Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004366

Physical Location & Seq

Genomic Coordinates Forward (+)

38999461 .. 39010456

Gene Structure 10996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGAACTCCAAAGAGGAAGAAGAAGCAGACCCCAGAGACCCAATTCCACTCTTCCCTCACTTTCTGCTCAAAGAACAAGGACTTAAATAGCGCAATCTCGCTGTATGAATCCGCTGTTTCGCAGAATACGCGGCTCAACCAGCACCATTTTAACACCCTACTCTACCTCTGCTCTAACTCTGTCACTGACCCGTCCCTGAAGCAATTGGCCTTGGAATATGGCTTCCGCGTGTTTGATCACATGTCGTCGATCGAAGTCCTCCCCAACGAGGCCACGATCACCGCTGTTGCTCGGCTCGCTGCGGCGAAAGGTGATGGTGATTATGCTTTTGAGCTGGTGAAGGGTATGGAGAAGTATAATGTATTGCCGAGGTTGCGCACTTGCGATCCGGCATTGTTTGGCTTTTGCGAGAAACTGGAGGCTGATAAGGCGTATGAGGTGGAAGAGTATATGAATAAGGTGGGAGTGAGTGTAGAAGAGCCTGAGATTGCAGCCTTATTAAAGGTGAGTGCAGAGACAGGAAGAGGGGAGAGGGTTTATGATTACTTGCACAAGTTGAGGAATGCTGTGAGGTGTGTTCATGAATCGACGGCCAAGATCATTGAGGATTGGTATCGTGATGGAAGGGCTAGTGAAGTGGGTGAGGTGAATTGGGACTCGGGTAGGGTCAAAGAGGCGGTTTTGAGGAATGGAGGAGGGTGGCATGGGCAGGGGTGGGTTGGGAAGGGGGATTGGTCTGTGCAGAGGGCCAATGTGGATTCTGACAGCAGGTGTTGCTCCTGTGGTGAGCATTTGGTTTGTGTTGACATTGACTGTGCAGAGACAGATAGGTTTGCGCAGTCTGTTGCTGCTTTGGCAATGGAAAGGGAGGTTAAGTTGAATTTCAGTGAGTTTCAGGATTGGCTGGACAAACATGCTGATTATGAAGCTATTGTGGATGGAGCTAATATTGGGCTCTACCAGCAGAATTTTGCAGAAGGTGGATTCAGTCTTCCTCAGCTTGATGCTGTTGTGAAAGAATTGTACAATAGAAGTGGAGAGAAATGGCCACTTGTTGTCTTGCATAATAGACGTTTTCGGTCACTTGTGGAAAACCCTTCCCACAGAAAAGTGGTTGAGGAGTGGATGGATAAAGGTATTCTTTATACCACACCAAGTGGCTCAAATGATGACTGGTATGAACTTGCATTTCTGTACCTTCTGAAACTTTATTACTTGTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

409

Amino Acids

46.38

Weight (kDa)

5.5

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	5 - 212	1.3e-83	Pentacotripeptide-repeat region of PRORP
PRORP	PF16953	254 - 396	1.7e-24	Protein-only RNase P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16650 AT2G16650 AT4G21900 AT5G60430 AT5G60430 AT5G60430 AT5G60430
fragaria_vesca	FvH4_3g24550 FvH4_3g24550 FvH4_3g24550
malus_domestica	MD03G1141100.v1.1 MD11G1171700.v1.1
prunus_persica	Prupe.6G126500_v2.0.a1
pyrus_communis	pycom03g09600
rosa_chinensis	RchiOBHm_Chr5g0043991
rosa_laevigata	RLG00000034233 RLG00000034235
rosa_multiflora	Rmu_sc0001157.1_g000006
rosa_roxburghii	Rroxscaffold_1G00037010
rosa_rugosa	Rorug05G0209600 Rorug05G0209700 Rorug05G0209700 Rorug05G0209800 Rorug05G0209900 Rorug05G0210000 Rorug05G0210100.1 Rorug05G0210200
rosa_samantha	Rh5AG294100 Rh5BG302500 Rh5CG329700 Rh5DG311300
rosa_wichuraiana	Rw5G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	762
Acc16I	TGCGCA	2 cut(s)	380, 840
Acc36I	ACCTGC	1 cut(s)	762
AccII	CGCG	2 cut(s)	133, 231
AciI	CCGC	6 cut(s)	114, 133, 229, 285, 305, 680
AclWI	GGATC	1 cut(s)	383
AcoI	YGGCCR	2 cut(s)	594, 1049
AcsI	RAATTY	2 cut(s)	883, 970
AcuI	CTGAAG	1 cut(s)	221
AdeI	CACNNNGTG	1 cut(s)	1160
AfaI	GTAC	2 cut(s)	1028, 1199
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	883
AluBI	AGCT	4 cut(s)	337, 932, 947, 1003
AluI	AGCT	4 cut(s)	337, 932, 947, 1003
Alw26I	GTCTC	3 cut(s)	32, 512, 818
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	5 cut(s)	210, 273, 594, 750, 1049
ApeKI	GCWGC	3 cut(s)	302, 494, 851
ApoI	RAATTY	2 cut(s)	883, 970
AspLEI	GCGC	3 cut(s)	95, 381, 841
AspS9I	GGNCC	1 cut(s)	750
AsuHPI	GGTGA	8 cut(s)	274, 326, 332, 352, 520, 656, 661, 800
AvaI	CYCGRG	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	1051
BanII	GRGCYC	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	986
BbvCI	CCTCAGC	1 cut(s)	999
BbvI	GCAGC	3 cut(s)	289, 506, 838
BccI	CCATC	4 cut(s)	311, 617, 935, 1123
BceAI	ACGGC	1 cut(s)	609
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	32, 512, 818
BfaI	CTAG	1 cut(s)	633
BfuAI	ACCTGC	1 cut(s)	762
BisI	GCNGC	5 cut(s)	134, 303, 306, 495, 852
BlsI	GCNGC	5 cut(s)	135, 304, 307, 496, 853
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	750
BmsI	GCATC	1 cut(s)	997
BpiI	GAAGAC	1 cut(s)	986
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	999
BsaBI	GATNNNNATC	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	213, 371
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 863, 893
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	423, 1181
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	213, 371
BseGI	GGATG	2 cut(s)	946, 1134
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	2 cut(s)	477, 1013
BseNI	ACTGG	2 cut(s)	423, 1181
BseRI	GAGGAG	2 cut(s)	711, 1136
BseXI	GCAGC	3 cut(s)	289, 506, 838
BsgI	GTGCAG	3 cut(s)	534, 764, 840
Bsh1236I	CGCG	2 cut(s)	133, 231
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	5 cut(s)	212, 275, 596, 752, 1051
BsiEI	CGRYCG	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	181, 671
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	3 cut(s)	32, 512, 818
BsmFI	GGGAC	2 cut(s)	181, 671
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	5 cut(s)	212, 275, 596, 752, 1051
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	661
Bsp1286I	GDGCHC	1 cut(s)	960
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	5 cut(s)	238, 252, 279, 388, 600
BspACI	CCGC	6 cut(s)	114, 133, 229, 285, 305, 680
BspANI	GGCC	5 cut(s)	212, 275, 596, 752, 1051
BspCNI	CTCAG	2 cut(s)	478, 1012
BspFNI	CGCG	2 cut(s)	133, 231
BspHI	TCATGA	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	762
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	867
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	2 cut(s)	423, 1181
BssECI	CCNNGG	2 cut(s)	213, 371
BssMI	GATC	5 cut(s)	238, 252, 279, 388, 600
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	4 cut(s)	58, 441, 474, 520
BstAPI	GCANNNNNTGC	1 cut(s)	777
BstAUI	TGTACA	1 cut(s)	1026
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	486, 999
BstF5I	GGATG	2 cut(s)	946, 1134
BstFNI	CGCG	2 cut(s)	133, 231
BstHHI	GCGC	3 cut(s)	95, 381, 841
BstKTI	GATC	5 cut(s)	241, 255, 282, 391, 603
BstMAI	GTCTC	3 cut(s)	32, 512, 818
BstMBI	GATC	5 cut(s)	238, 252, 279, 388, 600
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	8 cut(s)	130, 142, 299, 376, 431, 777, 857, 964
BstNSI	RCATGY	2 cut(s)	247, 920
BstUI	CGCG	2 cut(s)	133, 231
BstV1I	GCAGC	3 cut(s)	289, 506, 838
BstV2I	GAAGAC	1 cut(s)	986
BsuRI	GGCC	5 cut(s)	212, 275, 596, 752, 1051
BtsCI	GGATG	2 cut(s)	946, 1134
BtsIMutI	CAGTG	2 cut(s)	186, 895
BveI	ACCTGC	1 cut(s)	762
Cac8I	GCNNGC	1 cut(s)	300
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	3 cut(s)	95, 381, 841
Cfr13I	GGNCC	1 cut(s)	750
Csp6I	GTAC	2 cut(s)	1027, 1198
CspCI	CAANNNNNGTGG	2 cut(s)	1018, 1053
CviAII	CATG	4 cut(s)	244, 584, 707, 917
CviQI	GTAC	2 cut(s)	1027, 1198
DdeI	CTNAG	2 cut(s)	486, 999
DpnI	GATC	5 cut(s)	240, 254, 281, 390, 602
DpnII	GATC	5 cut(s)	238, 252, 279, 388, 600
DraIII	CACNNNGTG	1 cut(s)	1160
EaeI	YGGCCR	2 cut(s)	594, 1049
Eam1104I	CTCTTC	4 cut(s)	58, 441, 474, 520
EarI	CTCTTC	4 cut(s)	58, 441, 474, 520
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	247, 587, 710, 920
FalI	AAGNNNNNCTT	2 cut(s)	1128, 1160
FaqI	GGGAC	2 cut(s)	181, 671
FatI	CATG	4 cut(s)	243, 583, 706, 916
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	5 cut(s)	134, 303, 306, 495, 852
FokI	GGATG	2 cut(s)	953, 1141
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	5 cut(s)	134, 303, 306, 495, 852
FspBI	CTAG	1 cut(s)	633
FspI	TGCGCA	2 cut(s)	380, 840
GlaI	GCGC	3 cut(s)	94, 380, 840
GluI	GCNGC	5 cut(s)	134, 303, 306, 495, 852
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	5 cut(s)	212, 275, 596, 752, 1051
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	3 cut(s)	95, 381, 841
Hin1II	CATG	4 cut(s)	247, 587, 710, 920
Hin6I	GCGC	3 cut(s)	93, 379, 839
HinP1I	GCGC	3 cut(s)	93, 379, 839
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	5 cut(s)	110, 587, 659, 761, 987
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	8 cut(s)	274, 326, 332, 352, 520, 656, 661, 800
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	2 cut(s)	766, 1206
Hpy188III	TCNNGA	3 cut(s)	584, 620, 899
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	2 cut(s)	253, 595
HpyAV	CCTTC	6 cut(s)	337, 621, 721, 974, 1110, 1211
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4IV	ACGT	1 cut(s)	1075
HpyCH4V	TGCA	8 cut(s)	494, 515, 553, 745, 821, 977, 1066, 1190
HpyF10VI	GCNNNNNNNGC	8 cut(s)	130, 142, 299, 376, 431, 777, 857, 964
HpyF3I	CTNAG	2 cut(s)	486, 999
HpySE526I	ACGT	1 cut(s)	1075
Hsp92II	CATG	4 cut(s)	247, 587, 710, 920
HspAI	GCGC	3 cut(s)	93, 379, 839
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	238, 252, 279, 388, 600
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	785, 944
Lsp1109I	GCAGC	3 cut(s)	289, 506, 838
LweI	GCATC	1 cut(s)	997
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	2 cut(s)	184, 1083
MalI	GATC	5 cut(s)	240, 254, 281, 390, 602
MboI	GATC	5 cut(s)	238, 252, 279, 388, 600
MboII	GAAGA	7 cut(s)	31, 34, 45, 458, 491, 537, 986
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	960
MlsI	TGGCCA	1 cut(s)	1051
MluCI	AATT	6 cut(s)	44, 206, 652, 883, 970, 1022
MluNI	TGGCCA	1 cut(s)	1051
MlyI	GAGTC	1 cut(s)	653
Mox20I	TGGCCA	1 cut(s)	1051
MscI	TGGCCA	1 cut(s)	1051
MseI	TTAA	5 cut(s)	86, 153, 503, 876, 1228
Msp20I	TGGCCA	1 cut(s)	1051
MspA1I	CMGCKG	2 cut(s)	116, 287
MspI	CCGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	571
MvnI	CGCG	2 cut(s)	133, 231
MwoI	GCNNNNNNNGC	8 cut(s)	130, 142, 299, 376, 431, 777, 857, 964
NdeII	GATC	5 cut(s)	238, 252, 279, 388, 600
NlaIII	CATG	4 cut(s)	247, 587, 710, 920
NmeAIII	GCCGAG	2 cut(s)	274, 396
NmuCI	GTSAC	2 cut(s)	184, 1083
NsbI	TGCGCA	2 cut(s)	380, 840
NspI	RCATGY	2 cut(s)	247, 920
PagI	TCATGA	1 cut(s)	583
PaqCI	CACCTGC	1 cut(s)	762
PciI	ACATGT	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	110, 587, 761, 987
PkrI	GCNGC	5 cut(s)	135, 304, 307, 496, 853
Ple19I	CGATCG	1 cut(s)	255
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PscI	ACATGT	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	750
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	2 cut(s)	1028, 1199
RsaNI	GTAC	2 cut(s)	1027, 1198
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	5 cut(s)	86, 153, 503, 876, 1228
SatI	GCNGC	5 cut(s)	134, 303, 306, 495, 852
Sau3AI	GATC	5 cut(s)	238, 252, 279, 388, 600
Sau96I	GGNCC	1 cut(s)	750
SchI	GAGTC	1 cut(s)	653
SduI	GDGCHC	1 cut(s)	960
SfaNI	GCATC	1 cut(s)	997
Sse9I	AATT	6 cut(s)	44, 206, 652, 883, 970, 1022
SsiI	CCGC	6 cut(s)	114, 133, 229, 285, 305, 680
SspI	AATATT	1 cut(s)	952
SspMI	CTAG	1 cut(s)	633
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	818
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	3 cut(s)	251, 255, 590
TaqII	GACCGA	1 cut(s)	1071
TasI	AATT	6 cut(s)	44, 206, 652, 883, 970, 1022
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	2 cut(s)	136, 308
TfiI	GAWTC	4 cut(s)	110, 587, 761, 987
Tru1I	TTAA	5 cut(s)	86, 153, 503, 876, 1228
Tru9I	TTAA	5 cut(s)	86, 153, 503, 876, 1228
TscAI	CASTG	2 cut(s)	193, 895
TseFI	GTSAC	2 cut(s)	184, 1083
TseI	GCWGC	3 cut(s)	302, 494, 851
Tsp45I	GTSAC	2 cut(s)	184, 1083
TspDTI	ATGAA	6 cut(s)	123, 470, 572, 600, 942, 1197
TspRI	CASTG	2 cut(s)	193, 895
XapI	RAATTY	2 cut(s)	883, 970
XceI	RCATGY	2 cut(s)	247, 920
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.