pycom05g11370

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011901
Physical Location & Seq
Forward (+)
14914352 .. 14915757
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11370.3

Sequence Viewer

Length: 579 bp
ATGAACTGTATTCAGGCATTTCAGCAATCCTATCTTTTTATAAAGAGGAAGGCAAAGCAACACTTTGAGGACTCGGCCTTCAGAATCTCAGCACAGCAGAGAGCACAAGCAAAAGCAAAAGCAAAAATCCCCTTTCAAATTTCAGCAACCATGGCAATGGCTTTCAAGATGGCTACAACTGGGATGTGGGTGACCGATGAATGCAAGAACTCATTCATGGAGATGAAATGGAAGAAGGTTCACAGATACATTGTTTTCAAGATCGATGAGGAATCGAGGCTGGTGACCGTTGATAAAGTTGGTGGGCCAGGGGAAAACTATGATGATCTGGCAGCCTCCTTGCCCAAAGATGATTGCAGATATGCAGTCTTTGATTTTGATTTTGTCACTGTTGATAACTGCAGGAAGAGCAAACTCTTCTTCATTGCTTGGTCACCAAGTGAATCAAGGATTAGGGCCAAAATACTATATGCAACCTCCAAAGCTGGGCTGAGGAGAGTTTTAGATGGCATCAGCTATGAACTTCAGGCGACCGATCCGACCGAGATGGGGATGGATGTCGATCAAGGACAGGGCTAA

Protein Analysis

193

Amino Acids

21.93

Weight (kDa)

8.97

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16700 AT2G16700 AT2G16700 AT4G34970
fragaria_vesca FvH4_2g01430
malus_domestica MD05G1119700.v1.1 MD10G1123400.v1.1
prunus_persica Prupe.8G163900_v2.0.a1
pyrus_communis pycom05g11370 pycom10g10570
rosa_chinensis RchiOBHm_Chr6g0244061 RchiOBHm_Chr6g0252411
rosa_laevigata RLG00000015386
rosa_multiflora Rmu_sc0006711.1_g000002
rosa_roxburghii Rroxscaffold_7G00216110
rosa_rugosa Rorug05G0507100
rosa_samantha Rh6AG021500 Rh6BG017200
rosa_wichuraiana Rw6G001770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
AclWI GGATC 1 cut(s) 530
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 64, 509
AdeI CACNNNGTG 1 cut(s) 440
AfiI CCNNNNNNNGG 2 cut(s) 486, 549
AgsI TTSAA 3 cut(s) 137, 166, 259
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 2 cut(s) 485, 516
AluI AGCT 2 cut(s) 485, 516
Alw21I GWGCWC 1 cut(s) 106
AlwI GGATC 1 cut(s) 530
AoxI GGCC 3 cut(s) 75, 305, 456
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 305, 456
AsuHPI GGTGA 3 cut(s) 202, 295, 426
Bbv12I GWGCWC 1 cut(s) 106
BbvCI CCTCAGC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 344
BccI CCATC 4 cut(s) 163, 500, 541, 547
BciT130I CCWGG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 400
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 305, 456
BmrFI CCNGG 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 519
BmuI ACTGGG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 491
Bsa29I ATCGAT 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 150, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 486, 549
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 2 cut(s) 162, 423
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 150, 308
BseGI GGATG 3 cut(s) 189, 558, 562
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 2 cut(s) 486, 549
BseMI GCAATG 2 cut(s) 162, 423
BseMII CTCAG 2 cut(s) 102, 482
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 344
BseYI CCCAGC 1 cut(s) 485
Bsh1285I CGRYCG 2 cut(s) 534, 543
BshFI GGCC 3 cut(s) 77, 307, 458
BshVI ATCGAT 1 cut(s) 264
BsiEI CGRYCG 2 cut(s) 534, 543
BsiHKAI GWGCWC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 486, 549
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 3 cut(s) 77, 307, 458
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 4 cut(s) 261, 325, 535, 562
Bsp19I CCATGG 1 cut(s) 150
BspANI GGCC 3 cut(s) 77, 307, 458
BspCNI CTCAG 2 cut(s) 101, 483
BspDI ATCGAT 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 404
BspPI GGATC 1 cut(s) 530
BspQI GCTCTTC 1 cut(s) 401
BsrDI GCAATG 2 cut(s) 162, 423
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 150, 308
BssMI GATC 4 cut(s) 261, 325, 535, 562
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 8, 289, 391
Bst6I CTCTTC 2 cut(s) 401, 422
BstDEI CTNAG 2 cut(s) 88, 491
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 3 cut(s) 190, 283, 432
BstF5I GGATG 3 cut(s) 189, 558, 562
BstKTI GATC 4 cut(s) 264, 328, 538, 565
BstMBI GATC 4 cut(s) 261, 325, 535, 562
BstMCI CGRYCG 2 cut(s) 534, 543
BstMWI GCNNNNNNNGC 2 cut(s) 152, 408
BstNI CCWGG 1 cut(s) 309
BstPI GGTNACC 3 cut(s) 190, 283, 432
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 3 cut(s) 77, 307, 458
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 3 cut(s) 189, 558, 562
BtsIMutI CAGTG 1 cut(s) 387
Cfr13I GGNCC 2 cut(s) 305, 456
ClaI ATCGAT 1 cut(s) 264
CviAII CATG 2 cut(s) 151, 217
DdeI CTNAG 2 cut(s) 88, 491
DpnI GATC 4 cut(s) 263, 327, 537, 564
DpnII GATC 4 cut(s) 261, 325, 535, 562
DraIII CACNNNGTG 1 cut(s) 440
Eam1104I CTCTTC 2 cut(s) 401, 422
EarI CTCTTC 2 cut(s) 401, 422
Eco130I CCWWGG 1 cut(s) 150
Eco57I CTGAAG 2 cut(s) 64, 509
Eco91I GGTNACC 3 cut(s) 190, 283, 432
EcoO65I GGTNACC 3 cut(s) 190, 283, 432
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 154, 220
FaiI YATR 8 cut(s) 41, 152, 218, 321, 363, 469, 471, 519
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 2 cut(s) 150, 216
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 3 cut(s) 196, 565, 569
Fsp4HI GCNGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 333
GsaI CCCAGC 1 cut(s) 489
HaeIII GGCC 3 cut(s) 77, 307, 458
Hin1II CATG 2 cut(s) 154, 220
HinfI GANTC 4 cut(s) 71, 84, 272, 443
HphI GGTGA 3 cut(s) 202, 295, 426
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 83, 540
Hpy188III TCNNGA 2 cut(s) 166, 259
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 43, 88, 229
HpyCH4III ACNGT 3 cut(s) 8, 289, 391
HpyCH4V TGCA 5 cut(s) 204, 357, 365, 402, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 408
HpyF3I CTNAG 2 cut(s) 88, 491
Hsp92II CATG 2 cut(s) 154, 220
Kzo9I GATC 4 cut(s) 261, 325, 535, 562
LguI GCTCTTC 1 cut(s) 401
LpnPI CCDG 9 cut(s) 165, 266, 294, 314, 321, 388, 471, 512, 557
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 519
MaeIII GTNAC 4 cut(s) 190, 283, 385, 432
MalI GATC 4 cut(s) 263, 327, 537, 564
MboI GATC 4 cut(s) 261, 325, 535, 562
MboII GAAGA 4 cut(s) 244, 409, 412, 418
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 7 cut(s) 39, 61, 262, 270, 346, 486, 487
MroXI GAANNNNTTC 1 cut(s) 212
MslI CAYNNNNRTG 2 cut(s) 155, 221
MspR9I CCNGG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 152, 408
NcoI CCATGG 1 cut(s) 150
NdeII GATC 4 cut(s) 261, 325, 535, 562
NlaIII CATG 2 cut(s) 154, 220
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 4 cut(s) 190, 283, 385, 432
PciSI GCTCTTC 1 cut(s) 401
PctI GAATGC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 3 cut(s) 84, 272, 443
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PsiI TTATAA 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 307
PspEI GGTNACC 3 cut(s) 190, 283, 432
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 2 cut(s) 305, 456
PstI CTGCAG 1 cut(s) 404
RseI CAYNNNNRTG 2 cut(s) 155, 221
SapI GCTCTTC 1 cut(s) 401
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 4 cut(s) 261, 325, 535, 562
Sau96I GGNCC 2 cut(s) 305, 456
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 106
SetI ASST 4 cut(s) 240, 479, 487, 518
SfaNI GCATC 1 cut(s) 519
SfcI CTRYAG 1 cut(s) 400
SmiMI CAYNNNNRTG 2 cut(s) 155, 221
Sse9I AATT 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 8, 289, 391
TaqI TCGA 3 cut(s) 264, 275, 561
TaqII GACCGA 3 cut(s) 209, 548, 557
TasI AATT 1 cut(s) 138
TfiI GAWTC 3 cut(s) 84, 272, 443
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 4 cut(s) 190, 283, 385, 432
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 4 cut(s) 190, 283, 385, 432
TspDTI ATGAA 6 cut(s) 17, 205, 213, 239, 412, 534
TspRI CASTG 1 cut(s) 394
XapI RAATTY 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.