Proteinaceous RNase P
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G16650 AT2G16650 AT4G21900 AT5G60430 AT5G60430 AT5G60430 AT5G60430 |
| fragaria_vesca | FvH4_3g24550 FvH4_3g24550 FvH4_3g24550 |
| malus_domestica | MD03G1141100.v1.1 MD11G1171700.v1.1 |
| prunus_persica | Prupe.6G126500_v2.0.a1 |
| pyrus_communis | pycom03g09600 |
| rosa_chinensis | RchiOBHm_Chr5g0043991 |
| rosa_laevigata | RLG00000034233 RLG00000034235 |
| rosa_multiflora | Rmu_sc0001157.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00037010 |
| rosa_rugosa | Rorug05G0209600 Rorug05G0209700 Rorug05G0209700 Rorug05G0209800 Rorug05G0209900 Rorug05G0210000 Rorug05G0210100.1 Rorug05G0210200 |
| rosa_samantha | Rh5AG294100 Rh5BG302500 Rh5CG329700 Rh5DG311300 |
| rosa_wichuraiana | Rw5G027270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 201 |
| AccI | GTMKAC | 1 cut(s) | 1258 |
| AccII | CGCG | 1 cut(s) | 410 |
| AciI | CCGC | 6 cut(s) | 50, 196, 199, 408, 1145, 1319 |
| AclWI | GGATC | 3 cut(s) | 318, 1624, 1657 |
| AcsI | RAATTY | 5 cut(s) | 66, 462, 1084, 1126, 1234 |
| AcuI | CTGAAG | 2 cut(s) | 684, 1092 |
| AfaI | GTAC | 1 cut(s) | 187 |
| AfeI | AGCGCT | 1 cut(s) | 751 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 88, 1639 |
| AjnI | CCWGG | 2 cut(s) | 1426, 1632 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 610, 642 |
| Alw26I | GTCTC | 5 cut(s) | 62, 278, 546, 1061, 1598 |
| AlwI | GGATC | 3 cut(s) | 318, 1624, 1657 |
| Aor51HI | AGCGCT | 1 cut(s) | 751 |
| AoxI | GGCC | 1 cut(s) | 760 |
| ApoI | RAATTY | 5 cut(s) | 66, 462, 1084, 1126, 1234 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1551, 1583 |
| AseI | ATTAAT | 1 cut(s) | 1398 |
| AspLEI | GCGC | 3 cut(s) | 44, 752, 1354 |
| AspS9I | GGNCC | 1 cut(s) | 604 |
| AsuC2I | CCSGG | 1 cut(s) | 1012 |
| AsuHPI | GGTGA | 3 cut(s) | 557, 1105, 1364 |
| AsuNHI | GCTAGC | 1 cut(s) | 869 |
| AvaII | GGWCC | 1 cut(s) | 604 |
| BanII | GRGCYC | 1 cut(s) | 1224 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1274, 1306 |
| BauI | CACGAG | 1 cut(s) | 1669 |
| BccI | CCATC | 4 cut(s) | 433, 542, 1199, 1238 |
| BceAI | ACGGC | 1 cut(s) | 29 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 711, 745 |
| BciT130I | CCWGG | 2 cut(s) | 1428, 1634 |
| BcnI | CCSGG | 1 cut(s) | 1012 |
| BcoDI | GTCTC | 5 cut(s) | 62, 278, 546, 1061, 1598 |
| BfaI | CTAG | 3 cut(s) | 530, 870, 1202 |
| BfmI | CTRYAG | 3 cut(s) | 516, 788, 1275 |
| BfoI | RGCGCY | 1 cut(s) | 753 |
| BglII | AGATCT | 1 cut(s) | 726 |
| BlpI | GCTNAGC | 1 cut(s) | 1006 |
| Bme1390I | CCNGG | 3 cut(s) | 1012, 1428, 1634 |
| Bme18I | GGWCC | 1 cut(s) | 604 |
| BmgT120I | GGNCC | 1 cut(s) | 604 |
| BmiI | GGNNCC | 2 cut(s) | 606, 1432 |
| BmrFI | CCNGG | 3 cut(s) | 1012, 1428, 1634 |
| BmsI | GCATC | 2 cut(s) | 328, 685 |
| BmtI | GCTAGC | 1 cut(s) | 873 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1006 |
| BpuEI | CTTGAG | 2 cut(s) | 1457, 1580 |
| BpuMI | CCSGG | 1 cut(s) | 1012 |
| BsaJI | CCNNGG | 3 cut(s) | 177, 451, 540 |
| BsaWI | WCCGGW | 1 cut(s) | 1374 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 389, 419, 610, 640 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 88, 1639 |
| Bse1I | ACTGG | 1 cut(s) | 354 |
| Bse3DI | GCAATG | 2 cut(s) | 20, 32 |
| BseBI | CCWGG | 2 cut(s) | 1428, 1634 |
| BseDI | CCNNGG | 3 cut(s) | 177, 451, 540 |
| BseGI | GGATG | 3 cut(s) | 78, 700, 1710 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 88, 1639 |
| BseMI | GCAATG | 2 cut(s) | 20, 32 |
| BseMII | CTCAG | 3 cut(s) | 330, 605, 1020 |
| BseNI | ACTGG | 1 cut(s) | 354 |
| BseRI | GAGGAG | 1 cut(s) | 731 |
| Bsh1236I | CGCG | 1 cut(s) | 410 |
| BshFI | GGCC | 1 cut(s) | 762 |
| BsiSI | CCGG | 3 cut(s) | 629, 1011, 1375 |
| BslFI | GGGAC | 2 cut(s) | 32, 590 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 88, 1639 |
| BsmAI | GTCTC | 5 cut(s) | 62, 278, 546, 1061, 1598 |
| BsmFI | GGGAC | 2 cut(s) | 32, 590 |
| BsnI | GGCC | 1 cut(s) | 762 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1224 |
| Bsp143I | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1006 |
| Bsp19I | CCATGG | 1 cut(s) | 177 |
| BspACI | CCGC | 6 cut(s) | 50, 196, 199, 408, 1145, 1319 |
| BspANI | GGCC | 1 cut(s) | 762 |
| BspCNI | CTCAG | 3 cut(s) | 329, 606, 1019 |
| BspFNI | CGCG | 1 cut(s) | 410 |
| BspLI | GGNNCC | 2 cut(s) | 606, 1432 |
| BspMAI | CTGCAG | 2 cut(s) | 520, 792 |
| BspOI | GCTAGC | 1 cut(s) | 873 |
| BspPI | GGATC | 3 cut(s) | 318, 1624, 1657 |
| BsrBI | CCGCTC | 1 cut(s) | 201 |
| BsrDI | GCAATG | 2 cut(s) | 20, 32 |
| BsrI | ACTGG | 1 cut(s) | 354 |
| BssECI | CCNNGG | 3 cut(s) | 177, 451, 540 |
| BssMI | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| BssSI | CACGAG | 1 cut(s) | 1669 |
| BssT1I | CCWWGG | 2 cut(s) | 177, 540 |
| Bst2BI | CACGAG | 1 cut(s) | 1669 |
| Bst2UI | CCWGG | 2 cut(s) | 1428, 1634 |
| Bst4CI | ACNGT | 7 cut(s) | 151, 173, 257, 439, 452, 473, 1535 |
| Bst6I | CTCTTC | 1 cut(s) | 435 |
| BstC8I | GCNNGC | 2 cut(s) | 871, 1136 |
| BstDEI | CTNAG | 4 cut(s) | 316, 614, 914, 1006 |
| BstDSI | CCRYGG | 2 cut(s) | 177, 451 |
| BstF5I | GGATG | 3 cut(s) | 78, 700, 1710 |
| BstFNI | CGCG | 1 cut(s) | 410 |
| BstH2I | RGCGCY | 1 cut(s) | 753 |
| BstHHI | GCGC | 3 cut(s) | 44, 752, 1354 |
| BstKTI | GATC | 6 cut(s) | 313, 688, 729, 1510, 1632, 1652 |
| BstMAI | GTCTC | 5 cut(s) | 62, 278, 546, 1061, 1598 |
| BstMBI | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 204, 326, 530, 1177, 1606 |
| BstNI | CCWGG | 2 cut(s) | 1428, 1634 |
| BstSCI | CCNGG | 3 cut(s) | 1010, 1426, 1632 |
| BstSFI | CTRYAG | 3 cut(s) | 516, 788, 1275 |
| BstUI | CGCG | 1 cut(s) | 410 |
| BstX2I | RGATCY | 2 cut(s) | 310, 726 |
| BstYI | RGATCY | 2 cut(s) | 310, 726 |
| BsuRI | GGCC | 1 cut(s) | 762 |
| BtgI | CCRYGG | 2 cut(s) | 177, 451 |
| BtsCI | GGATG | 3 cut(s) | 78, 700, 1710 |
| BtsI | GCAGTG | 1 cut(s) | 513 |
| BtsIMutI | CAGTG | 4 cut(s) | 147, 361, 513, 1159 |
| Cac8I | GCNNGC | 2 cut(s) | 871, 1136 |
| CfoI | GCGC | 3 cut(s) | 44, 752, 1354 |
| Cfr13I | GGNCC | 1 cut(s) | 604 |
| CsiI | ACCWGGT | 1 cut(s) | 1426 |
| Csp6I | GTAC | 1 cut(s) | 186 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1282, 1317 |
| CviAII | CATG | 7 cut(s) | 178, 294, 691, 950, 1131, 1181, 1653 |
| CviQI | GTAC | 1 cut(s) | 186 |
| DdeI | CTNAG | 4 cut(s) | 316, 614, 914, 1006 |
| DpnI | GATC | 6 cut(s) | 312, 687, 728, 1509, 1631, 1651 |
| DpnII | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| Eam1104I | CTCTTC | 1 cut(s) | 435 |
| EarI | CTCTTC | 1 cut(s) | 435 |
| EciI | GGCGGA | 1 cut(s) | 1160 |
| Eco130I | CCWWGG | 2 cut(s) | 177, 540 |
| Eco24I | GRGCYC | 1 cut(s) | 1224 |
| Eco32I | GATATC | 1 cut(s) | 785 |
| Eco47I | GGWCC | 1 cut(s) | 604 |
| Eco47III | AGCGCT | 1 cut(s) | 751 |
| Eco57I | CTGAAG | 2 cut(s) | 684, 1092 |
| EcoRI | GAATTC | 2 cut(s) | 1084, 1126 |
| EcoRII | CCWGG | 2 cut(s) | 1426, 1632 |
| EcoRV | GATATC | 1 cut(s) | 785 |
| EcoT14I | CCWWGG | 2 cut(s) | 177, 540 |
| EcoT38I | GRGCYC | 1 cut(s) | 1224 |
| ErhI | CCWWGG | 2 cut(s) | 177, 540 |
| FaeI | CATG | 7 cut(s) | 181, 297, 694, 953, 1134, 1184, 1656 |
| FaqI | GGGAC | 2 cut(s) | 32, 590 |
| FatI | CATG | 7 cut(s) | 177, 293, 690, 949, 1130, 1180, 1652 |
| FauI | CCCGC | 1 cut(s) | 57 |
| FblI | GTMKAC | 1 cut(s) | 1258 |
| FokI | GGATG | 3 cut(s) | 65, 707, 1717 |
| FriOI | GRGCYC | 1 cut(s) | 1224 |
| FspBI | CTAG | 3 cut(s) | 530, 870, 1202 |
| GlaI | GCGC | 3 cut(s) | 43, 751, 1353 |
| HaeII | RGCGCY | 1 cut(s) | 753 |
| HaeIII | GGCC | 1 cut(s) | 762 |
| HapII | CCGG | 3 cut(s) | 629, 1011, 1375 |
| HhaI | GCGC | 3 cut(s) | 44, 752, 1354 |
| Hin1II | CATG | 7 cut(s) | 181, 297, 694, 953, 1134, 1184, 1656 |
| Hin6I | GCGC | 3 cut(s) | 42, 750, 1352 |
| HinP1I | GCGC | 3 cut(s) | 42, 750, 1352 |
| HindIII | AAGCTT | 3 cut(s) | 125, 566, 1598 |
| HinfI | GANTC | 8 cut(s) | 271, 503, 1369, 1378, 1420, 1637, 1672, 1688 |
| HpaII | CCGG | 3 cut(s) | 629, 1011, 1375 |
| HphI | GGTGA | 3 cut(s) | 557, 1105, 1364 |
| Hpy166II | GTNNAC | 3 cut(s) | 1259, 1481, 1575 |
| Hpy188I | TCNGA | 3 cut(s) | 615, 901, 1642 |
| Hpy188III | TCNNGA | 4 cut(s) | 263, 1163, 1669, 1676 |
| Hpy8I | GTNNAC | 3 cut(s) | 1259, 1481, 1575 |
| Hpy99I | CGWCG | 2 cut(s) | 215, 218 |
| HpyAV | CCTTC | 6 cut(s) | 27, 36, 401, 965, 1108, 1276 |
| HpyCH4III | ACNGT | 7 cut(s) | 151, 173, 257, 439, 452, 473, 1535 |
| HpyCH4IV | ACGT | 1 cut(s) | 1659 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 204, 326, 530, 1177, 1606 |
| HpyF3I | CTNAG | 4 cut(s) | 316, 614, 914, 1006 |
| HpySE526I | ACGT | 1 cut(s) | 1659 |
| Hsp92II | CATG | 7 cut(s) | 181, 297, 694, 953, 1134, 1184, 1656 |
| HspAI | GCGC | 3 cut(s) | 42, 750, 1352 |
| Kzo9I | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| LmnI | GCTCC | 3 cut(s) | 410, 631, 1208 |
| LweI | GCATC | 2 cut(s) | 328, 685 |
| MabI | ACCWGGT | 1 cut(s) | 1426 |
| MaeI | CTAG | 3 cut(s) | 530, 870, 1202 |
| MaeII | ACGT | 1 cut(s) | 1659 |
| MaeIII | GTNAC | 7 cut(s) | 130, 356, 419, 511, 1093, 1486, 1529 |
| MalI | GATC | 6 cut(s) | 312, 687, 728, 1509, 1631, 1651 |
| MbiI | CCGCTC | 1 cut(s) | 201 |
| MboI | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| MflI | RGATCY | 2 cut(s) | 310, 726 |
| MhlI | GDGCHC | 1 cut(s) | 1224 |
| MluCI | AATT | 8 cut(s) | 5, 66, 154, 462, 1084, 1126, 1234, 1323 |
| MlyI | GAGTC | 3 cut(s) | 280, 1414, 1681 |
| MmeI | TCCRAC | 3 cut(s) | 693, 946, 1682 |
| MseI | TTAA | 6 cut(s) | 153, 573, 797, 1398, 1526, 1694 |
| MslI | CAYNNNNRTG | 1 cut(s) | 693 |
| MspA1I | CMGCKG | 2 cut(s) | 320, 923 |
| MspI | CCGG | 3 cut(s) | 629, 1011, 1375 |
| MspR9I | CCNGG | 3 cut(s) | 1012, 1428, 1634 |
| MvaI | CCWGG | 2 cut(s) | 1428, 1634 |
| MvnI | CGCG | 1 cut(s) | 410 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 204, 326, 530, 1177, 1606 |
| NciI | CCSGG | 1 cut(s) | 1012 |
| NcoI | CCATGG | 1 cut(s) | 177 |
| NdeII | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| NheI | GCTAGC | 1 cut(s) | 869 |
| NlaIII | CATG | 7 cut(s) | 181, 297, 694, 953, 1134, 1184, 1656 |
| NlaIV | GGNNCC | 2 cut(s) | 606, 1432 |
| NmeAIII | GCCGAG | 2 cut(s) | 710, 788 |
| NmuCI | GTSAC | 5 cut(s) | 356, 419, 511, 1093, 1486 |
| PfeI | GAWTC | 5 cut(s) | 503, 1369, 1378, 1637, 1688 |
| PfoI | TCCNGGA | 1 cut(s) | 1632 |
| PleI | GAGTC | 3 cut(s) | 279, 1414, 1680 |
| PpsI | GAGTC | 3 cut(s) | 279, 1414, 1680 |
| PshBI | ATTAAT | 1 cut(s) | 1398 |
| Psp6I | CCWGG | 2 cut(s) | 1426, 1632 |
| PspGI | CCWGG | 2 cut(s) | 1426, 1632 |
| PspN4I | GGNNCC | 2 cut(s) | 606, 1432 |
| PspPI | GGNCC | 1 cut(s) | 604 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 466, 498 |
| PstI | CTGCAG | 2 cut(s) | 520, 792 |
| PsuI | RGATCY | 2 cut(s) | 310, 726 |
| PvuII | CAGCTG | 2 cut(s) | 320, 923 |
| RsaI | GTAC | 1 cut(s) | 187 |
| RsaNI | GTAC | 1 cut(s) | 186 |
| RseI | CAYNNNNRTG | 1 cut(s) | 693 |
| SaqAI | TTAA | 6 cut(s) | 153, 573, 797, 1398, 1526, 1694 |
| Sau3AI | GATC | 6 cut(s) | 310, 685, 726, 1507, 1629, 1649 |
| Sau96I | GGNCC | 1 cut(s) | 604 |
| SchI | GAGTC | 3 cut(s) | 280, 1414, 1681 |
| ScrFI | CCNGG | 3 cut(s) | 1012, 1428, 1634 |
| SduI | GDGCHC | 1 cut(s) | 1224 |
| SexAI | ACCWGGT | 1 cut(s) | 1426 |
| SfaNI | GCATC | 2 cut(s) | 328, 685 |
| SfcI | CTRYAG | 3 cut(s) | 516, 788, 1275 |
| SinI | GGWCC | 1 cut(s) | 604 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 693 |
| SmlI | CTYRAG | 2 cut(s) | 1472, 1595 |
| SmoI | CTYRAG | 2 cut(s) | 1472, 1595 |
| Sse9I | AATT | 8 cut(s) | 5, 66, 154, 462, 1084, 1126, 1234, 1323 |
| SsiI | CCGC | 6 cut(s) | 50, 196, 199, 408, 1145, 1319 |
| SspI | AATATT | 1 cut(s) | 1216 |
| SspMI | CTAG | 3 cut(s) | 530, 870, 1202 |
| StyD4I | CCNGG | 3 cut(s) | 1010, 1426, 1632 |
| StyI | CCWWGG | 2 cut(s) | 177, 540 |
| TaaI | ACNGT | 7 cut(s) | 151, 173, 257, 439, 452, 473, 1535 |
| TaiI | ACGT | 1 cut(s) | 1662 |
| TaqI | TCGA | 1 cut(s) | 843 |
| TaqII | GACCGA | 1 cut(s) | 592 |
| TasI | AATT | 8 cut(s) | 5, 66, 154, 462, 1084, 1126, 1234, 1323 |
| TauI | GCSGC | 2 cut(s) | 201, 1321 |
| TfiI | GAWTC | 5 cut(s) | 503, 1369, 1378, 1637, 1688 |
| Tru1I | TTAA | 6 cut(s) | 153, 573, 797, 1398, 1526, 1694 |
| Tru9I | TTAA | 6 cut(s) | 153, 573, 797, 1398, 1526, 1694 |
| TscAI | CASTG | 4 cut(s) | 154, 361, 520, 1159 |
| TseFI | GTSAC | 5 cut(s) | 356, 419, 511, 1093, 1486 |
| Tsp45I | GTSAC | 5 cut(s) | 356, 419, 511, 1093, 1486 |
| TspRI | CASTG | 4 cut(s) | 154, 361, 520, 1159 |
| VpaK11BI | GGWCC | 1 cut(s) | 604 |
| VspI | ATTAAT | 1 cut(s) | 1398 |
| XapI | RAATTY | 5 cut(s) | 66, 462, 1084, 1126, 1234 |
| XmiI | GTMKAC | 1 cut(s) | 1258 |
| XspI | CTAG | 3 cut(s) | 530, 870, 1202 |