Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Forward (+)

68703854 .. 68710029

Gene Structure 6176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0504400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3327 bp

ATGCCGACGCCGGTAGGCGCAGCCAGGCAATGTTTGACGGAGGAGGCGGCGCGTGCGCTGGACGACGCAGTGGCCGTGGCGCGTAGGAGGAGCCACGCGCAGACGACGTCGCTCCATGCGGTGTCGGCTCTGCTCTCCCTGCCGTCCTCTGCTCTCCGCGACGCCTGCTCACGCGCCAGGAGCGGCGCGTACCCGTACACGCCGCGGCTCCAGTTCCGGGCGCTGGAGCTGTCCGTCGGGGTGTCGCTGGACCGGCTGCCGTCGTCGACGAAGGCGCAGGAGGAGCCGCCGGTGTCGAACTCGCTGATGGCGGCGATCAAGCGGTCGCAGGCGAACCAGAGGCGGCACCCGGAGAGCTTCCACCTGCACCAGATCCACAGCCAGCAGCAGACGGCGTCGCTTCTGAAGGTCGAGCTCAAGCACTTCATGCTGTCCATTCTCGACGACCCGATTGTGAGTCGGGTCTTCGGGGAGGCCGGGTTCCGGAGCTGTGACATAAAGCTCGCGATTGTTCACCCGCCGGTGACGCCGCAATCCAATCGGCTGCCTCGGACTCTGTGCCCGCCCATTTTCCTATGCAACCTAACGGACTCGGACCCCGCTGCCCGTCGGAGATTCCCTTTCCCGTTCTCGGGGTTCGAGGAAAAGGACGAGAACTGCAAGAGAATCGGGGACGTGTTGGTTAGAAAGAGCGGGAAAAATCCGTTACTGATCGGCGTTTCCGCCGCTGAAGCTCTCAAAAGGTTCATTGAAGCGGTACAGAATGGCAGAGCCTCCTCCCTTTTGCCTCCTGAGGTAAGTAGCTTTAGTGTAGTTAGTATGGAAGAGGAGATTTCGGAGTTTGTGGTTGAGGGTGGGAGTGAAGAGAAGATGGGGTTGAAGTTGAAGGAGGTGGGTCATTTGGCTCAGCAATGTTCTGGAGATGGAGGAGCTGGTGTGATAGTCAACTTTGGGGAAATGAAGGCTTTGGTTGATGACGGGGTGTTGAGTGATGCTTTGAGCTTTGTGGTGGTTCAGTTGAAGGGGTTGCTGGAGATTCATAGTGGCAAGTTGTGGTTGATCGGCGCGGCGGGGAGTTACGACATGTATATGAAACTTTTGGCTCGGTTTCCCGCTATCGAGAAGGATTGGGACCTTCATCTCCTTCCCATTAGCTCTTCTAAAGCTTCAGTCGATGGAGTCTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGGGGATTCTTCTCTGGACCATCTGACTTTACAAATCCACCGAGCAGCACGAATCAATCTTTTATACGCTGCCATCAATGCACAGAGAAGTATGAGCAAGAAGTTGCTTCTATTCGGAAAGATGGATCAGCCATTACAGTTGGTGATCAGTGCTCAACTAGCTCACCTTCTTGGTTGCAAACGATTGAACTTGACCCTGGCAAGGGAGTGGATCTTGCAAAGACCAAAGCAGATAATACGACATTGAGTGAAACAGTATTGGGACTGCAAAAGAAATGGAATGATATCTGCCGAAAAATTCATCATGGTCAACCATTCCCTAAAATGGACAATTGTCAAGCTGGGTCTCATGTTGCATCTCCTGAGGGCTCTCATACTGCTGCAGATAGAAGAGAAAGCAGCGGTGAAGATTCATCTATACAGGAAAGCCGAAGTGCAAAACATCACTGCCTTCCAATGGACATGCAAACGAGTTTTCTGTCAAAACAGAACTTGGTAATGCAAGTAGCTTCTGATGCTGAGTATGCTGGTATGCAATCCAAGCAATTGATCAGAGATTCAAAGGGTCAGCAACTTGAACTGGGAAGCCCCTGCCGTTCACCTTTCCCAATCCCCACTATGAATCTTCCCACTGATCGCACATCATCCTCATCTGTCACTTCGGTGACCACAGATTTAGGATTGGGAACCTTATATGCATCAACTAGAAAGGGACCAAGAAGTCCCAAGTTGCAAGATCATAGAGAGCGTCTCCGACACCTTTCTGGTTCCATTTCTGCTGAATTCGATGCATTAAGTGAGAATAGTCCGCACCAAATAGCCCAGTCCTCTTCCTGCTCTGGATCTAATTTTGGTGGGCAGTTTGATCCAAGAGATTTCAAGTCACTTAGGAGAGTTCTCACAGAAAAGGTTTACTGGCAAGATGAAGCAATATGCACCATTAGTGAAGCTATATCCCGGTGCAGGTCTGGTGGTGGAAGGCATCATGGTTCAAAGGGCAGAGGAGATATATGGTTGACTTTGATTGGACCCGACAGGGTTGGAAAGAAGAAAATTGCTATAGCACTTGCAGAGTTAATGTTTGGAACTAGGGAAAGCCTAATCTCTGTTGATATGGGGGAGAGGGGATGCCAATCTGACTCTATTTTTCAATGGGAATCCCAAGATGATTATGATGTGAAGTTTAGGGGTAAGACGGCTGTAGATTATGTTGCTGGGGAATTAAGCAGGAGACCCCATTCAGTTGTCTTCCTTGAAAATGTAGATAAGGCTGATTTTCTGGCCCAGAGTAACTTGTCCCAGGCCATTAGGACTGGCAAGTTTCCAGACTCTCACGGCAGAGAAATCAGCATTAACAACATGATCTTTGTAACGACTTCAGCTACCAAAAAGGGCAGCAAAAATCACTACTTGGAGAATGAACCCCTGAAATTCTCAGAGGAGATGGTACTTGGTGCCAAGAGGTGTCAAATGCAAATACTGAATATTGGGGATGCCAGCCAAACAAAGGGCATGAATGTGAGGATTGCACCAAGAGAAGGAAGCTTAAACTCATCTTCTGTAAATAAGAGAAAGCTGATTGACAGCAGTGCCTCCATAGAGGAAACCTCAGAGTTACAGAAACGGGGCAACAAGGCATCAAGGTCCTTTCTGGATTTGAATCTGCCTGTTGAAGAGATAGACGAGGGAATGAACTGTGGAGATTATGACAGTGACTCCATCTCCGAAAACTCAGAAGCCTGGATGGAAGACTTCCTTGATCAAGTTGATGAAGCAGTGGTTTTGAAGCCATTCAACTTCGACGCTCTTGCTGAGAAATTAGTAAAGGAAATCAACCAAGAATTTAAGAAAGTCTTGGGATCTGAGTATCAGCTGGAGATTGACTTTGGAGTCATGGTTCAATTACTTGCAGCTTGTTGGTTATCAGACAAGAAGAAAGCAGTGGAGGAGTGGATTGAACAGGTTCTCTCCAGAAGTTTTGCTGAAACACGTCAGAGGTATCGTCTCACTGCTCATTCTGTAATAAAATTGGTTGCCGGTGGAGCACTTTCGGTGCAAGAGCAGACTCCCGGTGTTTGCCTTCCTGCTAGAATTAGTCTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

1108

Amino Acids

121.61

Weight (kDa)

6.49

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	12 - 116	2.1e-06	Clp repeat (R) N-terminal domain
NBD_SMAX1	PF23569	216 - 389	2.1e-15	SMAX1 nucleotide binding domain
AAA_2	PF07724	747 - 876	7.4e-14	AAA domain (Cdc48 subfamily)
AAA_lid_SMAX1	PF26587	1006 - 1086	9.4e-31	SMAX1-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	372
AasI	GACNNNNNNGTC	2 cut(s)	1941, 3110
AatII	GACGTC	1 cut(s)	110
Acc36I	ACCTGC	2 cut(s)	372, 2175
AccB1I	GGYRCC	2 cut(s)	345, 2675
AccBSI	CCGCTC	2 cut(s)	183, 693
AccI	GTMKAC	2 cut(s)	266, 1182
AccII	CGCG	9 cut(s)	52, 82, 98, 159, 174, 188, 205, 506, 1067
AccIII	TCCGGA	1 cut(s)	483
AclWI	GGATC	6 cut(s)	367, 1354, 1440, 2071, 2081, 3088
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	4 cut(s)	1518, 2003, 2651, 3062
AcuI	CTGAAG	4 cut(s)	425, 750, 1152, 2583
AcyI	GRCGYC	5 cut(s)	8, 107, 162, 395, 527
AfaI	GTAC	4 cut(s)	191, 197, 759, 2670
AflIII	ACRYGT	3 cut(s)	675, 1083, 3209
AjiI	CACGTC	2 cut(s)	676, 3212
AjnI	CCWGG	5 cut(s)	23, 176, 1417, 2520, 2960
AleI	CACNNNNGTG	1 cut(s)	1883
AloI	GAACNNNNNNTCC	4 cut(s)	464, 496, 3102, 3134
Alw21I	GWGCWC	3 cut(s)	417, 1376, 3268
Alw26I	GTCTC	4 cut(s)	1572, 1976, 2446, 3230
AlwI	GGATC	6 cut(s)	367, 1354, 1440, 2071, 2081, 3088
Ama87I	CYCGRG	1 cut(s)	631
Aor13HI	TCCGGA	1 cut(s)	483
AoxI	GGCC	4 cut(s)	72, 474, 2502, 2523
ApoI	RAATTY	4 cut(s)	1518, 2003, 2651, 3062
Asp700I	GAANNNNTTC	2 cut(s)	3011, 3183
AspS9I	GGNCC	9 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2503, 2865
AsuC2I	CCSGG	5 cut(s)	218, 350, 478, 2179, 3291
AsuHPI	GGTGA	7 cut(s)	506, 535, 1376, 1377, 1637, 1812, 1897
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	8 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2865
AxyI	CCTNAGG	2 cut(s)	792, 1584
BaeGI	GKGCMC	1 cut(s)	563
BanI	GGYRCC	2 cut(s)	345, 2675
BanII	GRGCYC	2 cut(s)	417, 1592
BbsI	GAAGAC	3 cut(s)	457, 2461, 2976
Bbv12I	GWGCWC	3 cut(s)	417, 1376, 3268
BceAI	ACGGC	7 cut(s)	59, 127, 244, 408, 1800, 2433, 2572
BcgI	CGANNNNNNTGC	6 cut(s)	521, 555, 649, 683, 3011, 3045
BciT130I	CCWGG	5 cut(s)	25, 178, 1419, 2522, 2962
BclI	TGATCA	3 cut(s)	1366, 1770, 2980
BcnI	CCSGG	5 cut(s)	218, 350, 478, 2179, 3291
BcoDI	GTCTC	4 cut(s)	1572, 1976, 2446, 3230
BfaI	CTAG	4 cut(s)	1380, 1926, 2310, 3309
BfmI	CTRYAG	3 cut(s)	1602, 2280, 2421
BfoI	RGCGCY	1 cut(s)	224
BfuAI	ACCTGC	2 cut(s)	372, 2175
BlpI	GCTNAGC	1 cut(s)	906
Bme18I	GGWCC	8 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2865
BmeT110I	CYCGRG	1 cut(s)	631
BmgBI	CACGTC	2 cut(s)	676, 3212
BmgT120I	GGNCC	9 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2503, 2865
BmrI	ACTGGG	2 cut(s)	1811, 2038
BmsI	GCATC	9 cut(s)	982, 1586, 1726, 1928, 1999, 2212, 2339, 2704, 2867
BmuI	ACTGGG	2 cut(s)	1811, 2038
BoxI	GACNNNNGTC	1 cut(s)	1554
BpiI	GAAGAC	3 cut(s)	457, 2461, 2976
BplI	GAGNNNNNCTC	4 cut(s)	1956, 1988, 2813, 2845
BpmI	CTGGAG	6 cut(s)	194, 245, 939, 1052, 3116, 3175
Bpu1102I	GCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	5 cut(s)	218, 350, 478, 2179, 3291
BsaBI	GATNNNNATC	2 cut(s)	2353, 2880
BsaHI	GRCGYC	5 cut(s)	8, 107, 162, 395, 527
BsaI	GGTCTC	2 cut(s)	1572, 2446
BsaJI	CCNNGG	5 cut(s)	75, 203, 548, 1417, 2520
BsaWI	WCCGGW	1 cut(s)	483
Bse118I	RCCGGY	5 cut(s)	10, 252, 289, 520, 3257
Bse1I	ACTGG	5 cut(s)	211, 1806, 2044, 2141, 2539
Bse21I	CCTNAGG	2 cut(s)	792, 1584
Bse3DI	GCAATG	2 cut(s)	35, 917
Bse8I	GATNNNNATC	2 cut(s)	2353, 2880
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	5 cut(s)	25, 178, 1419, 2522, 2962
BseDI	CCNNGG	5 cut(s)	75, 203, 548, 1417, 2520
BseGI	GGATG	4 cut(s)	1865, 2354, 2719, 2970
BseJI	GATNNNNATC	2 cut(s)	2353, 2880
BseMI	GCAATG	2 cut(s)	35, 917
BseMII	CTCAG	9 cut(s)	783, 920, 1575, 1731, 2670, 2844, 2967, 3024, 3075
BseNI	ACTGG	5 cut(s)	211, 1806, 2044, 2141, 2539
BseRI	GAGGAG	9 cut(s)	56, 103, 296, 766, 842, 942, 2238, 2675, 3182
BseSI	GKGCMC	1 cut(s)	563
BseYI	CCCAGC	2 cut(s)	1562, 2435
BsgI	GTGCAG	2 cut(s)	350, 2203
Bsh1236I	CGCG	9 cut(s)	52, 82, 98, 159, 174, 188, 205, 506, 1067
Bsh1285I	CGRYCG	1 cut(s)	326
BshFI	GGCC	4 cut(s)	74, 476, 2504, 2525
BshNI	GGYRCC	2 cut(s)	345, 2675
BsiEI	CGRYCG	1 cut(s)	326
BsiHKAI	GWGCWC	3 cut(s)	417, 1376, 3268
BsiHKCI	CYCGRG	1 cut(s)	631
BslFI	GGGAC	6 cut(s)	686, 1145, 1497, 1929, 1947, 2503
BsmAI	GTCTC	4 cut(s)	1572, 1976, 2446, 3230
BsmBI	CGTCTC	2 cut(s)	1976, 3230
BsmFI	GGGAC	6 cut(s)	686, 1145, 1497, 1929, 1947, 2503
BsnI	GGCC	4 cut(s)	74, 476, 2504, 2525
Bso31I	GGTCTC	2 cut(s)	1572, 2446
BsoBI	CYCGRG	1 cut(s)	631
Bsp1286I	GDGCHC	5 cut(s)	417, 563, 1376, 1592, 3268
Bsp13I	TCCGGA	1 cut(s)	483
Bsp1720I	GCTNAGC	1 cut(s)	906
Bsp68I	TCGCGA	1 cut(s)	506
BspANI	GGCC	4 cut(s)	74, 476, 2504, 2525
BspCNI	CTCAG	9 cut(s)	784, 919, 1576, 1732, 2669, 2843, 2966, 3025, 3076
BspEI	TCCGGA	1 cut(s)	483
BspFNI	CGCG	9 cut(s)	52, 82, 98, 159, 174, 188, 205, 506, 1067
BspMAI	CTGCAG	1 cut(s)	1606
BspMI	ACCTGC	2 cut(s)	372, 2175
BspPI	GGATC	6 cut(s)	367, 1354, 1440, 2071, 2081, 3088
BspQI	GCTCTTC	1 cut(s)	1162
BspT107I	GGYRCC	2 cut(s)	345, 2675
BspTNI	GGTCTC	2 cut(s)	1572, 2446
BsrBI	CCGCTC	2 cut(s)	183, 693
BsrDI	GCAATG	2 cut(s)	35, 917
BsrFI	RCCGGY	5 cut(s)	10, 252, 289, 520, 3257
BsrI	ACTGG	5 cut(s)	211, 1806, 2044, 2141, 2539
BssAI	RCCGGY	5 cut(s)	10, 252, 289, 520, 3257
BssECI	CCNNGG	5 cut(s)	75, 203, 548, 1417, 2520
BssNI	GRCGYC	5 cut(s)	8, 107, 162, 395, 527
Bst2UI	CCWGG	5 cut(s)	25, 178, 1419, 2522, 2962
Bst4CI	ACNGT	4 cut(s)	1360, 1477, 2918, 2933
Bst6I	CTCTTC	6 cut(s)	819, 858, 1162, 1606, 2056, 2889
BstACI	GRCGYC	5 cut(s)	8, 107, 162, 395, 527
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstC8I	GCNNGC	7 cut(s)	54, 166, 330, 383, 504, 563, 2719
BstDSI	CCRYGG	2 cut(s)	75, 203
BstEII	GGTNACC	1 cut(s)	1885
BstF5I	GGATG	4 cut(s)	1865, 2354, 2719, 2970
BstFNI	CGCG	9 cut(s)	52, 82, 98, 159, 174, 188, 205, 506, 1067
BstH2I	RGCGCY	1 cut(s)	224
BstMAI	GTCTC	4 cut(s)	1572, 1976, 2446, 3230
BstMCI	CGRYCG	1 cut(s)	326
BstNI	CCWGG	5 cut(s)	25, 178, 1419, 2522, 2962
BstNSI	RCATGY	2 cut(s)	1087, 1687
BstPAI	GACNNNNGTC	1 cut(s)	1554
BstPI	GGTNACC	1 cut(s)	1885
BstSFI	CTRYAG	3 cut(s)	1602, 2280, 2421
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	9 cut(s)	52, 82, 98, 159, 174, 188, 205, 506, 1067
BstV2I	GAAGAC	3 cut(s)	457, 2461, 2976
BstX2I	RGATCY	4 cut(s)	372, 1432, 2063, 3080
BstXI	CCANNNNNNTGG	1 cut(s)	1201
BstYI	RGATCY	4 cut(s)	372, 1432, 2063, 3080
Bsu36I	CCTNAGG	2 cut(s)	792, 1584
BsuRI	GGCC	4 cut(s)	74, 476, 2504, 2525
BtgI	CCRYGG	2 cut(s)	75, 203
BtrI	CACGTC	2 cut(s)	676, 3212
BtsCI	GGATG	4 cut(s)	1865, 2354, 2719, 2970
BtsI	GCAGTG	6 cut(s)	75, 1666, 2815, 3003, 3168, 3228
BtsIMutI	CAGTG	9 cut(s)	75, 1376, 1666, 1851, 2815, 2938, 3003, 3168, 3228
BtuMI	TCGCGA	1 cut(s)	506
BveI	ACCTGC	2 cut(s)	372, 2175
Cac8I	GCNNGC	7 cut(s)	54, 166, 330, 383, 504, 563, 2719
Cfr10I	RCCGGY	5 cut(s)	10, 252, 289, 520, 3257
Cfr13I	GGNCC	9 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2503, 2865
Cfr42I	CCGCGG	1 cut(s)	206
CseI	GACGC	7 cut(s)	16, 74, 170, 384, 535, 1958, 3032
Csp6I	GTAC	4 cut(s)	190, 196, 758, 2669
CviQI	GTAC	4 cut(s)	190, 196, 758, 2669
DrdI	GACNNNNNNGTC	2 cut(s)	1941, 3110
DseDI	GACNNNNNNGTC	2 cut(s)	1941, 3110
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	6 cut(s)	819, 858, 1162, 1606, 2056, 2889
EarI	CTCTTC	6 cut(s)	819, 858, 1162, 1606, 2056, 2889
EciI	GGCGGA	1 cut(s)	712
Ecl136II	GAGCTC	1 cut(s)	415
Eco24I	GRGCYC	2 cut(s)	417, 1592
Eco31I	GGTCTC	2 cut(s)	1572, 2446
Eco32I	GATATC	1 cut(s)	1507
Eco47I	GGWCC	8 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2865
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	4 cut(s)	425, 750, 1152, 2583
Eco81I	CCTNAGG	2 cut(s)	792, 1584
Eco88I	CYCGRG	1 cut(s)	631
Eco91I	GGTNACC	1 cut(s)	1885
EcoICRI	GAGCTC	1 cut(s)	415
EcoO109I	RGGNCCY	3 cut(s)	1132, 1206, 2865
EcoO65I	GGTNACC	1 cut(s)	1885
EcoRI	GAATTC	1 cut(s)	2003
EcoRII	CCWGG	5 cut(s)	23, 176, 1417, 2520, 2960
EcoRV	GATATC	1 cut(s)	1507
EcoT22I	ATGCAT	2 cut(s)	1921, 2014
EcoT38I	GRGCYC	2 cut(s)	417, 1592
Esp3I	CGTCTC	2 cut(s)	1976, 3230
FalI	AAGNNNNNCTT	4 cut(s)	2961, 2993, 3059, 3091
FaqI	GGGAC	6 cut(s)	686, 1145, 1497, 1929, 1947, 2503
FauI	CCCGC	6 cut(s)	525, 570, 607, 686, 1063, 1120
FbaI	TGATCA	3 cut(s)	1366, 1770, 2980
FblI	GTMKAC	2 cut(s)	266, 1182
FokI	GGATG	4 cut(s)	1852, 2361, 2726, 2977
FriOI	GRGCYC	2 cut(s)	417, 1592
FspBI	CTAG	4 cut(s)	1380, 1926, 2310, 3309
GsaI	CCCAGC	2 cut(s)	1566, 2439
GsuI	CTGGAG	6 cut(s)	194, 245, 939, 1052, 3116, 3175
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	74, 476, 2504, 2525
HgaI	GACGC	7 cut(s)	16, 74, 170, 384, 535, 1958, 3032
Hin1I	GRCGYC	5 cut(s)	8, 107, 162, 395, 527
HincII	GTYRAC	4 cut(s)	267, 946, 1532, 2238
HindII	GTYRAC	4 cut(s)	267, 946, 1532, 2238
HindIII	AAGCTT	2 cut(s)	1164, 2764
HphI	GGTGA	7 cut(s)	506, 535, 1376, 1377, 1637, 1812, 1897
Hpy166II	GTNNAC	9 cut(s)	198, 267, 514, 946, 1183, 1532, 1820, 2134, 2238
Hpy8I	GTNNAC	9 cut(s)	198, 267, 514, 946, 1183, 1532, 1820, 2134, 2238
HpyCH4III	ACNGT	4 cut(s)	1360, 1477, 2918, 2933
HpyCH4IV	ACGT	3 cut(s)	107, 675, 3211
HpySE526I	ACGT	3 cut(s)	107, 675, 3211
Hsp92I	GRCGYC	5 cut(s)	8, 107, 162, 395, 527
Kpn2I	TCCGGA	1 cut(s)	483
Ksp22I	TGATCA	3 cut(s)	1366, 1770, 2980
KspI	CCGCGG	1 cut(s)	206
LguI	GCTCTTC	1 cut(s)	1162
LmnI	GCTCC	9 cut(s)	90, 117, 180, 213, 226, 283, 486, 929, 3263
LweI	GCATC	9 cut(s)	982, 1586, 1726, 1928, 1999, 2212, 2339, 2704, 2867
MaeI	CTAG	4 cut(s)	1380, 1926, 2310, 3309
MaeII	ACGT	3 cut(s)	107, 675, 3211
MbiI	CCGCTC	2 cut(s)	183, 693
MfeI	CAATTG	2 cut(s)	1552, 1766
MflI	RGATCY	4 cut(s)	372, 1432, 2063, 3080
MhlI	GDGCHC	5 cut(s)	417, 563, 1376, 1592, 3268
MlyI	GAGTC	9 cut(s)	466, 547, 584, 1188, 2354, 2543, 2930, 3120, 3280
MmeI	TCCRAC	3 cut(s)	590, 1999, 2242
Mph1103I	ATGCAT	2 cut(s)	1921, 2014
MroI	TCCGGA	1 cut(s)	483
MroXI	GAANNNNTTC	2 cut(s)	3011, 3183
MseI	TTAA	6 cut(s)	2015, 2297, 2444, 2574, 2768, 3066
MslI	CAYNNNNRTG	3 cut(s)	1088, 1883, 2738
MspA1I	CMGCKG	5 cut(s)	205, 602, 728, 1623, 3094
MunI	CAATTG	2 cut(s)	1552, 1766
MvaI	CCWGG	5 cut(s)	25, 178, 1419, 2522, 2962
MvnI	CGCG	9 cut(s)	52, 82, 98, 159, 174, 188, 205, 506, 1067
NciI	CCSGG	5 cut(s)	218, 350, 478, 2179, 3291
NmuCI	GTSAC	6 cut(s)	491, 523, 1876, 1885, 2103, 2933
NruI	TCGCGA	1 cut(s)	506
NsiI	ATGCAT	2 cut(s)	1921, 2014
NspI	RCATGY	2 cut(s)	1087, 1687
OliI	CACNNNNGTG	1 cut(s)	1883
PaqCI	CACCTGC	1 cut(s)	372
PciI	ACATGT	1 cut(s)	1083
PciSI	GCTCTTC	1 cut(s)	1162
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	3011, 3183
PflFI	GACNNNGTC	2 cut(s)	106, 394
PleI	GAGTC	9 cut(s)	465, 547, 584, 1187, 2354, 2543, 2930, 3119, 3280
PpsI	GAGTC	9 cut(s)	465, 547, 584, 1187, 2354, 2543, 2930, 3119, 3280
PpuMI	RGGWCCY	3 cut(s)	1132, 1206, 2865
PscI	ACATGT	1 cut(s)	1083
PshAI	GACNNNNGTC	1 cut(s)	1554
Psp124BI	GAGCTC	1 cut(s)	417
Psp5II	RGGWCCY	3 cut(s)	1132, 1206, 2865
Psp6I	CCWGG	5 cut(s)	23, 176, 1417, 2520, 2960
PspEI	GGTNACC	1 cut(s)	1885
PspFI	CCCAGC	2 cut(s)	1562, 2435
PspGI	CCWGG	5 cut(s)	23, 176, 1417, 2520, 2960
PspPI	GGNCC	9 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2503, 2865
PspPPI	RGGWCCY	3 cut(s)	1132, 1206, 2865
PstI	CTGCAG	1 cut(s)	1606
PsuI	RGATCY	4 cut(s)	372, 1432, 2063, 3080
PsyI	GACNNNGTC	2 cut(s)	106, 394
PvuII	CAGCTG	1 cut(s)	3094
RruI	TCGCGA	1 cut(s)	506
RsaI	GTAC	4 cut(s)	191, 197, 759, 2670
RsaNI	GTAC	4 cut(s)	190, 196, 758, 2669
RseI	CAYNNNNRTG	3 cut(s)	1088, 1883, 2738
SacI	GAGCTC	1 cut(s)	417
SacII	CCGCGG	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	1162
SaqAI	TTAA	6 cut(s)	2015, 2297, 2444, 2574, 2768, 3066
Sau96I	GGNCC	9 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2503, 2865
SchI	GAGTC	9 cut(s)	466, 547, 584, 1188, 2354, 2543, 2930, 3120, 3280
SduI	GDGCHC	5 cut(s)	417, 563, 1376, 1592, 3268
SfaNI	GCATC	9 cut(s)	982, 1586, 1726, 1928, 1999, 2212, 2339, 2704, 2867
SfcI	CTRYAG	3 cut(s)	1602, 2280, 2421
Sfr303I	CCGCGG	1 cut(s)	206
SgrAI	CRCCGGYG	2 cut(s)	289, 520
SgrBI	CCGCGG	1 cut(s)	206
SgrDI	CGTCGACG	1 cut(s)	265
SinI	GGWCC	8 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2865
SmiMI	CAYNNNNRTG	3 cut(s)	1088, 1883, 2738
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SspI	AATATT	1 cut(s)	2707
SspMI	CTAG	4 cut(s)	1380, 1926, 2310, 3309
SstI	GAGCTC	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	1360, 1477, 2918, 2933
TaiI	ACGT	3 cut(s)	110, 678, 3214
TaqI	TCGA	9 cut(s)	266, 296, 411, 441, 639, 1119, 1173, 2007, 3021
Tru1I	TTAA	6 cut(s)	2015, 2297, 2444, 2574, 2768, 3066
Tru9I	TTAA	6 cut(s)	2015, 2297, 2444, 2574, 2768, 3066
TscAI	CASTG	9 cut(s)	75, 1376, 1673, 1858, 2815, 2938, 3003, 3168, 3235
TseFI	GTSAC	6 cut(s)	491, 523, 1876, 1885, 2103, 2933
Tsp45I	GTSAC	6 cut(s)	491, 523, 1876, 1885, 2103, 2933
TspGWI	ACGGA	4 cut(s)	53, 223, 602, 693
TspRI	CASTG	9 cut(s)	75, 1376, 1673, 1858, 2815, 2938, 3003, 3168, 3235
Tth111I	GACNNNGTC	2 cut(s)	106, 394
VpaK11BI	GGWCC	8 cut(s)	250, 595, 1132, 1206, 1238, 1934, 2249, 2865
XapI	RAATTY	4 cut(s)	1518, 2003, 2651, 3062
XceI	RCATGY	2 cut(s)	1087, 1687
XmiI	GTMKAC	2 cut(s)	266, 1182
XmnI	GAANNNNTTC	2 cut(s)	3011, 3183
XspI	CTAG	4 cut(s)	1380, 1926, 2310, 3309
ZraI	GACGTC	1 cut(s)	108
Zsp2I	ATGCAT	2 cut(s)	1921, 2014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.