Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Forward (+)

7279366 .. 7281499

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGACGACGGTGAGCTTGAGTTTTCGAATTCAAACATGGGTGGTGAATTACCTAGCTGTTCGATGGATTCGTTCTTCGATGAGCTTTTGAGAGATTCTCATGCTTGTACTCATACTCACACTTGTAATCCTCCGGGACCAGAGAACACACATACTCACACATGTCTCCATGTGCACACCAAGATTCTTCCTGACAAAGTTTCTACTGATGATACATCGGAATCTTCAGGGAAGAAGAGACCTTTAGGGAATAGAGAAGCGGTTAGAAAGTATAGGGAGAAGAAGAAGGCTAAAGCGGCTTCGTTGGAGGATGAGGTTATGAGGCTTAAGGCGGTTAATAATCAGCTGTTGAAGAGGTTGCAAGGTCAAGCTGCATTGGAAGCTGAGGTTACTAGGCTCAAGTGTTTGCTTGTTGATATAAGAGGAAGAATTGATGGAGAGATTGGTGCGTTTCCTTATCAGAAACCTGCGGTTACAAACGTGCCTTACTCATACATGATGCATCCTTGCAATATGCAATGTGATGTTGATAACTTGTACTGCCTTCAAAATGGGAATAATGGAGAAGGTGCATCGATGAATGAGCAAGGGCTAAATGGTTGTGAGTTTGATCAGCTAGAATGCTTGGCTAATCAGAATTTAGCTGGCAAGGAGATCCCTGTTTGTAGTAATGGAATTGGAACATTCACTGTCAATGGATCCGGCGTTAATAAGAGAAAAGGTGAGCCTCGAGCAGCGAAAGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

249

Amino Acids

27.3

Weight (kDa)

6.08

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	73 - 127	6.3e-13	Basic region leucine zipper
bZIP_1	PF00170	79 - 122	3.9e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AciI	CCGC	4 cut(s)	260, 296, 332, 470
AclWI	GGATC	3 cut(s)	649, 693, 706
AcsI	RAATTY	2 cut(s)	28, 637
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	109, 539
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	33, 352, 548
AluBI	AGCT	8 cut(s)	16, 57, 85, 346, 371, 383, 616, 644
AluI	AGCT	8 cut(s)	16, 57, 85, 346, 371, 383, 616, 644
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	170, 232
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	3 cut(s)	649, 693, 706
Ama87I	CYCGRG	1 cut(s)	729
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	371, 734
ApoI	RAATTY	2 cut(s)	28, 637
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	23, 56, 734
AsuII	TTCGAA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	358, 746
BccI	CCATC	2 cut(s)	58, 428
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	170, 232
BfaI	CTAG	3 cut(s)	54, 393, 617
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	3 cut(s)	297, 372, 735
BlsI	GCNGC	3 cut(s)	298, 373, 736
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	138, 700
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	489, 511, 581
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	38, 383
BpuMI	CCSGG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	575
BseGI	GGATG	2 cut(s)	316, 502
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	358, 746
BshVI	ATCGAT	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	134, 702
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	2 cut(s)	170, 232
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	626
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	729
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	610, 654, 698
BspACI	CCGC	4 cut(s)	260, 296, 332, 470
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	575
BspLI	GGNNCC	2 cut(s)	138, 700
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	3 cut(s)	649, 693, 706
BspT104I	TTCGAA	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	524
BssMI	GATC	3 cut(s)	610, 654, 698
Bst4CI	ACNGT	2 cut(s)	11, 691
Bst6I	CTCTTC	2 cut(s)	230, 347
BstAFI	CTTAAG	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	316, 502
BstKTI	GATC	3 cut(s)	613, 657, 701
BstMAI	GTCTC	2 cut(s)	170, 232
BstMBI	GATC	3 cut(s)	610, 654, 698
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 380, 740
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	358, 746
BstX2I	RGATCY	2 cut(s)	654, 698
BstYI	RGATCY	2 cut(s)	654, 698
Bsu15I	ATCGAT	1 cut(s)	575
BsuTUI	ATCGAT	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	316, 502
BtsIMutI	CAGTG	1 cut(s)	687
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	108, 538
CviAII	CATG	5 cut(s)	37, 101, 162, 170, 496
CviQI	GTAC	2 cut(s)	108, 538
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	612, 656, 700
DpnII	GATC	3 cut(s)	610, 654, 698
Eam1104I	CTCTTC	2 cut(s)	230, 347
EarI	CTCTTC	2 cut(s)	230, 347
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	729
EcoRI	GAATTC	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	504
FaeI	CATG	5 cut(s)	40, 104, 165, 173, 499
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	5 cut(s)	36, 100, 161, 169, 495
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	297, 372, 735
FokI	GGATG	2 cut(s)	323, 489
Fsp4HI	GCNGC	3 cut(s)	297, 372, 735
FspBI	CTAG	3 cut(s)	54, 393, 617
GluI	GCNGC	3 cut(s)	297, 372, 735
HapII	CCGG	2 cut(s)	134, 702
Hin1II	CATG	5 cut(s)	40, 104, 165, 173, 499
HinfI	GANTC	4 cut(s)	68, 95, 184, 221
HpaII	CCGG	2 cut(s)	134, 702
HphI	GGTGA	3 cut(s)	23, 56, 734
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	220, 462, 636
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	280, 554, 560
HpyCH4III	ACNGT	2 cut(s)	11, 691
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	7 cut(s)	175, 361, 374, 502, 510, 517, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 380, 740
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	5 cut(s)	40, 104, 165, 173, 499
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	610, 654, 698
LpnPI	CCDG	8 cut(s)	147, 153, 204, 213, 480, 630, 672, 715
Lsp1109I	GCAGC	2 cut(s)	358, 746
LweI	GCATC	3 cut(s)	489, 511, 581
MaeI	CTAG	3 cut(s)	54, 393, 617
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	388, 472
MalI	GATC	3 cut(s)	612, 656, 700
MboI	GATC	3 cut(s)	610, 654, 698
MboII	GAAGA	9 cut(s)	67, 179, 216, 244, 247, 292, 295, 364, 438
MflI	RGATCY	2 cut(s)	654, 698
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	5 cut(s)	28, 47, 429, 637, 675
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	8 cut(s)	141, 301, 307, 315, 348, 379, 416, 738
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	3 cut(s)	327, 336, 708
MspA1I	CMGCKG	1 cut(s)	346
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	2 cut(s)	134, 702
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	626
MwoI	GCNNNNNNNGC	3 cut(s)	296, 380, 740
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	610, 654, 698
NlaIII	CATG	5 cut(s)	40, 104, 165, 173, 499
NlaIV	GGNNCC	2 cut(s)	138, 700
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	729
PciI	ACATGT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	626
PfeI	GAWTC	4 cut(s)	68, 95, 184, 221
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	298, 373, 736
PscI	ACATGT	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	138, 700
PspPI	GGNCC	1 cut(s)	137
PspXI	VCTCGAGB	1 cut(s)	729
PsuI	RGATCY	2 cut(s)	654, 698
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	2 cut(s)	109, 539
RsaNI	GTAC	2 cut(s)	108, 538
SaqAI	TTAA	3 cut(s)	327, 336, 708
SatI	GCNGC	3 cut(s)	297, 372, 735
Sau3AI	GATC	3 cut(s)	610, 654, 698
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	489, 511, 581
Sfr274I	CTCGAG	1 cut(s)	729
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	729
SmlI	CTYRAG	4 cut(s)	17, 326, 398, 729
SmoI	CTYRAG	4 cut(s)	17, 326, 398, 729
Sse9I	AATT	5 cut(s)	28, 47, 429, 637, 675
SsiI	CCGC	4 cut(s)	260, 296, 332, 470
SspMI	CTAG	3 cut(s)	54, 393, 617
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	11, 691
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	5 cut(s)	26, 62, 78, 575, 730
TasI	AATT	5 cut(s)	28, 47, 429, 637, 675
TatI	WGTACW	2 cut(s)	107, 537
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	4 cut(s)	68, 95, 184, 221
Tru1I	TTAA	3 cut(s)	327, 336, 708
Tru9I	TTAA	3 cut(s)	327, 336, 708
TscAI	CASTG	1 cut(s)	694
TseI	GCWGC	2 cut(s)	371, 734
TspDTI	ATGAA	1 cut(s)	593
TspRI	CASTG	1 cut(s)	694
Vha464I	CTTAAG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	28, 637
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	729
XspI	CTAG	3 cut(s)	54, 393, 617
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.