Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011901

Physical Location & Seq

Genomic Coordinates Forward (+)

13948167 .. 13949404

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCAATGGCTTTCAAGATGGCTACAACTGGGATGTGGGTGACTGATGAATGCAAGAAGTCATTCATGGAGATGAAATGGAAGAAAGTTCACAGATACATAGTTTTCAAGATTGATGAGGGATCGAGGCTGGTGACCGTTGACAAAGTTGGTGGGCCAGCGGAAAACTACGATGATCTGGCTGCCTCCTTGCCCAAAGACGATTGCAGATATGCAGTCTTTGATTTTGATTTTGTCACTGTTGATAACTGCAGGAAGAGCAAACTCTTCTTCATTGCTTGGTCACCAAGTGAATCAAGGATTAGGGCAAAAATACTATATGCAACCTCCAAAGCTGGGCTGAGGAGAGTTTTAGATGGCATCAGCTATGAACTTCAGGCGACCGATCCGACCGAGATGGGGATGGATCTCGATCAAGGACAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0044085 GO:0051017 GO:0061572 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

143

Amino Acids

16.15

Weight (kDa)

6.58

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16700 AT2G16700 AT2G16700 AT4G34970
fragaria_vesca	FvH4_2g01430
malus_domestica	MD05G1119700.v1.1 MD10G1123400.v1.1
prunus_persica	Prupe.8G163900_v2.0.a1
pyrus_communis	pycom05g11370 pycom10g10570
rosa_chinensis	RchiOBHm_Chr6g0244061 RchiOBHm_Chr6g0252411
rosa_laevigata	RLG00000015386
rosa_multiflora	Rmu_sc0006711.1_g000002
rosa_roxburghii	Rroxscaffold_7G00216110
rosa_rugosa	Rorug05G0507100
rosa_samantha	Rh6AG021500 Rh6BG017200
rosa_wichuraiana	Rw6G001770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	3 cut(s)	130, 380, 414
AcuI	CTGAAG	1 cut(s)	359
AdeI	CACNNNGTG	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	336, 399
AgsI	TTSAA	2 cut(s)	16, 109
AluBI	AGCT	2 cut(s)	335, 366
AluI	AGCT	2 cut(s)	335, 366
AlwI	GGATC	3 cut(s)	130, 380, 414
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	3 cut(s)	52, 145, 276
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	4 cut(s)	13, 350, 391, 397
BfmI	CTRYAG	1 cut(s)	250
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 399
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	12, 273
Bse8I	GATNNNNATC	1 cut(s)	411
BseGI	GGATG	2 cut(s)	39, 408
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	336, 399
BseMI	GCAATG	2 cut(s)	12, 273
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	335
Bsh1285I	CGRYCG	2 cut(s)	384, 393
BshFI	GGCC	1 cut(s)	157
BsiEI	CGRYCG	2 cut(s)	384, 393
BslI	CCNNNNNNNGG	2 cut(s)	336, 399
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	157
Bsp143I	GATC	5 cut(s)	122, 175, 385, 406, 412
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	254
BspPI	GGATC	3 cut(s)	130, 380, 414
BspQI	GCTCTTC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	12, 273
BsrI	ACTGG	1 cut(s)	34
BssMI	GATC	5 cut(s)	122, 175, 385, 406, 412
Bst4CI	ACNGT	2 cut(s)	139, 241
Bst6I	CTCTTC	2 cut(s)	251, 272
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	341
BstEII	GGTNACC	2 cut(s)	133, 282
BstF5I	GGATG	2 cut(s)	39, 408
BstKTI	GATC	5 cut(s)	125, 178, 388, 409, 415
BstMBI	GATC	5 cut(s)	122, 175, 385, 406, 412
BstMCI	CGRYCG	2 cut(s)	384, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstPI	GGTNACC	2 cut(s)	133, 282
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	39, 408
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	155
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	11, 23, 130, 157, 182, 335, 340, 366, 426
CviKI_1	RGCY	9 cut(s)	11, 23, 130, 157, 182, 335, 340, 366, 426
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	5 cut(s)	124, 177, 387, 408, 414
DpnII	GATC	5 cut(s)	122, 175, 385, 406, 412
DraIII	CACNNNGTG	1 cut(s)	290
Eam1104I	CTCTTC	2 cut(s)	251, 272
EarI	CTCTTC	2 cut(s)	251, 272
Eco57I	CTGAAG	1 cut(s)	359
Eco91I	GGTNACC	2 cut(s)	133, 282
EcoO65I	GGTNACC	2 cut(s)	133, 282
FaeI	CATG	1 cut(s)	70
FaiI	YATR	6 cut(s)	68, 101, 213, 319, 321, 369
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	46, 415
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	293
HphI	GGTGA	3 cut(s)	52, 145, 276
Hpy166II	GTNNAC	2 cut(s)	91, 142
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	16, 109, 410
Hpy8I	GTNNAC	2 cut(s)	91, 142
HpyCH4III	ACNGT	2 cut(s)	139, 241
HpyCH4V	TGCA	5 cut(s)	54, 207, 215, 252, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	122, 175, 385, 406, 412
LguI	GCTCTTC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	15, 116, 164, 171, 238, 321, 362, 407
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	369
MaeIII	GTNAC	4 cut(s)	40, 133, 235, 282
MalI	GATC	5 cut(s)	124, 177, 387, 408, 414
MboI	GATC	5 cut(s)	122, 175, 385, 406, 412
MboII	GAAGA	4 cut(s)	94, 259, 262, 268
MflI	RGATCY	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	5 cut(s)	112, 120, 196, 336, 337
MroXI	GAANNNNTTC	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeII	GATC	5 cut(s)	122, 175, 385, 406, 412
NlaIII	CATG	1 cut(s)	70
NmuCI	GTSAC	4 cut(s)	40, 133, 235, 282
PciSI	GCTCTTC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	184
PspEI	GGTNACC	2 cut(s)	133, 282
PspFI	CCCAGC	1 cut(s)	335
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	251
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	5 cut(s)	122, 175, 385, 406, 412
Sau96I	GGNCC	1 cut(s)	155
SetI	ASST	3 cut(s)	329, 337, 368
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	71
SsiI	CCGC	1 cut(s)	161
TaaI	ACNGT	2 cut(s)	139, 241
TaqI	TCGA	2 cut(s)	125, 411
TaqII	GACCGA	2 cut(s)	398, 407
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	4 cut(s)	40, 133, 235, 282
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	4 cut(s)	40, 133, 235, 282
TspDTI	ATGAA	5 cut(s)	55, 63, 89, 262, 384
TspRI	CASTG	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.