACCGCAAGAGAAAAGCATTGCTTCGACTTCATATCAGCTCATGCCTTCAACTTCGCGGAGAGAAAGGATCTTGCTAAAAAGATTCCTCTTTAATGAACTGAAAGTAGCAACCTGGAACTTTCATCCTCATAATAAGCTGGGTGAAGGTGGTTTTGGTTCTGTTTTTAAGGGGTGGCTTGATGACAATACATTCCCCGGTACTGGCATGTTAATTGCTGTGAAGAGGATTAACCGAGAAGGTTTACAGGGTCACAAGGAATGGTTGACAGAAATATACTACCTAGGAAGGCTGCGCCATCCAAATCTTGTGACATTGTTGGGTTATTGCTTCGAGGATGATTGCCGGCTTCTGGTGTATGAATTTATGGCTGGTGGTAGCTTGGATACTCATCTGTATGGAAGAGCTTCTTCCCTTCAACCACTCTCGTGGATCCTGCGTATGAAGATTGCCCTTGGTGCTGCCAACTCTCTAGCATTTATTCACAGTGGTGAGGGAAAAGTGATCCATCGTGACGTCAAAAGTTCTAATATCTTACTGGATTCAAACTACAGTGCCAAACTCTCTGATTTTGGTTTTGCTAAGGATGGACCAGCAGGTGATAAAAGCCATGTCTCAACATGGGTGATGGGGACACATGGGTATGCAGCTCCTGAGTATGTTGCTACAGGTCATTTAACCCGCAAGACTGACGTATATGGTTTTGGAGTTGTTATGCTCGAATTGTTGACTGGAAAACCAGTTCTTGACACTAGCCGGCCAACCAGGGAACGCAATTTAGTCGAATGGGCCAGACCTTACTTTGCTAGCAAACGCAGGGTTCTTAAAATTTTTGATGCTCGTATTAAAGGCCAGTATTCTGTGGCTGCAGCTCGTAAAGCAGCTAACCTTACAAATCAATGCTTATCAACAGAACCCGAGTTGAGGCCAAACATGAATGAGGTGGTAAAAGCGTTGGAGCAGCTTCAGGAATCCGGTAACAATGAGGGTTCAGGAATCTCTCACAACGAGCCTCGCCAATCTCCTTATTCCAATTCAAACAGTGCCAAATCAAGCTGGAGAAGCTGGATCAGCTTCAGGTCATCTTCTTCCCACAGCTACATAAGATAG

Protein Analysis

420

Amino Acids

46.98

Weight (kDa)

9.59

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 93 - 368 6.4e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 95 - 370 3.8e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 740
AatII GACGTC 1 cut(s) 672
Acc36I ACCTGC 1 cut(s) 740
AccII CGCG 1 cut(s) 211
AciI CCGC 3 cut(s) 158, 211, 835
AclWI GGATC 5 cut(s) 230, 580, 593, 652, 1229
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 2 cut(s) 515, 981
AcuI CTGAAG 2 cut(s) 1103, 1213
AcyI GRCGYC 1 cut(s) 669
AfaI GTAC 2 cut(s) 35, 355
AfiI CCNNNNNNNGG 4 cut(s) 62, 356, 505, 1077
AgsI TTSAA 5 cut(s) 21, 204, 572, 699, 1191
AjnI CCWGG 2 cut(s) 266, 917
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AleI CACNNNNGTG 2 cut(s) 580, 642
AloI GAACNNNNNNTCC 2 cut(s) 879, 911
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 3 cut(s) 80, 89, 772
Alw44I GTGCAC 1 cut(s) 117
AlwI GGATC 5 cut(s) 230, 580, 593, 652, 1229
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 1070
AoxI GGCC 4 cut(s) 911, 942, 1003, 1079
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 8 cut(s) 128, 445, 614, 800, 1019, 1022, 1034, 1114
ApoI RAATTY 2 cut(s) 515, 981
Asp700I GAANNNNTTC 1 cut(s) 559
AspA2I CCTAGG 1 cut(s) 436
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 2 cut(s) 743, 942
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 4 cut(s) 308, 656, 764, 790
AsuNHI GCTAGC 1 cut(s) 959
AvaI CYCGRG 1 cut(s) 1070
AvaII GGWCC 1 cut(s) 743
AvrII CCTAGG 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 121
BamHI GGATCC 1 cut(s) 585
BauI CACGAG 1 cut(s) 580
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 8 cut(s) 115, 432, 601, 812, 1006, 1034, 1046, 1126
BccI CCATC 5 cut(s) 107, 459, 669, 734, 775
BcgI CGANNNNNNTGC 2 cut(s) 916, 950
BciT130I CCWGG 2 cut(s) 268, 919
BciVI GTATCC 1 cut(s) 532
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 3 cut(s) 80, 89, 772
BfaI CTAG 4 cut(s) 437, 626, 906, 960
BfmI CTRYAG 3 cut(s) 703, 819, 1020
BfuAI ACCTGC 1 cut(s) 740
BfuI GTATCC 1 cut(s) 532
BisI GCNGC 8 cut(s) 129, 446, 615, 801, 1020, 1023, 1035, 1115
BlnI CCTAGG 1 cut(s) 436
BlsI GCNGC 8 cut(s) 130, 447, 616, 802, 1021, 1024, 1036, 1116
Bme1390I CCNGG 3 cut(s) 268, 351, 919
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 1 cut(s) 1070
BmgT120I GGNCC 2 cut(s) 743, 942
BmiI GGNNCC 1 cut(s) 587
BmrFI CCNGG 3 cut(s) 268, 351, 919
BmsI GCATC 1 cut(s) 979
BmtI GCTAGC 1 cut(s) 963
BpmI CTGGAG 1 cut(s) 1231
Bpu10I CCTNAGC 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 5 cut(s) 141, 349, 436, 607, 918
BsaWI WCCGGW 1 cut(s) 1127
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 356, 505, 1077
Bse118I RCCGGY 2 cut(s) 498, 909
Bse1I ACTGG 5 cut(s) 361, 696, 889, 893, 1006
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 2 cut(s) 268, 919
BseDI CCNNGG 5 cut(s) 141, 349, 436, 607, 918
BseGI GGATG 4 cut(s) 277, 451, 496, 745
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 4 cut(s) 62, 356, 505, 1077
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 5 cut(s) 361, 696, 889, 893, 1006
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 8 cut(s) 115, 432, 601, 812, 1006, 1034, 1046, 1126
BseYI CCCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 913, 944, 1005, 1081
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 1070
BsiSI CCGG 4 cut(s) 351, 499, 910, 1128
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 4 cut(s) 62, 356, 505, 1077
BsmAI GTCTC 3 cut(s) 80, 89, 772
BsmFI GGGAC 1 cut(s) 799
BsnI GGCC 4 cut(s) 913, 944, 1005, 1081
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 1070
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 4 cut(s) 222, 585, 657, 1221
BspACI CCGC 3 cut(s) 158, 211, 835
BspANI GGCC 4 cut(s) 913, 944, 1005, 1081
BspCNI CTCAG 1 cut(s) 799
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 587
BspMAI CTGCAG 1 cut(s) 1024
BspMI ACCTGC 1 cut(s) 740
BspOI GCTAGC 1 cut(s) 963
BspPI GGATC 5 cut(s) 230, 580, 593, 652, 1229
BspQI GCTCTTC 1 cut(s) 550
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 2 cut(s) 498, 909
BsrI ACTGG 5 cut(s) 361, 696, 889, 893, 1006
BssAI RCCGGY 2 cut(s) 498, 909
BssECI CCNNGG 5 cut(s) 141, 349, 436, 607, 918
BssMI GATC 4 cut(s) 222, 585, 657, 1221
BssNI GRCGYC 1 cut(s) 669
BssSI CACGAG 1 cut(s) 580
BssT1I CCWWGG 2 cut(s) 436, 607
Bst2BI CACGAG 1 cut(s) 580
Bst2UI CCWGG 2 cut(s) 268, 919
Bst4CI ACNGT 4 cut(s) 79, 641, 707, 1196
Bst6I CTCTTC 2 cut(s) 371, 550
BstACI GRCGYC 1 cut(s) 669
BstC8I GCNNGC 3 cut(s) 500, 911, 961
BstDEI CTNAG 2 cut(s) 735, 807
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 4 cut(s) 277, 451, 496, 745
BstFNI CGCG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 4 cut(s) 225, 588, 660, 1224
BstMAI GTCTC 3 cut(s) 80, 89, 772
BstMBI GATC 4 cut(s) 222, 585, 657, 1221
BstMWI GCNNNNNNNGC 5 cut(s) 125, 611, 1031, 1215, 1224
BstNI CCWGG 2 cut(s) 268, 919
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 3 cut(s) 266, 349, 917
BstSFI CTRYAG 3 cut(s) 703, 819, 1020
BstSLI GKGCMC 1 cut(s) 121
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 8 cut(s) 115, 432, 601, 812, 1006, 1034, 1046, 1126
BstX2I RGATCY 2 cut(s) 222, 585
BstXI CCANNNNNNTGG 1 cut(s) 582
BstYI RGATCY 2 cut(s) 222, 585
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 4 cut(s) 913, 944, 1005, 1081
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 277, 451, 496, 745
BtsIMutI CAGTG 5 cut(s) 84, 121, 646, 712, 1201
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 3 cut(s) 500, 911, 961
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 1 cut(s) 450
Cfr10I RCCGGY 2 cut(s) 498, 909
Cfr13I GGNCC 2 cut(s) 743, 942
Csp6I GTAC 2 cut(s) 34, 354
CviAII CATG 6 cut(s) 196, 361, 764, 774, 791, 1087
CviQI GTAC 2 cut(s) 34, 354
DdeI CTNAG 2 cut(s) 735, 807
DpnI GATC 4 cut(s) 224, 587, 659, 1223
DpnII GATC 4 cut(s) 222, 585, 657, 1221
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 2 cut(s) 371, 550
EarI CTCTTC 2 cut(s) 371, 550
Eco130I CCWWGG 2 cut(s) 436, 607
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 743
Eco57I CTGAAG 2 cut(s) 1103, 1213
Eco88I CYCGRG 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 266, 917
EcoT14I CCWWGG 2 cut(s) 436, 607
ErhI CCWWGG 2 cut(s) 436, 607
FaeI CATG 6 cut(s) 199, 364, 767, 777, 794, 1090
FalI AAGNNNNNCTT 4 cut(s) 160, 192, 547, 579
FaqI GGGAC 1 cut(s) 799
FatI CATG 6 cut(s) 195, 360, 763, 773, 790, 1086
FauI CCCGC 1 cut(s) 842
Fnu4HI GCNGC 8 cut(s) 129, 446, 615, 801, 1020, 1023, 1035, 1115
FokI GGATG 4 cut(s) 264, 438, 503, 752
Fsp4HI GCNGC 8 cut(s) 129, 446, 615, 801, 1020, 1023, 1035, 1115
FspBI CTAG 4 cut(s) 437, 626, 906, 960
GlaI GCGC 1 cut(s) 449
GluI GCNGC 8 cut(s) 129, 446, 615, 801, 1020, 1023, 1035, 1115
GsaI CCCAGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 1231
HaeIII GGCC 4 cut(s) 913, 944, 1005, 1081
HapII CCGG 4 cut(s) 351, 499, 910, 1128
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 669
Hin1II CATG 6 cut(s) 199, 364, 767, 777, 794, 1090
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 2 cut(s) 420, 882
HindII GTYRAC 2 cut(s) 420, 882
HinfI GANTC 5 cut(s) 137, 237, 695, 1124, 1149
HpaII CCGG 4 cut(s) 351, 499, 910, 1128
HphI GGTGA 4 cut(s) 308, 656, 764, 790
Hpy166II GTNNAC 4 cut(s) 119, 398, 420, 882
Hpy188I TCNGA 1 cut(s) 721
Hpy188III TCNNGA 5 cut(s) 665, 806, 899, 1121, 1146
Hpy8I GTNNAC 4 cut(s) 119, 398, 420, 882
HpyAV CCTTC 5 cut(s) 210, 293, 386, 435, 578
HpyCH4III ACNGT 4 cut(s) 79, 641, 707, 1196
HpyCH4IV ACGT 2 cut(s) 669, 846
HpyCH4V TGCA 3 cut(s) 119, 800, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 611, 1031, 1215, 1224
HpyF3I CTNAG 2 cut(s) 735, 807
HpySE526I ACGT 2 cut(s) 669, 846
Hsp92I GRCGYC 1 cut(s) 669
Hsp92II CATG 6 cut(s) 199, 364, 767, 777, 794, 1090
HspAI GCGC 1 cut(s) 448
KroI GCCGGC 2 cut(s) 498, 909
KroNI GCCGGC 2 cut(s) 500, 911
Kzo9I GATC 4 cut(s) 222, 585, 657, 1221
LguI GCTCTTC 1 cut(s) 550
LmnI GCTCC 2 cut(s) 808, 1111
Lsp1109I GCAGC 8 cut(s) 115, 432, 601, 812, 1006, 1034, 1046, 1126
LweI GCATC 1 cut(s) 979
MaeI CTAG 4 cut(s) 437, 626, 906, 960
MaeII ACGT 2 cut(s) 669, 846
MaeIII GTNAC 4 cut(s) 404, 463, 665, 1130
MalI GATC 4 cut(s) 224, 587, 659, 1223
MboI GATC 4 cut(s) 222, 585, 657, 1221
MboII GAAGA 7 cut(s) 163, 388, 555, 567, 610, 1230, 1233
MflI RGATCY 2 cut(s) 222, 585
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 7 cut(s) 109, 366, 515, 875, 928, 981, 1186
MmeI TCCRAC 1 cut(s) 1089
MroNI GCCGGC 2 cut(s) 498, 909
MroXI GAANNNNTTC 1 cut(s) 559
MseI TTAA 8 cut(s) 39, 246, 321, 365, 384, 830, 978, 999
MslI CAYNNNNRTG 4 cut(s) 549, 580, 642, 795
MspI CCGG 4 cut(s) 351, 499, 910, 1128
MspR9I CCNGG 3 cut(s) 268, 351, 919
MvaI CCWGG 2 cut(s) 268, 919
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 5 cut(s) 125, 611, 1031, 1215, 1224
NaeI GCCGGC 2 cut(s) 500, 911
NciI CCSGG 1 cut(s) 351
NdeII GATC 4 cut(s) 222, 585, 657, 1221
NgoMIV GCCGGC 2 cut(s) 498, 909
NheI GCTAGC 1 cut(s) 959
NlaIII CATG 6 cut(s) 199, 364, 767, 777, 794, 1090
NlaIV GGNNCC 1 cut(s) 587
NmuCI GTSAC 3 cut(s) 404, 463, 665
NspI RCATGY 1 cut(s) 364
OliI CACNNNNGTG 2 cut(s) 580, 642
PaqCI CACCTGC 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 550
PdiI GCCGGC 2 cut(s) 500, 911
PdmI GAANNNNTTC 1 cut(s) 559
PfeI GAWTC 5 cut(s) 137, 237, 695, 1124, 1149
PkrI GCNGC 8 cut(s) 130, 447, 616, 802, 1021, 1024, 1036, 1116
Psp6I CCWGG 2 cut(s) 266, 917
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 266, 917
PspN4I GGNNCC 1 cut(s) 587
PspPI GGNCC 2 cut(s) 743, 942
PstI CTGCAG 1 cut(s) 1024
PstNI CAGNNNCTG 1 cut(s) 806
PsuI RGATCY 2 cut(s) 222, 585
RsaI GTAC 2 cut(s) 35, 355
RsaNI GTAC 2 cut(s) 34, 354
RseI CAYNNNNRTG 4 cut(s) 549, 580, 642, 795
SapI GCTCTTC 1 cut(s) 550
SaqAI TTAA 8 cut(s) 39, 246, 321, 365, 384, 830, 978, 999
SatI GCNGC 8 cut(s) 129, 446, 615, 801, 1020, 1023, 1035, 1115
Sau3AI GATC 4 cut(s) 222, 585, 657, 1221
Sau96I GGNCC 2 cut(s) 743, 942
ScrFI CCNGG 3 cut(s) 268, 351, 919
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 1 cut(s) 979
SfcI CTRYAG 3 cut(s) 703, 819, 1020
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 4 cut(s) 549, 580, 642, 795
Sse9I AATT 7 cut(s) 109, 366, 515, 875, 928, 981, 1186
SsiI CCGC 3 cut(s) 158, 211, 835
SspMI CTAG 4 cut(s) 437, 626, 906, 960
StyD4I CCNGG 3 cut(s) 266, 349, 917
StyI CCWWGG 2 cut(s) 436, 607
TaaI ACNGT 4 cut(s) 79, 641, 707, 1196
TaiI ACGT 2 cut(s) 672, 849
TaqI TCGA 4 cut(s) 179, 486, 873, 936
TasI AATT 7 cut(s) 109, 366, 515, 875, 928, 981, 1186
TfiI GAWTC 5 cut(s) 137, 237, 695, 1124, 1149
Tru1I TTAA 8 cut(s) 39, 246, 321, 365, 384, 830, 978, 999
Tru9I TTAA 8 cut(s) 39, 246, 321, 365, 384, 830, 978, 999
TscAI CASTG 5 cut(s) 84, 121, 646, 712, 1201
TseFI GTSAC 3 cut(s) 404, 463, 665
TseI GCWGC 8 cut(s) 128, 445, 614, 800, 1019, 1022, 1034, 1114
Tsp45I GTSAC 3 cut(s) 404, 463, 665
TspDTI ATGAA 6 cut(s) 174, 264, 266, 528, 611, 1103
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 5 cut(s) 84, 121, 646, 712, 1201
VneI GTGCAC 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 743
XapI RAATTY 2 cut(s) 515, 981
XceI RCATGY 1 cut(s) 364
XmaJI CCTAGG 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 559
XspI CTAG 4 cut(s) 437, 626, 906, 960
ZraI GACGTC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.