Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004366

Physical Location & Seq

Genomic Coordinates Forward (+)

24301549 .. 24303369

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTTAGAGAAGCTGTTTTGAAGAATGGAGGTGGGTGGCACGGGCATGGGTGGGTTGGTGATGGAAAATGGATTGTAAAGAAAGGTAATGTTAGCTCAACAGGAAGATGTTTGAGCTGCAGTGAGCAGTTAGCTTGTGTAGATACCAATGAGGTAGAAACACAGAAGTTTGTGGATTCTTTGGTGGCTTTGGCTATGGAAAGGAAGGCAAAAATGAATTCATGTGAGTCAGATGTGGTCTTCAGCGAGTTTCAGGACTGGCTTGAGAAACATGGAGATTACGAAGCTATAGTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGTAGATGGCAGTTTCAGTCTTTCACAGGTTCTCCCATCTATTTTATGTATAAAAATATCAACAAATTTTCTTTTTTTTCATTTTTTTTTTTGTTTTAGAAACCCACTTAAGTATTCCACCAATGGACCACCAAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016074 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

5.76

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRORP	PF16953	32 - 109	1.2e-13	Protein-only RNase P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16650 AT2G16650 AT4G21900 AT5G60430 AT5G60430 AT5G60430 AT5G60430
fragaria_vesca	FvH4_3g24550 FvH4_3g24550 FvH4_3g24550
malus_domestica	MD03G1141100.v1.1 MD11G1171700.v1.1
prunus_persica	Prupe.6G126500_v2.0.a1
pyrus_communis	pycom03g09600
rosa_chinensis	RchiOBHm_Chr5g0043991
rosa_laevigata	RLG00000034233 RLG00000034235
rosa_multiflora	Rmu_sc0001157.1_g000006
rosa_roxburghii	Rroxscaffold_1G00037010
rosa_rugosa	Rorug05G0209600 Rorug05G0209700 Rorug05G0209700 Rorug05G0209800 Rorug05G0209900 Rorug05G0210000 Rorug05G0210100.1 Rorug05G0210200
rosa_samantha	Rh5AG294100 Rh5BG302500 Rh5CG329700 Rh5DG311300
rosa_wichuraiana	Rw5G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	217, 325, 394
AcuI	CTGAAG	1 cut(s)	226
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	5 cut(s)	14, 96, 117, 134, 287
AluI	AGCT	5 cut(s)	14, 96, 117, 134, 287
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	3 cut(s)	217, 325, 394
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	4 cut(s)	56, 290, 329, 373
BfmI	CTRYAG	2 cut(s)	118, 288
BfrI	CTTAAG	1 cut(s)	437
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bse1I	ACTGG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	263
BstAFI	CTTAAG	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	5
BstSFI	CTRYAG	2 cut(s)	118, 288
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	455
CviAII	CATG	3 cut(s)	47, 222, 272
CviJI	RGCY	9 cut(s)	14, 96, 117, 134, 188, 194, 262, 287, 313
CviKI_1	RGCY	9 cut(s)	14, 96, 117, 134, 188, 194, 262, 287, 313
DdeI	CTNAG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	3 cut(s)	50, 225, 275
FaiI	YATR	7 cut(s)	48, 197, 223, 273, 290, 376, 380
FatI	CATG	3 cut(s)	46, 221, 271
Fnu4HI	GCNGC	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	50, 225, 275
HinfI	GANTC	2 cut(s)	176, 227
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	50, 225, 275
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	4 cut(s)	87, 239, 244, 341
Lsp1109I	GCAGC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	34, 117, 232
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	217, 325, 394
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	23, 145
MseI	TTAA	2 cut(s)	438, 469
MslI	CAYNNNNRTG	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	437
NlaIII	CATG	3 cut(s)	50, 225, 275
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	438, 469
SatI	GCNGC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	9 cut(s)	16, 34, 88, 98, 119, 136, 156, 289, 360
SfcI	CTRYAG	2 cut(s)	118, 288
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	263, 437
SmoI	CTYRAG	2 cut(s)	263, 437
Sse9I	AATT	3 cut(s)	217, 325, 394
SspI	AATATT	1 cut(s)	307
TasI	AATT	3 cut(s)	217, 325, 394
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	438, 469
Tru9I	TTAA	2 cut(s)	438, 469
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	210, 230, 398
TspRI	CASTG	1 cut(s)	127
Vha464I	CTTAAG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	3 cut(s)	217, 325, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.