Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004366

Physical Location & Seq

Genomic Coordinates Reverse (-)

20942984 .. 20947058

Gene Structure 4075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0209600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAGATGCAATGCGTGTTGGCGTGAACTGGAAGGCCGGGCCATCTCAACAACCTGTGGCCACCTTCTCTGCACAGAGGATGCTAACAAGATCCTTAGCAATGATGGAGCATGTCCCATTTGTGATCAAGTGCTCTCTAAGAGTCATATGAAAGTTGTGGATGTCAATCCAAATGATGAATGGATAAATATGGCCATGACTGGAGTGTCTCCAGATATATTAATGAAGAGTGCACATAGAAGTGTCATGTTCTATATTGGGCAAAAGGAATTGATAATGCAGCGCAAGTTGAGCATGGTAGCAGGTCAATACCGGCAGAAATGTGAAGCAATGCAAGAAAAGTTCATGGAGCAATTGCAAAAGATGCAGTCTCAGTGCCAGAAATATGCCAAGAAGTGCGAAATGTTGGAGCAAGAAAATGAGAGCTTGTCCAAGGATAAGCAGGAGCTCCAGGAAAAATATTCAGAGAAATCCAGACAGAAGAGAAAGTTGGATGAAATGTATGATCAATTGAGGAGTGAGTACGAATCAGTTAAACGAAATGCCATCCAACCTGCAACAAATTTCTATTCCAGAAATGAACCTGATCTTTTCTCAAACCAGGCTAACATTATGGATCGCAGAGAGGCTGTTAGAAAAGGGCCAAAAGAGGATATATGGCCAGCAAGACAGAATAGTTCAAACTCGGGTGGTCCTTTTGATGTCTCTATCTCACCGGCAAAACAAGCTGCCATGCCAGTCGATGCTGTGAACAGAAGGCCTGGTGCTAACCCAATGTTTGGATCTGGAGCTAGCAACCCCTCAACGACTTTAAGGAACATTTTATTCTCCCCAATAAAGAGGCCTCAGCTCTCCCGTCGTCCTCAGATGTTCACGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

293

Amino Acids

33.55

Weight (kDa)

9.07

Isoelectric Point (pI)

67.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	2 - 43	8.8e-07	zinc-RING finger domain
zf-C3HC4_3	PF13920	2 - 46	8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16650 AT2G16650 AT4G21900 AT5G60430 AT5G60430 AT5G60430 AT5G60430
fragaria_vesca	FvH4_3g24550 FvH4_3g24550 FvH4_3g24550
malus_domestica	MD03G1141100.v1.1 MD11G1171700.v1.1
prunus_persica	Prupe.6G126500_v2.0.a1
pyrus_communis	pycom03g09600
rosa_chinensis	RchiOBHm_Chr5g0043991
rosa_laevigata	RLG00000034233 RLG00000034235
rosa_multiflora	Rmu_sc0001157.1_g000006
rosa_roxburghii	Rroxscaffold_1G00037010
rosa_rugosa	Rorug05G0209600 Rorug05G0209700 Rorug05G0209700 Rorug05G0209800 Rorug05G0209900 Rorug05G0210000 Rorug05G0210100.1 Rorug05G0210200
rosa_samantha	Rh5AG294100 Rh5BG302500 Rh5CG329700 Rh5DG311300
rosa_wichuraiana	Rw5G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	205
Acc36I	ACCTGC	2 cut(s)	293, 562
AccB7I	CCANNNNNTGG	1 cut(s)	779
AclWI	GGATC	3 cut(s)	85, 624, 790
AcoI	YGGCCR	3 cut(s)	58, 192, 659
AcsI	RAATTY	1 cut(s)	562
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	779
AgsI	TTSAA	1 cut(s)	681
AjnI	CCWGG	3 cut(s)	450, 600, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	5 cut(s)	426, 448, 728, 791, 850
AluI	AGCT	5 cut(s)	426, 448, 728, 791, 850
Alw21I	GWGCWC	3 cut(s)	135, 235, 450
Alw26I	GTCTC	3 cut(s)	213, 375, 709
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	85, 624, 790
Ama87I	CYCGRG	1 cut(s)	685
AoxI	GGCC	8 cut(s)	34, 39, 58, 192, 641, 659, 758, 842
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	280, 728
ApoI	RAATTY	1 cut(s)	562
AseI	ATTAAT	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	39, 641, 692
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	705
AsuNHI	GCTAGC	1 cut(s)	791
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	235
BalI	TGGCCA	3 cut(s)	60, 194, 661
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	3 cut(s)	135, 235, 450
BbvCI	CCTCAGC	1 cut(s)	846
BbvI	GCAGC	2 cut(s)	292, 715
BccI	CCATC	3 cut(s)	50, 98, 554
BciT130I	CCWGG	3 cut(s)	452, 602, 762
BclI	TGATCA	2 cut(s)	124, 505
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	3 cut(s)	213, 375, 709
BfaI	CTAG	2 cut(s)	792, 880
BfuAI	ACCTGC	2 cut(s)	293, 562
BisI	GCNGC	2 cut(s)	281, 729
BlsI	GCNGC	2 cut(s)	282, 730
Bme1390I	CCNGG	4 cut(s)	38, 452, 602, 762
Bme18I	GGWCC	1 cut(s)	692
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	3 cut(s)	39, 641, 692
BmrFI	CCNGG	4 cut(s)	38, 452, 602, 762
BmsI	GCATC	3 cut(s)	70, 354, 733
BmtI	GCTAGC	1 cut(s)	795
BpmI	CTGGAG	4 cut(s)	195, 222, 434, 807
Bpu10I	CCTNAGC	2 cut(s)	95, 846
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse118I	RCCGGY	2 cut(s)	312, 715
Bse1I	ACTGG	3 cut(s)	33, 205, 737
Bse3DI	GCAATG	3 cut(s)	16, 106, 336
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	452, 602, 762
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	4 cut(s)	85, 166, 499, 546
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMI	GCAATG	3 cut(s)	16, 106, 336
BseMII	CTCAG	3 cut(s)	386, 860, 878
BseNI	ACTGG	3 cut(s)	33, 205, 737
BseRI	GAGGAG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	292, 715
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	8 cut(s)	36, 41, 60, 194, 643, 661, 760, 844
BsiHKAI	GWGCWC	3 cut(s)	135, 235, 450
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	3 cut(s)	37, 313, 716
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	779
BsmAI	GTCTC	3 cut(s)	213, 375, 709
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	8 cut(s)	36, 41, 60, 194, 643, 661, 760, 844
BsoBI	CYCGRG	1 cut(s)	685
Bsp1286I	GDGCHC	3 cut(s)	135, 235, 450
Bsp143I	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
BspANI	GGCC	8 cut(s)	36, 41, 60, 194, 643, 661, 760, 844
BspCNI	CTCAG	3 cut(s)	385, 859, 877
BspMI	ACCTGC	2 cut(s)	293, 562
BspOI	GCTAGC	1 cut(s)	795
BspPI	GGATC	3 cut(s)	85, 624, 790
BsrDI	GCAATG	3 cut(s)	16, 106, 336
BsrFI	RCCGGY	2 cut(s)	312, 715
BsrI	ACTGG	3 cut(s)	33, 205, 737
BssAI	RCCGGY	2 cut(s)	312, 715
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	452, 602, 762
Bst6I	CTCTTC	2 cut(s)	221, 476
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	663, 793
BstDEI	CTNAG	5 cut(s)	95, 138, 372, 846, 864
BstF5I	GGATG	4 cut(s)	85, 166, 499, 546
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	6 cut(s)	93, 127, 508, 589, 619, 785
BstMAI	GTCTC	3 cut(s)	213, 375, 709
BstMBI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 364, 725
BstNI	CCWGG	3 cut(s)	452, 602, 762
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	4 cut(s)	36, 450, 600, 760
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	292, 715
BstX2I	RGATCY	2 cut(s)	90, 782
BstYI	RGATCY	2 cut(s)	90, 782
BsuRI	GGCC	8 cut(s)	36, 41, 60, 194, 643, 661, 760, 844
BtsCI	GGATG	4 cut(s)	85, 166, 499, 546
BtsIMutI	CAGTG	1 cut(s)	380
BveI	ACCTGC	2 cut(s)	293, 562
Cac8I	GCNNGC	2 cut(s)	663, 793
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	2 cut(s)	312, 715
Cfr13I	GGNCC	3 cut(s)	39, 641, 692
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	6 cut(s)	111, 196, 247, 295, 346, 733
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	5 cut(s)	95, 138, 372, 846, 864
DpnI	GATC	6 cut(s)	92, 126, 507, 588, 618, 784
DpnII	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	3 cut(s)	58, 192, 659
Eam1104I	CTCTTC	2 cut(s)	221, 476
EarI	CTCTTC	2 cut(s)	221, 476
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	2 cut(s)	760, 844
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	685
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	450, 600, 760
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	6 cut(s)	114, 199, 250, 298, 349, 736
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	6 cut(s)	110, 195, 246, 294, 345, 732
FauNDI	CATATG	1 cut(s)	147
FbaI	TGATCA	2 cut(s)	124, 505
Fnu4HI	GCNGC	2 cut(s)	281, 729
FokI	GGATG	4 cut(s)	92, 173, 506, 533
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	2 cut(s)	281, 729
FspBI	CTAG	2 cut(s)	792, 880
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	281, 729
GsuI	CTGGAG	4 cut(s)	195, 222, 434, 807
HaeIII	GGCC	8 cut(s)	36, 41, 60, 194, 643, 661, 760, 844
HapII	CCGG	3 cut(s)	37, 313, 716
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	6 cut(s)	114, 199, 250, 298, 349, 736
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	142, 527
HpaII	CCGG	3 cut(s)	37, 313, 716
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	4 cut(s)	26, 233, 751, 873
Hpy188I	TCNGA	2 cut(s)	466, 867
Hpy188III	TCNNGA	4 cut(s)	212, 474, 573, 786
Hpy8I	GTNNAC	4 cut(s)	26, 233, 751, 873
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	3 cut(s)	26, 74, 750
HpyCH4IV	ACGT	1 cut(s)	875
HpyCH4V	TGCA	8 cut(s)	9, 72, 233, 280, 334, 358, 367, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 364, 725
HpyF3I	CTNAG	5 cut(s)	95, 138, 372, 846, 864
HpySE526I	ACGT	1 cut(s)	875
Hsp92II	CATG	6 cut(s)	114, 199, 250, 298, 349, 736
HspAI	GCGC	1 cut(s)	283
Ksp22I	TGATCA	2 cut(s)	124, 505
Kzo9I	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
LmnI	GCTCC	6 cut(s)	107, 349, 409, 445, 453, 788
Lsp1109I	GCAGC	2 cut(s)	292, 715
LweI	GCATC	3 cut(s)	70, 354, 733
MaeI	CTAG	2 cut(s)	792, 880
MaeII	ACGT	1 cut(s)	875
MalI	GATC	6 cut(s)	92, 126, 507, 588, 618, 784
MboI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
MboII	GAAGA	2 cut(s)	238, 493
MfeI	CAATTG	2 cut(s)	353, 509
MflI	RGATCY	2 cut(s)	90, 782
MhlI	GDGCHC	3 cut(s)	135, 235, 450
MlsI	TGGCCA	3 cut(s)	60, 194, 661
MluCI	AATT	4 cut(s)	269, 353, 509, 562
MluNI	TGGCCA	3 cut(s)	60, 194, 661
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	3 cut(s)	387, 471, 574
MnlI	CCTC	8 cut(s)	70, 507, 619, 643, 811, 834, 855, 873
Mox20I	TGGCCA	3 cut(s)	60, 194, 661
MscI	TGGCCA	3 cut(s)	60, 194, 661
MseI	TTAA	3 cut(s)	221, 534, 812
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	3 cut(s)	60, 194, 661
MspI	CCGG	3 cut(s)	37, 313, 716
MspR9I	CCNGG	4 cut(s)	38, 452, 602, 762
MunI	CAATTG	2 cut(s)	353, 509
MvaI	CCWGG	3 cut(s)	452, 602, 762
MwoI	GCNNNNNNNGC	3 cut(s)	291, 364, 725
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
NheI	GCTAGC	1 cut(s)	791
NlaIII	CATG	6 cut(s)	114, 199, 250, 298, 349, 736
NspI	RCATGY	1 cut(s)	114
PceI	AGGCCT	2 cut(s)	760, 844
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	779
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	282, 730
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PshBI	ATTAAT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	450, 600, 760
PspGI	CCWGG	3 cut(s)	450, 600, 760
PspPI	GGNCC	3 cut(s)	39, 641, 692
PsuI	RGATCY	2 cut(s)	90, 782
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	221, 534, 812
SatI	GCNGC	2 cut(s)	281, 729
Sau3AI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
Sau96I	GGNCC	3 cut(s)	39, 641, 692
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	4 cut(s)	38, 452, 602, 762
SduI	GDGCHC	3 cut(s)	135, 235, 450
SfaNI	GCATC	3 cut(s)	70, 354, 733
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	4 cut(s)	269, 353, 509, 562
SseBI	AGGCCT	2 cut(s)	760, 844
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	2 cut(s)	792, 880
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	2 cut(s)	760, 844
StyD4I	CCNGG	4 cut(s)	36, 450, 600, 760
StyI	CCWWGG	1 cut(s)	432
TaiI	ACGT	1 cut(s)	878
TaqI	TCGA	1 cut(s)	741
TasI	AATT	4 cut(s)	269, 353, 509, 562
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	221, 534, 812
Tru9I	TTAA	3 cut(s)	221, 534, 812
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	2 cut(s)	280, 728
TspDTI	ATGAA	6 cut(s)	164, 192, 239, 334, 510, 594
TspRI	CASTG	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	779
VneI	GTGCAC	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	692
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XspI	CTAG	2 cut(s)	792, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.