AT2G16700

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011901
Physical Location & Seq
Forward (+)
7244500 .. 7246069
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16700.3

Sequence Viewer

Length: 432 bp
ATGGCGATGGCTTTCAAGATGGCGACGACGGGGATGCGTGTGACGGATGAGTGTACGAGTTCATTCATGGACATGAAATGGAAGAAAGTTCATAGATACATCGTTTTCAAGATCGAAGAGAAGTCACGTAAAGTCACCGTCGATAAAGTCGGCGGCGCCGGTGAAAGCTACCACGATCTCGAAGATTCTTTACCGGTGGATGATTGTCGCTACGCTGTCTTTGATTTCGACTTTGTCACCGTCGATAACTGCCGCAAGAGCAAGATCTTCTTCATTGCATGGTCACCGGAGGCATCAAAGATAAGGGCAAAGATATTGTACGCAACGTCGAAAGATGGGCTGAGGAGAGTGTTGGAAGGGATTCACTATGAACTTCAAGCTACTGATCCGACGGAGATGGGTTTCGATATTATCCAAGACCGTGCCAAATAG

Protein Analysis

143

Amino Acids

16.47

Weight (kDa)

6.83

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 11 - 95 2.6e-20 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16700 AT2G16700 AT2G16700 AT4G34970
fragaria_vesca FvH4_2g01430
malus_domestica MD05G1119700.v1.1 MD10G1123400.v1.1
prunus_persica Prupe.8G163900_v2.0.a1
pyrus_communis pycom05g11370 pycom10g10570
rosa_chinensis RchiOBHm_Chr6g0244061 RchiOBHm_Chr6g0252411
rosa_laevigata RLG00000015386
rosa_multiflora Rmu_sc0006711.1_g000002
rosa_roxburghii Rroxscaffold_7G00216110
rosa_rugosa Rorug05G0507100
rosa_samantha Rh6AG021500 Rh6BG017200
rosa_wichuraiana Rw6G001770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AciI CCGC 2 cut(s) 153, 253
AclWI GGATC 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 2 cut(s) 55, 320
AgeI ACCGGT 1 cut(s) 193
AgsI TTSAA 3 cut(s) 16, 109, 377
AluBI AGCT 2 cut(s) 168, 380
AluI AGCT 2 cut(s) 168, 380
AlwI GGATC 1 cut(s) 380
AsiGI ACCGGT 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 4 cut(s) 127, 173, 229, 276
BanI GGYRCC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BbvCI CCTCAGC 1 cut(s) 341
BccI CCATC 3 cut(s) 13, 329, 391
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BfoI RGCGCY 1 cut(s) 159
BglII AGATCT 1 cut(s) 264
BisI GCNGC 2 cut(s) 154, 253
BlsI GCNGC 2 cut(s) 155, 254
BmiI GGNNCC 1 cut(s) 157
BmsI GCATC 2 cut(s) 24, 302
Bpu10I CCTNAGC 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 156
BsaWI WCCGGW 2 cut(s) 193, 286
Bse118I RCCGGY 2 cut(s) 158, 193
Bse3DI GCAATG 1 cut(s) 273
BseGI GGATG 3 cut(s) 39, 52, 205
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 358
BshNI GGYRCC 1 cut(s) 155
BshTI ACCGGT 1 cut(s) 193
BsiSI CCGG 3 cut(s) 159, 194, 287
Bsp143I GATC 4 cut(s) 111, 175, 264, 385
BspACI CCGC 2 cut(s) 153, 253
BspCNI CTCAG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 2 cut(s) 158, 193
BssAI RCCGGY 2 cut(s) 158, 193
BssMI GATC 4 cut(s) 111, 175, 264, 385
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 139, 241, 422
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 341
BstEII GGTNACC 1 cut(s) 282
BstF5I GGATG 3 cut(s) 39, 52, 205
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 4 cut(s) 114, 178, 267, 388
BstMBI GATC 4 cut(s) 111, 175, 264, 385
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstPI GGTNACC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 39, 52, 205
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 2 cut(s) 158, 193
Csp6I GTAC 2 cut(s) 54, 319
CspAI ACCGGT 1 cut(s) 193
CviAII CATG 3 cut(s) 67, 73, 279
CviJI RGCY 4 cut(s) 11, 168, 340, 380
CviKI_1 RGCY 4 cut(s) 11, 168, 340, 380
CviQI GTAC 2 cut(s) 54, 319
DdeI CTNAG 1 cut(s) 341
DinI GGCGCC 1 cut(s) 157
DpnI GATC 4 cut(s) 113, 177, 266, 387
DpnII GATC 4 cut(s) 111, 175, 264, 385
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco91I GGTNACC 1 cut(s) 282
EcoO65I GGTNACC 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
FaeI CATG 3 cut(s) 70, 76, 282
FaiI YATR 5 cut(s) 68, 74, 93, 280, 369
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 3 cut(s) 66, 72, 278
Fnu4HI GCNGC 2 cut(s) 154, 253
FokI GGATG 3 cut(s) 46, 59, 212
Fsp4HI GCNGC 2 cut(s) 154, 253
GlaI GCGC 1 cut(s) 157
GluI GCNGC 2 cut(s) 154, 253
HaeII RGCGCY 1 cut(s) 159
HapII CCGG 3 cut(s) 159, 194, 287
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 3 cut(s) 70, 76, 282
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 2 cut(s) 185, 361
HpaII CCGG 3 cut(s) 159, 194, 287
HphI GGTGA 4 cut(s) 127, 173, 229, 276
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 3 cut(s) 16, 109, 179
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 6 cut(s) 28, 31, 143, 245, 331, 394
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 3 cut(s) 139, 241, 422
HpyCH4IV ACGT 2 cut(s) 127, 326
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 2 cut(s) 127, 326
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 3 cut(s) 70, 76, 282
HspAI GCGC 1 cut(s) 156
KasI GGCGCC 1 cut(s) 155
Kzo9I GATC 4 cut(s) 111, 175, 264, 385
LpnPI CCDG 3 cut(s) 172, 207, 300
LweI GCATC 2 cut(s) 24, 302
MaeII ACGT 2 cut(s) 127, 326
MaeIII GTNAC 5 cut(s) 40, 123, 133, 235, 282
MalI GATC 4 cut(s) 113, 177, 266, 387
MboI GATC 4 cut(s) 111, 175, 264, 385
MboII GAAGA 5 cut(s) 94, 128, 194, 259, 262
MflI RGATCY 1 cut(s) 264
Mly113I GGCGCC 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 333, 413
MnlI CCTC 2 cut(s) 283, 336
MroXI GAANNNNTTC 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 3 cut(s) 159, 194, 287
MwoI GCNNNNNNNGC 1 cut(s) 258
NarI GGCGCC 1 cut(s) 156
NdeII GATC 4 cut(s) 111, 175, 264, 385
NlaIII CATG 3 cut(s) 70, 76, 282
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 5 cut(s) 40, 123, 133, 235, 282
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 185, 361
PflFI GACNNNGTC 1 cut(s) 233
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 2 cut(s) 155, 254
PluTI GGCGCC 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 128
PspEI GGTNACC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 264
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 2 cut(s) 55, 320
RsaNI GTAC 2 cut(s) 54, 319
RseI CAYNNNNRTG 1 cut(s) 71
SatI GCNGC 2 cut(s) 154, 253
Sau3AI GATC 4 cut(s) 111, 175, 264, 385
SetI ASST 4 cut(s) 130, 170, 329, 382
SfaNI GCATC 2 cut(s) 24, 302
SfoI GGCGCC 1 cut(s) 157
SgrAI CRCCGGYG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 71
SsiI CCGC 2 cut(s) 153, 253
SspDI GGCGCC 1 cut(s) 155
TaaI ACNGT 3 cut(s) 139, 241, 422
TaiI ACGT 2 cut(s) 130, 329
TaqI TCGA 7 cut(s) 114, 141, 180, 228, 243, 329, 405
TauI GCSGC 2 cut(s) 156, 255
TfiI GAWTC 2 cut(s) 185, 361
TseFI GTSAC 5 cut(s) 40, 123, 133, 235, 282
Tsp45I GTSAC 5 cut(s) 40, 123, 133, 235, 282
TspDTI ATGAA 6 cut(s) 51, 55, 80, 89, 262, 384
TspGWI ACGGA 2 cut(s) 59, 407
Tth111I GACNNNGTC 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.