Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004366

Physical Location & Seq

Genomic Coordinates Reverse (-)

20954760 .. 21333467

Gene Structure 378708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0209800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGGAGCGCAGACTTTTGAAATCTCAGAATTTGCCGGGAAAACTCCCGCCAGAGTTGATCAAGCTCCCCTATCTCCAAGAAATTGACCTCACCCGCAACTATCTGAATGGCACCATCCCTCCAGAATGGGGCTCCCTGCCACTAGTTAAAATTGGTCTTGGTGCAAACCGTTTGACAGGTTCAATCCCTGTTGAGCTAGGAAAAATCACCAAGCTCGAAAGTTTGACCATCGATTTCAATAGTTTCTCTGGAGTTCTTCCTGCGGAGCTTGGAAATTTGTCTAGCATAAAAAGAATGTCTCTTACCTCGAACAATTTTACCGGAGAGTTGCCAGAGACATTTGCAAAGCTTACCAACTTAACTGAATTTTGGATTAGTGACAGTTCCTTTTCTGGGAAGATACCTGATTTTATTGAGAGCTGGACAAATCTTAAGACACTAGTGATTCAGGCTAGTGGTTTTACAGGGCCAATTCCTTCCGGCATTTCTCTCTTGACAAGATTAAAAGACCTGAGAATTACTGACTTGAATGGATCTGAATCATCCTTTCCTGTACTTGATAATATGACAAGCCTGGAGACATTGGTGTTGCGGAACTGCAATATTAGCGGGCAGCTACCTGAATATCTTGAGAACTTGTCGACTTTGAATATTTTAGACCTTAGTTTCAATAAGCTAACTGGAGATATCCCAAACAGCTTTGCTGGTCTAGGTCTGAAGAACATGTTCTTAACTGGAAACATGCTGACCGGAACTGTGCCAGCTGATTGGATGACAGCTGATTGGATGAAAGACAAGAGCATTGATCTTTCATATAACAAATTCACCATGGACTCAAGTGATGAGGAGTGTGAACCACTAGAGGGCTTGAACTTGTTTGCAAGCTCTTCAGGTGGCAATACTTCATCTGTTTCATGTTTACCGCTTGAAAAATGTCCAACAGGCACATACAAACCTGAATTTATGCACAAGTTAAAGCCTGATCTTTTCTTCTGGGCCCATCTAAAGATTGACACTCTTTTTGCTCTTGGCATAGCTTTGTACGTTCTTCATATAAATTGTGGTGGACAAGAAGTAACCCGCTATGAAAATACCACAAGACCCATTACCGCAACATATGAGAAAGATACTGATAAAGCCGGGCCTTCATCAGTTTACCAGATCACAAATTGGACATCAAGCACCACTGGCTACTTCGCTAATGATAATCGTCCTAATAAAGGAACCTATATCTGGACTACTAATTCATCTGGACTCACTATGGCCAATCCTGAGTTGTACATGAATGCACGCCTTTCTCCTATTTCTCTAACTTACTATGGGTATTGTCTCGGAAATGGAAGCTACACAGTAAACCTCCACTTTGCAGAGATAATATTTACAAATGACACGACATATAGTAGCCTGGGAAGACGTGTATTTGATATATACATTCAGGGGTCACTAGTGGTCAAGGATTTCAATATTGCACATGAAGCAGGTGGCTTTCGTAAGGAAGTCACAAAAAATTTCACTGCTATCGTAACTGATAGTACTTTGGAGATCCGTTTATTCTGGGCTGGGAAAGGGACAACAGGTGTCCCTTACAAAGGAGACTATGGTCCTCTTATATCTGCTATCTCTATAGTTTCTGACTTTCCACCCCATCAAGAAACCTCTGGGAGCAGTGGTATATCTGCAGGTGCAGTGGTTGGAATCGTGGCCGGAGGAGTCTTCATTATATTACTGGTTTTAGGTATTCTCTGGTGGAAAGGCTTCATAGGACCAGCAAATACTTTAGAACAAGATTTGAAGGGTGTGGACCTGCAAACCAGCAGATTTACCTTGAGGCAAATAAAAACTGCCACAAACAACTTTGACATATCCAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCCTTCTATCAGACAACACTGCAATTGCTGTTAAGAAGCTTTCAGCCAAATCGAAGCAAGGGAATCGTGAATTTGTGAATGAGATAGGCATGATTTCTGCTCTGCAACACCCTCACCTTGTCAAGCTTTATGGATGCTGTATTGAAGGAAATAACTTGTTGCTTGTCTATGAGTACATGGAAAACAATAGTCTCGCACGTGCTCTATTTGAAAGTCAGGTCATGAAGCTGGACTGGCCAACAAGGCATAGGATTTGTGTTGGTATAGCCAGAGGTTTGGCTTACCTCCATGAGGAATCAAGGTTGAAGATCGTTCATAGAGACATCAAAGCTACTAATGTGCTACTTGATAAAAATCTTTTCCCAAAGATATCTGACTTTGGATTGGCCAAGCTTGATGAAGACGATAATTCCCACATAAGCACTCGGATTGCTGGAACTTTTGGATATATGGCACCTGAATATGCAATGCGAGATCACTTGACCCCCAGAAGCGATGTGTACAGTTTTGGAGTTGTTCTGCTCGAAATCTTGTCAGGCCGACGAGCAATTGACATAAGCCGGCCAGTGGCAGAACATGATTTAGTTCGGTTTGCTTTTACCAAGGTTCCCAGGAAACAAAGAGTTCACCAAATTATTGACATTCGTATGGAAGGCCACTACTCTAAGTCTAGAGCTGTCAAAGCACTTAAACTTGCAAGACAATGCCTGTCAGTGAACTCCAAGCTTAGGCCAGACATGCATCAGGTGATAGAAATATTGGAGAACCTTCAGTCCTCTGGTGACAGGGAAGCCAGCCTCTGGGACCTCTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

907

Amino Acids

100.5

Weight (kDa)

6.65

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	13 - 173	3.4e-07	Leucine-rich repeat region
LRR_14	PF23598	133 - 228	1.9e-06	Leucine-rich repeat region
LRR_8	PF13855	191 - 249	1.4e-07	Leucine rich repeat
Malectin	PF11721	349 - 540	5.8e-39	Malectin domain
Pkinase	PF00069	620 - 886	2.2e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	621 - 889	4.3e-51	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16650 AT2G16650 AT4G21900 AT5G60430 AT5G60430 AT5G60430 AT5G60430
fragaria_vesca	FvH4_3g24550 FvH4_3g24550 FvH4_3g24550
malus_domestica	MD03G1141100.v1.1 MD11G1171700.v1.1
prunus_persica	Prupe.6G126500_v2.0.a1
pyrus_communis	pycom03g09600
rosa_chinensis	RchiOBHm_Chr5g0043991
rosa_laevigata	RLG00000034233 RLG00000034235
rosa_multiflora	Rmu_sc0001157.1_g000006
rosa_roxburghii	Rroxscaffold_1G00037010
rosa_rugosa	Rorug05G0209600 Rorug05G0209700 Rorug05G0209700 Rorug05G0209800 Rorug05G0209900 Rorug05G0210000 Rorug05G0210100.1 Rorug05G0210200
rosa_samantha	Rh5AG294100 Rh5BG302500 Rh5CG329700 Rh5DG311300
rosa_wichuraiana	Rw5G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1469, 1670
Acc36I	ACCTGC	3 cut(s)	1469, 1670, 1812
AccB1I	GGYRCC	2 cut(s)	110, 2359
AccB7I	CCANNNNNTGG	1 cut(s)	2706
AccI	GTMKAC	1 cut(s)	641
AciI	CCGC	8 cut(s)	47, 94, 263, 592, 609, 923, 1081, 1110
AclWI	GGATC	2 cut(s)	541, 1537
AcoI	YGGCCR	5 cut(s)	1263, 1701, 2141, 2292, 2468
AcsI	RAATTY	7 cut(s)	28, 274, 365, 821, 959, 1507, 1976
AcuI	CTGAAG	3 cut(s)	737, 873, 2660
AcvI	CACGTG	1 cut(s)	2105
AfaI	GTAC	6 cut(s)	555, 1043, 1280, 1534, 2081, 2408
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	2 cut(s)	723, 1414
AhlI	ACTAGT	3 cut(s)	142, 439, 1444
AjiI	CACGTC	1 cut(s)	1415
AjnI	CCWGG	3 cut(s)	573, 1404, 2516
AjuI	GAANNNNNNNTTGG	2 cut(s)	1872, 1904
AloI	GAACNNNNNNTCC	2 cut(s)	2663, 2695
Alw21I	GWGCWC	1 cut(s)	2110
Alw26I	GTCTC	7 cut(s)	303, 329, 572, 1334, 1587, 2102, 2220
AlwI	GGATC	2 cut(s)	541, 1537
AlwNI	CAGNNNCTG	1 cut(s)	2706
ApaI	GGGCCC	1 cut(s)	1000
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	7 cut(s)	28, 274, 365, 821, 959, 1507, 1976
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
Asp700I	GAANNNNTTC	2 cut(s)	725, 1754
AspLEI	GCGC	1 cut(s)	9
AsuC2I	CCSGG	2 cut(s)	36, 1141
AsuHPI	GGTGA	7 cut(s)	82, 199, 817, 2012, 2525, 2665, 2699
AvaII	GGWCC	5 cut(s)	1601, 1763, 1801, 1892, 2710
BaeGI	GKGCMC	1 cut(s)	1000
BalI	TGGCCA	3 cut(s)	1265, 2143, 2294
BanI	GGYRCC	2 cut(s)	110, 2359
BanII	GRGCYC	2 cut(s)	134, 1000
BbrPI	CACGTG	1 cut(s)	2105
BbsI	GAAGAC	3 cut(s)	1417, 1705, 2313
Bbv12I	GWGCWC	1 cut(s)	2110
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	4 cut(s)	122, 236, 1008, 1653
BcgI	CGANNNNNNTGC	2 cut(s)	1952, 1986
BciT130I	CCWGG	3 cut(s)	575, 1406, 2518
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	36, 1141
BcoDI	GTCTC	7 cut(s)	303, 329, 572, 1334, 1587, 2102, 2220
BcuI	ACTAGT	3 cut(s)	142, 439, 1444
BfaI	CTAG	9 cut(s)	143, 197, 282, 440, 453, 710, 860, 1445, 2577
BfmI	CTRYAG	2 cut(s)	1623, 1677
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	3 cut(s)	1469, 1670, 1812
BglI	GCCNNNNNGGC	1 cut(s)	2149
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
BmcAI	AGTACT	1 cut(s)	1534
Bme1390I	CCNGG	5 cut(s)	36, 575, 1141, 1406, 2518
Bme18I	GGWCC	5 cut(s)	1601, 1763, 1801, 1892, 2710
BmgBI	CACGTC	1 cut(s)	1415
BmiI	GGNNCC	7 cut(s)	112, 133, 998, 1225, 2361, 2514, 2711
BmrFI	CCNGG	5 cut(s)	36, 575, 1141, 1406, 2518
BmsI	GCATC	2 cut(s)	2030, 2656
BoxI	GACNNNNGTC	1 cut(s)	1599
BpiI	GAAGAC	3 cut(s)	1417, 1705, 2313
BpmI	CTGGAG	4 cut(s)	105, 270, 596, 702
Bpu10I	CCTNAGC	1 cut(s)	2633
BpuEI	CTTGAG	3 cut(s)	650, 820, 1846
BpuMI	CCSGG	2 cut(s)	36, 1141
Bsa29I	ATCGAT	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	2105
BsaBI	GATNNNNATC	2 cut(s)	538, 2259
BsaJI	CCNNGG	4 cut(s)	828, 1405, 2508, 2516
BsaWI	WCCGGW	2 cut(s)	320, 749
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 1654, 1684
Bse118I	RCCGGY	1 cut(s)	2466
Bse1I	ACTGG	6 cut(s)	685, 739, 1192, 1731, 2144, 2471
Bse3DI	GCAATG	1 cut(s)	2379
Bse8I	GATNNNNATC	2 cut(s)	538, 2259
BseBI	CCWGG	3 cut(s)	575, 1406, 2518
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	4 cut(s)	828, 1405, 2508, 2516
BseGI	GGATG	5 cut(s)	114, 542, 777, 792, 2045
BseJI	GATNNNNATC	2 cut(s)	538, 2259
BseMI	GCAATG	1 cut(s)	2379
BseMII	CTCAG	3 cut(s)	38, 503, 1263
BseNI	ACTGG	6 cut(s)	685, 739, 1192, 1731, 2144, 2471
BseRI	GAGGAG	2 cut(s)	860, 1722
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	1 cut(s)	625
BseYI	CCCAGC	1 cut(s)	1559
BsgI	GTGCAG	1 cut(s)	1704
BshNI	GGYRCC	2 cut(s)	110, 2359
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	2110
BsiSI	CCGG	7 cut(s)	35, 321, 480, 750, 1140, 1704, 2467
BslFI	GGGAC	2 cut(s)	1565, 1582
BsmAI	GTCTC	7 cut(s)	303, 329, 572, 1334, 1587, 2102, 2220
BsmFI	GGGAC	2 cut(s)	1565, 1582
BsmI	GAATGC	1 cut(s)	1291
Bsp120I	GGGCCC	1 cut(s)	996
Bsp1286I	GDGCHC	3 cut(s)	134, 1000, 2110
Bsp1407I	TGTACA	2 cut(s)	1278, 2406
Bsp143I	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
Bsp19I	CCATGG	1 cut(s)	828
BspACI	CCGC	8 cut(s)	47, 94, 263, 592, 609, 923, 1081, 1110
BspCNI	CTCAG	3 cut(s)	37, 504, 1264
BspDI	ATCGAT	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	2127
BspLI	GGNNCC	7 cut(s)	112, 133, 998, 1225, 2361, 2514, 2711
BspMAI	CTGCAG	1 cut(s)	1681
BspMI	ACCTGC	3 cut(s)	1469, 1670, 1812
BspPI	GGATC	2 cut(s)	541, 1537
BspQI	GCTCTTC	1 cut(s)	892
BspT107I	GGYRCC	2 cut(s)	110, 2359
BspTI	CTTAAG	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	2379
BsrFI	RCCGGY	1 cut(s)	2466
BsrGI	TGTACA	2 cut(s)	1278, 2406
BsrI	ACTGG	6 cut(s)	685, 739, 1192, 1731, 2144, 2471
BssAI	RCCGGY	1 cut(s)	2466
BssECI	CCNNGG	4 cut(s)	828, 1405, 2508, 2516
BssMI	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
BssT1I	CCWWGG	2 cut(s)	828, 2508
Bst2UI	CCWGG	3 cut(s)	575, 1406, 2518
Bst4CI	ACNGT	5 cut(s)	170, 383, 757, 1351, 2411
Bst6I	CTCTTC	1 cut(s)	892
BstAFI	CTTAAG	1 cut(s)	431
BstAUI	TGTACA	2 cut(s)	1278, 2406
BstBAI	YACGTR	1 cut(s)	2105
BstC8I	GCNNGC	6 cut(s)	611, 762, 883, 1291, 2468, 2701
BstDEI	CTNAG	6 cut(s)	24, 512, 662, 1272, 2571, 2633
BstDSI	CCRYGG	1 cut(s)	828
BstENI	CCTNNNNNAGG	3 cut(s)	1218, 1587, 2195
BstF5I	GGATG	5 cut(s)	114, 542, 777, 792, 2045
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	8 cut(s)	60, 536, 808, 985, 1164, 1545, 2217, 2383
BstMAI	GTCTC	7 cut(s)	303, 329, 572, 1334, 1587, 2102, 2220
BstMBI	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
BstMWI	GCNNNNNNNGC	7 cut(s)	606, 1188, 1475, 2140, 2149, 2588, 2644
BstNI	CCWGG	3 cut(s)	575, 1406, 2518
BstNSI	RCATGY	3 cut(s)	727, 745, 2647
BstPAI	GACNNNNGTC	1 cut(s)	1599
BstSCI	CCNGG	5 cut(s)	34, 573, 1139, 1404, 2516
BstSFI	CTRYAG	2 cut(s)	1623, 1677
BstSLI	GKGCMC	1 cut(s)	1000
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	3 cut(s)	1417, 1705, 2313
BstX2I	RGATCY	2 cut(s)	533, 1542
BstXI	CCANNNNNNTGG	2 cut(s)	768, 2182
BstYI	RGATCY	2 cut(s)	533, 1542
Bsu15I	ATCGAT	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	2415
BtrI	CACGTC	1 cut(s)	1415
BtsCI	GGATG	5 cut(s)	114, 542, 777, 792, 2045
BtsI	GCAGTG	4 cut(s)	1512, 1672, 1692, 1923
BtsIMutI	CAGTG	7 cut(s)	1185, 1512, 1672, 1692, 1923, 2478, 2625
BveI	ACCTGC	3 cut(s)	1469, 1670, 1812
Cac8I	GCNNGC	6 cut(s)	611, 762, 883, 1291, 2468, 2701
CaiI	CAGNNNCTG	1 cut(s)	2706
CciI	TCATGA	1 cut(s)	2127
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	2466
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	6 cut(s)	554, 1042, 1279, 1533, 2080, 2407
CviQI	GTAC	6 cut(s)	554, 1042, 1279, 1533, 2080, 2407
DdeI	CTNAG	6 cut(s)	24, 512, 662, 1272, 2571, 2633
DpnI	GATC	8 cut(s)	59, 535, 807, 984, 1163, 1544, 2216, 2382
DpnII	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
EaeI	YGGCCR	5 cut(s)	1263, 1701, 2141, 2292, 2468
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Eco130I	CCWWGG	2 cut(s)	828, 2508
Eco24I	GRGCYC	2 cut(s)	134, 1000
Eco32I	GATATC	2 cut(s)	688, 2277
Eco47I	GGWCC	5 cut(s)	1601, 1763, 1801, 1892, 2710
Eco57I	CTGAAG	3 cut(s)	737, 873, 2660
Eco72I	CACGTG	1 cut(s)	2105
EcoNI	CCTNNNNNAGG	3 cut(s)	1218, 1587, 2195
EcoO109I	RGGNCCY	2 cut(s)	1906, 2710
EcoRII	CCWGG	3 cut(s)	573, 1404, 2516
EcoRV	GATATC	2 cut(s)	688, 2277
EcoT14I	CCWWGG	2 cut(s)	828, 2508
EcoT22I	ATGCAT	1 cut(s)	2649
EcoT38I	GRGCYC	2 cut(s)	134, 1000
ErhI	CCWWGG	2 cut(s)	828, 2508
FaqI	GGGAC	2 cut(s)	1565, 1582
FauI	CCCGC	4 cut(s)	54, 101, 602, 1088
FauNDI	CATATG	1 cut(s)	1117
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	5 cut(s)	101, 529, 784, 799, 2052
FriOI	GRGCYC	2 cut(s)	134, 1000
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	9 cut(s)	143, 197, 282, 440, 453, 710, 860, 1445, 2577
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	614
GsaI	CCCAGC	1 cut(s)	1563
GsuI	CTGGAG	4 cut(s)	105, 270, 596, 702
HapII	CCGG	7 cut(s)	35, 321, 480, 750, 1140, 1704, 2467
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	5 cut(s)	347, 1943, 2030, 2297, 2630
HinfI	GANTC	8 cut(s)	445, 539, 833, 1254, 1695, 1710, 1969, 2201
HpaII	CCGG	7 cut(s)	35, 321, 480, 750, 1140, 1704, 2467
HphI	GGTGA	7 cut(s)	82, 199, 817, 2012, 2525, 2665, 2699
Hpy188I	TCNGA	9 cut(s)	27, 105, 538, 717, 1334, 1633, 1918, 2281, 2334
Hpy99I	CGWCG	1 cut(s)	2451
HpyAV	CCTTC	8 cut(s)	486, 1155, 1786, 1874, 1919, 2045, 2552, 2684
HpyCH4III	ACNGT	5 cut(s)	170, 383, 757, 1351, 2411
HpyCH4IV	ACGT	3 cut(s)	1044, 1414, 2104
HpyF10VI	GCNNNNNNNGC	7 cut(s)	606, 1188, 1475, 2140, 2149, 2588, 2644
HpyF3I	CTNAG	6 cut(s)	24, 512, 662, 1272, 2571, 2633
HpySE526I	ACGT	3 cut(s)	1044, 1414, 2104
HspAI	GCGC	1 cut(s)	7
KroI	GCCGGC	1 cut(s)	2466
KroNI	GCCGGC	1 cut(s)	2468
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	5 cut(s)	4, 69, 137, 265, 1662
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	2 cut(s)	2030, 2656
MaeI	CTAG	9 cut(s)	143, 197, 282, 440, 453, 710, 860, 1445, 2577
MaeII	ACGT	3 cut(s)	1044, 1414, 2104
MaeIII	GTNAC	6 cut(s)	377, 1075, 1440, 1498, 1522, 2687
MalI	GATC	8 cut(s)	59, 535, 807, 984, 1163, 1544, 2216, 2382
MboI	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
MfeI	CAATTG	2 cut(s)	1929, 2454
MflI	RGATCY	2 cut(s)	533, 1542
MhlI	GDGCHC	3 cut(s)	134, 1000, 2110
MlsI	TGGCCA	3 cut(s)	1265, 2143, 2294
MluNI	TGGCCA	3 cut(s)	1265, 2143, 2294
MlyI	GAGTC	3 cut(s)	827, 1248, 1719
MmeI	TCCRAC	2 cut(s)	962, 1672
Mox20I	TGGCCA	3 cut(s)	1265, 2143, 2294
Mph1103I	ATGCAT	1 cut(s)	2649
MroNI	GCCGGC	1 cut(s)	2466
MroXI	GAANNNNTTC	2 cut(s)	725, 1754
MscI	TGGCCA	3 cut(s)	1265, 2143, 2294
MseI	TTAA	8 cut(s)	147, 359, 432, 503, 731, 974, 1938, 2595
MslI	CAYNNNNRTG	1 cut(s)	2552
Msp20I	TGGCCA	3 cut(s)	1265, 2143, 2294
MspA1I	CMGCKG	2 cut(s)	764, 779
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	7 cut(s)	35, 321, 480, 750, 1140, 1704, 2467
MspR9I	CCNGG	5 cut(s)	36, 575, 1141, 1406, 2518
MunI	CAATTG	2 cut(s)	1929, 2454
Mva1269I	GAATGC	1 cut(s)	1291
MvaI	CCWGG	3 cut(s)	575, 1406, 2518
MwoI	GCNNNNNNNGC	7 cut(s)	606, 1188, 1475, 2140, 2149, 2588, 2644
NaeI	GCCGGC	1 cut(s)	2468
NciI	CCSGG	2 cut(s)	36, 1141
NcoI	CCATGG	1 cut(s)	828
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
NgoMIV	GCCGGC	1 cut(s)	2466
NlaIV	GGNNCC	7 cut(s)	112, 133, 998, 1225, 2361, 2514, 2711
NmuCI	GTSAC	4 cut(s)	377, 1440, 1498, 2687
NsiI	ATGCAT	1 cut(s)	2649
NspI	RCATGY	3 cut(s)	727, 745, 2647
PagI	TCATGA	1 cut(s)	2127
PaqCI	CACCTGC	2 cut(s)	1469, 1670
PciI	ACATGT	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	892
PctI	GAATGC	1 cut(s)	1291
PdiI	GCCGGC	1 cut(s)	2468
PdmI	GAANNNNTTC	2 cut(s)	725, 1754
PfeI	GAWTC	5 cut(s)	445, 539, 1695, 1969, 2201
PflMI	CCANNNNNTGG	1 cut(s)	2706
PkrI	GCNGC	1 cut(s)	615
PleI	GAGTC	3 cut(s)	827, 1248, 1718
PmaCI	CACGTG	1 cut(s)	2105
PmlI	CACGTG	1 cut(s)	2105
PpsI	GAGTC	3 cut(s)	827, 1248, 1718
Ppu21I	YACGTR	1 cut(s)	2105
PpuMI	RGGWCCY	1 cut(s)	2710
PscI	ACATGT	1 cut(s)	723
PshAI	GACNNNNGTC	1 cut(s)	1599
Psp5II	RGGWCCY	1 cut(s)	2710
Psp6I	CCWGG	3 cut(s)	573, 1404, 2516
PspCI	CACGTG	1 cut(s)	2105
PspFI	CCCAGC	1 cut(s)	1559
PspGI	CCWGG	3 cut(s)	573, 1404, 2516
PspN4I	GGNNCC	7 cut(s)	112, 133, 998, 1225, 2361, 2514, 2711
PspOMI	GGGCCC	1 cut(s)	996
PspPPI	RGGWCCY	1 cut(s)	2710
PstI	CTGCAG	1 cut(s)	1681
PstNI	CAGNNNCTG	1 cut(s)	2706
PsuI	RGATCY	2 cut(s)	533, 1542
PvuII	CAGCTG	2 cut(s)	764, 779
RsaI	GTAC	6 cut(s)	555, 1043, 1280, 1534, 2081, 2408
RsaNI	GTAC	6 cut(s)	554, 1042, 1279, 1533, 2080, 2407
RseI	CAYNNNNRTG	1 cut(s)	2552
SalI	GTCGAC	1 cut(s)	640
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	8 cut(s)	147, 359, 432, 503, 731, 974, 1938, 2595
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	8 cut(s)	57, 533, 805, 982, 1161, 1542, 2214, 2380
ScaI	AGTACT	1 cut(s)	1534
SchI	GAGTC	3 cut(s)	827, 1248, 1719
ScrFI	CCNGG	5 cut(s)	36, 575, 1141, 1406, 2518
SduI	GDGCHC	3 cut(s)	134, 1000, 2110
SfaNI	GCATC	2 cut(s)	2030, 2656
SfcI	CTRYAG	2 cut(s)	1623, 1677
SinI	GGWCC	5 cut(s)	1601, 1763, 1801, 1892, 2710
SmiMI	CAYNNNNRTG	1 cut(s)	2552
SmlI	CTYRAG	4 cut(s)	431, 629, 835, 1825
SmoI	CTYRAG	4 cut(s)	431, 629, 835, 1825
SpeI	ACTAGT	3 cut(s)	142, 439, 1444
SsiI	CCGC	8 cut(s)	47, 94, 263, 592, 609, 923, 1081, 1110
SspI	AATATT	5 cut(s)	604, 652, 1377, 1465, 2664
SspMI	CTAG	9 cut(s)	143, 197, 282, 440, 453, 710, 860, 1445, 2577
StyD4I	CCNGG	5 cut(s)	34, 573, 1139, 1404, 2516
StyI	CCWWGG	2 cut(s)	828, 2508
TaaI	ACNGT	5 cut(s)	170, 383, 757, 1351, 2411
TaiI	ACGT	3 cut(s)	1047, 1417, 2107
TaqI	TCGA	6 cut(s)	216, 231, 308, 641, 1958, 2430
TatI	WGTACW	5 cut(s)	553, 1278, 1532, 2079, 2406
TfiI	GAWTC	5 cut(s)	445, 539, 1695, 1969, 2201
Tru1I	TTAA	8 cut(s)	147, 359, 432, 503, 731, 974, 1938, 2595
Tru9I	TTAA	8 cut(s)	147, 359, 432, 503, 731, 974, 1938, 2595
TscAI	CASTG	7 cut(s)	1192, 1519, 1672, 1692, 1930, 2478, 2625
TseFI	GTSAC	4 cut(s)	377, 1440, 1498, 2687
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	4 cut(s)	377, 1440, 1498, 2687
TspGWI	ACGGA	1 cut(s)	1535
TspRI	CASTG	7 cut(s)	1192, 1519, 1672, 1692, 1930, 2478, 2625
Van91I	CCANNNNNTGG	1 cut(s)	2706
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	5 cut(s)	1601, 1763, 1801, 1892, 2710
XagI	CCTNNNNNAGG	3 cut(s)	1218, 1587, 2195
XapI	RAATTY	7 cut(s)	28, 274, 365, 821, 959, 1507, 1976
XbaI	TCTAGA	1 cut(s)	2576
XceI	RCATGY	3 cut(s)	727, 745, 2647
XmiI	GTMKAC	1 cut(s)	641
XmnI	GAANNNNTTC	2 cut(s)	725, 1754
XspI	CTAG	9 cut(s)	143, 197, 282, 440, 453, 710, 860, 1445, 2577
ZrmI	AGTACT	1 cut(s)	1534
Zsp2I	ATGCAT	1 cut(s)	2649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.