AT4G21900
NAC Family

Proteinaceous RNase P

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
11616338 .. 11619421
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21900.1

Sequence Viewer

Length: 1731 bp
ATGAAATTGAAAAAACCTTCATTGCCTTCTTCATTGCTCTGCGCCGTCCCGCCTTGTCTCTCTCAAATTCGCTTACTCATCCCTCGCAGGGTAAGGGTTTCATCATCAACTTTCGCCAATGCAAAGCTTGTAACTTTGAGAAACCACACTGTTAATTTGCACATATATTACTGTTCCATGGCTGGTACTGATAACCGCCGCTCTCGCCACGACGACGAAAGCCCTAAAAATCCCAACAAGAAGAAGAAAGGAAACCGTAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCATGTTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATCACTTCCAGTGACATTCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTACCTCTGCTCCGCGTTCATTAGTGACCCATCTCTTCAAACCGTTGCCATTGACCGTGGCTTTCAAATTTTTGACCGTATGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTGCACGACTAGCTGCTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTTGTTGCTGTTGGTGGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGATACTTTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTCAGGTATTGTGTTGGAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGGCCGAGAAAACAAGGTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCAAAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAATGGGATTGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGGGGTGGGTGGCATGGTCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCTCAGCCGGGAAATGTTTGAGCTGTGATGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGAAGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAGGCAAAGATGAATTCATGCGAGCCTATGGCGGATTTCAGTGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGATTACGAAGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCAGATGGTGGTTTCAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAGCAAAAAACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCGCTTTTAGAAAACCCGAATCACCGGAATCTTGTGGAAGAATGGATTAATAACAATGTCCTGTATGCGACTCCACCAGGTTCCAATGATGATTGGTATTGGCTCTACGCTGCTGCTAAACTCAAGTGTTTACTTGTGACTAATGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAACAGTTTCTTCCAAAAATGGAAAGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACCTCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAAGGATCATGGCACGTTCCAATCACGAGTCAAGACAAGGAGGAATCTTTAAGAAGTTGGATGTGCATTACAAGGCAGAGTTCATAG

Protein Analysis

576

Amino Acids

64.39

Weight (kDa)

7.18

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 79 - 292 1.1e-81 Pentacotripeptide-repeat region of PRORP
PRORP PF16953 335 - 570 5.8e-61 Protein-only RNase P
RNase_Zc3h12a PF11977 399 - 532 4.7e-06 Zc3h12a-like Ribonuclease NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 1258
AccII CGCG 1 cut(s) 410
AciI CCGC 6 cut(s) 50, 196, 199, 408, 1145, 1319
AclWI GGATC 3 cut(s) 318, 1624, 1657
AcsI RAATTY 5 cut(s) 66, 462, 1084, 1126, 1234
AcuI CTGAAG 2 cut(s) 684, 1092
AfaI GTAC 1 cut(s) 187
AfeI AGCGCT 1 cut(s) 751
AfiI CCNNNNNNNGG 2 cut(s) 88, 1639
AjnI CCWGG 2 cut(s) 1426, 1632
AloI GAACNNNNNNTCC 2 cut(s) 610, 642
Alw26I GTCTC 5 cut(s) 62, 278, 546, 1061, 1598
AlwI GGATC 3 cut(s) 318, 1624, 1657
Aor51HI AGCGCT 1 cut(s) 751
AoxI GGCC 1 cut(s) 760
ApoI RAATTY 5 cut(s) 66, 462, 1084, 1126, 1234
ArsI GACNNNNNNTTYG 2 cut(s) 1551, 1583
AseI ATTAAT 1 cut(s) 1398
AspLEI GCGC 3 cut(s) 44, 752, 1354
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 1012
AsuHPI GGTGA 3 cut(s) 557, 1105, 1364
AsuNHI GCTAGC 1 cut(s) 869
AvaII GGWCC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 1224
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BauI CACGAG 1 cut(s) 1669
BccI CCATC 4 cut(s) 433, 542, 1199, 1238
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 711, 745
BciT130I CCWGG 2 cut(s) 1428, 1634
BcnI CCSGG 1 cut(s) 1012
BcoDI GTCTC 5 cut(s) 62, 278, 546, 1061, 1598
BfaI CTAG 3 cut(s) 530, 870, 1202
BfmI CTRYAG 3 cut(s) 516, 788, 1275
BfoI RGCGCY 1 cut(s) 753
BglII AGATCT 1 cut(s) 726
BlpI GCTNAGC 1 cut(s) 1006
Bme1390I CCNGG 3 cut(s) 1012, 1428, 1634
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 2 cut(s) 606, 1432
BmrFI CCNGG 3 cut(s) 1012, 1428, 1634
BmsI GCATC 2 cut(s) 328, 685
BmtI GCTAGC 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 1006
BpuEI CTTGAG 2 cut(s) 1457, 1580
BpuMI CCSGG 1 cut(s) 1012
BsaJI CCNNGG 3 cut(s) 177, 451, 540
BsaWI WCCGGW 1 cut(s) 1374
BsaXI ACNNNNNCTCC 4 cut(s) 389, 419, 610, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 1639
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 2 cut(s) 20, 32
BseBI CCWGG 2 cut(s) 1428, 1634
BseDI CCNNGG 3 cut(s) 177, 451, 540
BseGI GGATG 3 cut(s) 78, 700, 1710
BseLI CCNNNNNNNGG 2 cut(s) 88, 1639
BseMI GCAATG 2 cut(s) 20, 32
BseMII CTCAG 3 cut(s) 330, 605, 1020
BseNI ACTGG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 731
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 762
BsiSI CCGG 3 cut(s) 629, 1011, 1375
BslFI GGGAC 2 cut(s) 32, 590
BslI CCNNNNNNNGG 2 cut(s) 88, 1639
BsmAI GTCTC 5 cut(s) 62, 278, 546, 1061, 1598
BsmFI GGGAC 2 cut(s) 32, 590
BsnI GGCC 1 cut(s) 762
Bsp1286I GDGCHC 1 cut(s) 1224
Bsp143I GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
Bsp1720I GCTNAGC 1 cut(s) 1006
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 6 cut(s) 50, 196, 199, 408, 1145, 1319
BspANI GGCC 1 cut(s) 762
BspCNI CTCAG 3 cut(s) 329, 606, 1019
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 606, 1432
BspMAI CTGCAG 2 cut(s) 520, 792
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 3 cut(s) 318, 1624, 1657
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 2 cut(s) 20, 32
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 3 cut(s) 177, 451, 540
BssMI GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
BssSI CACGAG 1 cut(s) 1669
BssT1I CCWWGG 2 cut(s) 177, 540
Bst2BI CACGAG 1 cut(s) 1669
Bst2UI CCWGG 2 cut(s) 1428, 1634
Bst4CI ACNGT 7 cut(s) 151, 173, 257, 439, 452, 473, 1535
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 871, 1136
BstDEI CTNAG 4 cut(s) 316, 614, 914, 1006
BstDSI CCRYGG 2 cut(s) 177, 451
BstF5I GGATG 3 cut(s) 78, 700, 1710
BstFNI CGCG 1 cut(s) 410
BstH2I RGCGCY 1 cut(s) 753
BstHHI GCGC 3 cut(s) 44, 752, 1354
BstKTI GATC 6 cut(s) 313, 688, 729, 1510, 1632, 1652
BstMAI GTCTC 5 cut(s) 62, 278, 546, 1061, 1598
BstMBI GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
BstMWI GCNNNNNNNGC 5 cut(s) 204, 326, 530, 1177, 1606
BstNI CCWGG 2 cut(s) 1428, 1634
BstSCI CCNGG 3 cut(s) 1010, 1426, 1632
BstSFI CTRYAG 3 cut(s) 516, 788, 1275
BstUI CGCG 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 310, 726
BstYI RGATCY 2 cut(s) 310, 726
BsuRI GGCC 1 cut(s) 762
BtgI CCRYGG 2 cut(s) 177, 451
BtsCI GGATG 3 cut(s) 78, 700, 1710
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 4 cut(s) 147, 361, 513, 1159
Cac8I GCNNGC 2 cut(s) 871, 1136
CfoI GCGC 3 cut(s) 44, 752, 1354
Cfr13I GGNCC 1 cut(s) 604
CsiI ACCWGGT 1 cut(s) 1426
Csp6I GTAC 1 cut(s) 186
CspCI CAANNNNNGTGG 2 cut(s) 1282, 1317
CviAII CATG 7 cut(s) 178, 294, 691, 950, 1131, 1181, 1653
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 4 cut(s) 316, 614, 914, 1006
DpnI GATC 6 cut(s) 312, 687, 728, 1509, 1631, 1651
DpnII GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 1160
Eco130I CCWWGG 2 cut(s) 177, 540
Eco24I GRGCYC 1 cut(s) 1224
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 604
Eco47III AGCGCT 1 cut(s) 751
Eco57I CTGAAG 2 cut(s) 684, 1092
EcoRI GAATTC 2 cut(s) 1084, 1126
EcoRII CCWGG 2 cut(s) 1426, 1632
EcoRV GATATC 1 cut(s) 785
EcoT14I CCWWGG 2 cut(s) 177, 540
EcoT38I GRGCYC 1 cut(s) 1224
ErhI CCWWGG 2 cut(s) 177, 540
FaeI CATG 7 cut(s) 181, 297, 694, 953, 1134, 1184, 1656
FaqI GGGAC 2 cut(s) 32, 590
FatI CATG 7 cut(s) 177, 293, 690, 949, 1130, 1180, 1652
FauI CCCGC 1 cut(s) 57
FblI GTMKAC 1 cut(s) 1258
FokI GGATG 3 cut(s) 65, 707, 1717
FriOI GRGCYC 1 cut(s) 1224
FspBI CTAG 3 cut(s) 530, 870, 1202
GlaI GCGC 3 cut(s) 43, 751, 1353
HaeII RGCGCY 1 cut(s) 753
HaeIII GGCC 1 cut(s) 762
HapII CCGG 3 cut(s) 629, 1011, 1375
HhaI GCGC 3 cut(s) 44, 752, 1354
Hin1II CATG 7 cut(s) 181, 297, 694, 953, 1134, 1184, 1656
Hin6I GCGC 3 cut(s) 42, 750, 1352
HinP1I GCGC 3 cut(s) 42, 750, 1352
HindIII AAGCTT 3 cut(s) 125, 566, 1598
HinfI GANTC 8 cut(s) 271, 503, 1369, 1378, 1420, 1637, 1672, 1688
HpaII CCGG 3 cut(s) 629, 1011, 1375
HphI GGTGA 3 cut(s) 557, 1105, 1364
Hpy166II GTNNAC 3 cut(s) 1259, 1481, 1575
Hpy188I TCNGA 3 cut(s) 615, 901, 1642
Hpy188III TCNNGA 4 cut(s) 263, 1163, 1669, 1676
Hpy8I GTNNAC 3 cut(s) 1259, 1481, 1575
Hpy99I CGWCG 2 cut(s) 215, 218
HpyAV CCTTC 6 cut(s) 27, 36, 401, 965, 1108, 1276
HpyCH4III ACNGT 7 cut(s) 151, 173, 257, 439, 452, 473, 1535
HpyCH4IV ACGT 1 cut(s) 1659
HpyF10VI GCNNNNNNNGC 5 cut(s) 204, 326, 530, 1177, 1606
HpyF3I CTNAG 4 cut(s) 316, 614, 914, 1006
HpySE526I ACGT 1 cut(s) 1659
Hsp92II CATG 7 cut(s) 181, 297, 694, 953, 1134, 1184, 1656
HspAI GCGC 3 cut(s) 42, 750, 1352
Kzo9I GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
LmnI GCTCC 3 cut(s) 410, 631, 1208
LweI GCATC 2 cut(s) 328, 685
MabI ACCWGGT 1 cut(s) 1426
MaeI CTAG 3 cut(s) 530, 870, 1202
MaeII ACGT 1 cut(s) 1659
MaeIII GTNAC 7 cut(s) 130, 356, 419, 511, 1093, 1486, 1529
MalI GATC 6 cut(s) 312, 687, 728, 1509, 1631, 1651
MbiI CCGCTC 1 cut(s) 201
MboI GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
MflI RGATCY 2 cut(s) 310, 726
MhlI GDGCHC 1 cut(s) 1224
MluCI AATT 8 cut(s) 5, 66, 154, 462, 1084, 1126, 1234, 1323
MlyI GAGTC 3 cut(s) 280, 1414, 1681
MmeI TCCRAC 3 cut(s) 693, 946, 1682
MseI TTAA 6 cut(s) 153, 573, 797, 1398, 1526, 1694
MslI CAYNNNNRTG 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 320, 923
MspI CCGG 3 cut(s) 629, 1011, 1375
MspR9I CCNGG 3 cut(s) 1012, 1428, 1634
MvaI CCWGG 2 cut(s) 1428, 1634
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 5 cut(s) 204, 326, 530, 1177, 1606
NciI CCSGG 1 cut(s) 1012
NcoI CCATGG 1 cut(s) 177
NdeII GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 7 cut(s) 181, 297, 694, 953, 1134, 1184, 1656
NlaIV GGNNCC 2 cut(s) 606, 1432
NmeAIII GCCGAG 2 cut(s) 710, 788
NmuCI GTSAC 5 cut(s) 356, 419, 511, 1093, 1486
PfeI GAWTC 5 cut(s) 503, 1369, 1378, 1637, 1688
PfoI TCCNGGA 1 cut(s) 1632
PleI GAGTC 3 cut(s) 279, 1414, 1680
PpsI GAGTC 3 cut(s) 279, 1414, 1680
PshBI ATTAAT 1 cut(s) 1398
Psp6I CCWGG 2 cut(s) 1426, 1632
PspGI CCWGG 2 cut(s) 1426, 1632
PspN4I GGNNCC 2 cut(s) 606, 1432
PspPI GGNCC 1 cut(s) 604
PsrI GAACNNNNNNTAC 2 cut(s) 466, 498
PstI CTGCAG 2 cut(s) 520, 792
PsuI RGATCY 2 cut(s) 310, 726
PvuII CAGCTG 2 cut(s) 320, 923
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 6 cut(s) 153, 573, 797, 1398, 1526, 1694
Sau3AI GATC 6 cut(s) 310, 685, 726, 1507, 1629, 1649
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 3 cut(s) 280, 1414, 1681
ScrFI CCNGG 3 cut(s) 1012, 1428, 1634
SduI GDGCHC 1 cut(s) 1224
SexAI ACCWGGT 1 cut(s) 1426
SfaNI GCATC 2 cut(s) 328, 685
SfcI CTRYAG 3 cut(s) 516, 788, 1275
SinI GGWCC 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 2 cut(s) 1472, 1595
SmoI CTYRAG 2 cut(s) 1472, 1595
Sse9I AATT 8 cut(s) 5, 66, 154, 462, 1084, 1126, 1234, 1323
SsiI CCGC 6 cut(s) 50, 196, 199, 408, 1145, 1319
SspI AATATT 1 cut(s) 1216
SspMI CTAG 3 cut(s) 530, 870, 1202
StyD4I CCNGG 3 cut(s) 1010, 1426, 1632
StyI CCWWGG 2 cut(s) 177, 540
TaaI ACNGT 7 cut(s) 151, 173, 257, 439, 452, 473, 1535
TaiI ACGT 1 cut(s) 1662
TaqI TCGA 1 cut(s) 843
TaqII GACCGA 1 cut(s) 592
TasI AATT 8 cut(s) 5, 66, 154, 462, 1084, 1126, 1234, 1323
TauI GCSGC 2 cut(s) 201, 1321
TfiI GAWTC 5 cut(s) 503, 1369, 1378, 1637, 1688
Tru1I TTAA 6 cut(s) 153, 573, 797, 1398, 1526, 1694
Tru9I TTAA 6 cut(s) 153, 573, 797, 1398, 1526, 1694
TscAI CASTG 4 cut(s) 154, 361, 520, 1159
TseFI GTSAC 5 cut(s) 356, 419, 511, 1093, 1486
Tsp45I GTSAC 5 cut(s) 356, 419, 511, 1093, 1486
TspRI CASTG 4 cut(s) 154, 361, 520, 1159
VpaK11BI GGWCC 1 cut(s) 604
VspI ATTAAT 1 cut(s) 1398
XapI RAATTY 5 cut(s) 66, 462, 1084, 1126, 1234
XmiI GTMKAC 1 cut(s) 1258
XspI CTAG 3 cut(s) 530, 870, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.