Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Forward (+)

16680209 .. 16682881

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAAGACGGTGAGCTTGATTTCTCCAATCAGGAAGTGTTTTCGAGTTCGGAGATGGGTGAATTACCACCTAGCAATTGTTCGATGGATAGTTTCTTTGATGGGCTTTTAATGGATACTAATGCTGCTTGTACCCACACTCACACCTGTAACCCCACTGGACCAGAGAACACTCATACTCACACGTGCTTCCATGTCCACACCAAGATTCTCCCGGATGAGAGCGATGAAAAAGTTTCTACTGATGATACAGCTGAGTCTTGTGGGAAGAAGGGTGAAAAGAGACCTTTGGGAAACCGGGAAGCGGTTAGAAAGTATAGAGAGAAGAAGAAGGCTAAAGCTGCTTCTTTGGAGGATGAGGTTGCAAGGCTTAGGGCGGTGAATCAGCAGCTGGTGAAGAGGTTGCAAAATCAGGCTACCTTGGAAGCTGAGGTTTCGAGGCTTAAGTGTTTGCTTGTGGATTTGAGAGGAAGAATAGATGGAGAGATTGGATCTTTTCCTTATCAGAAACCTATGGCTGCAAATATTCCTTCTTTCTCGCACATGATGAATCCTTGTAATGTACAATGTGATGATGAAGTTTATTGCCCTCAGAATGTGTTTGGAGTGAATAGCCAAGAAGGTGCCTCGATCAATGACCAAGGGTTAAGTGGTTGTGATTTTGATCAGCTACAATGCATGGCTAATCAGAACTTAAATGGAAATGGAAACGGATCATTCAGCAACGTCAATACATCTGTCTCGAATAAGAGAAAAGGTGGGCATCGTGCATCAAGAGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

261

Amino Acids

28.67

Weight (kDa)

5.52

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	91 - 144	2.3e-12	Basic region leucine zipper
bZIP_1	PF00170	91 - 148	7.6e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AciI	CCGC	2 cut(s)	305, 377
AclWI	GGATC	2 cut(s)	499, 721
AcvI	CACGTG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	133, 564
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	183
AluBI	AGCT	6 cut(s)	16, 254, 341, 391, 428, 670
AluI	AGCT	6 cut(s)	16, 254, 341, 391, 428, 670
Alw26I	GTCTC	2 cut(s)	277, 745
AlwI	GGATC	2 cut(s)	499, 721
AlwNI	CAGNNNCTG	1 cut(s)	391
ApeKI	GCWGC	4 cut(s)	125, 341, 388, 518
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	215, 299
AsuHPI	GGTGA	5 cut(s)	23, 71, 287, 391, 406
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	623
BbrPI	CACGTG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	112, 328, 400, 505
BccI	CCATC	4 cut(s)	49, 79, 95, 473
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	2 cut(s)	215, 299
BcoDI	GTCTC	2 cut(s)	277, 745
BfaI	CTAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	4 cut(s)	126, 342, 389, 519
BlsI	GCNGC	4 cut(s)	127, 343, 390, 520
Bme1390I	CCNGG	2 cut(s)	215, 299
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	625
BmrFI	CCNGG	2 cut(s)	215, 299
BmsI	GCATC	2 cut(s)	772, 779
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	2 cut(s)	371, 429
BpuMI	CCSGG	2 cut(s)	215, 299
BsaAI	YACGTR	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	420, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	420, 640
BseGI	GGATG	2 cut(s)	223, 361
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	3 cut(s)	246, 420, 605
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	112, 328, 400, 505
BshNI	GGYRCC	1 cut(s)	623
BsiSI	CCGG	2 cut(s)	215, 298
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	277, 745
Bso31I	GGTCTC	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	491, 630, 664, 713
BspACI	CCGC	2 cut(s)	305, 377
BspCNI	CTCAG	3 cut(s)	247, 421, 604
BspLI	GGNNCC	1 cut(s)	625
BspPI	GGATC	2 cut(s)	499, 721
BspT107I	GGYRCC	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	277
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	420, 640
BssMI	GATC	4 cut(s)	491, 630, 664, 713
BssT1I	CCWWGG	2 cut(s)	420, 640
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	392
BstAFI	CTTAAG	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	562
BstBAI	YACGTR	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	255, 371, 429, 591
BstF5I	GGATG	2 cut(s)	223, 361
BstKTI	GATC	4 cut(s)	494, 633, 667, 716
BstMAI	GTCTC	2 cut(s)	277, 745
BstMBI	GATC	4 cut(s)	491, 630, 664, 713
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 776
BstSCI	CCNGG	2 cut(s)	213, 297
BstV1I	GCAGC	4 cut(s)	112, 328, 400, 505
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	223, 361
BtsIMutI	CAGTG	1 cut(s)	156
CaiI	CAGNNNCTG	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	132, 563
CviAII	CATG	3 cut(s)	194, 544, 679
CviQI	GTAC	2 cut(s)	132, 563
DdeI	CTNAG	4 cut(s)	255, 371, 429, 591
DpnI	GATC	4 cut(s)	493, 632, 666, 715
DpnII	GATC	4 cut(s)	491, 630, 664, 713
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	420, 640
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	161
Eco72I	CACGTG	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	420, 640
EcoT22I	ATGCAT	1 cut(s)	680
ErhI	CCWWGG	2 cut(s)	420, 640
FaeI	CATG	3 cut(s)	197, 547, 682
FaiI	YATR	6 cut(s)	177, 195, 318, 515, 545, 680
FatI	CATG	3 cut(s)	193, 543, 678
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	4 cut(s)	126, 342, 389, 519
FokI	GGATG	2 cut(s)	230, 368
Fsp4HI	GCNGC	4 cut(s)	126, 342, 389, 519
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	4 cut(s)	126, 342, 389, 519
HapII	CCGG	2 cut(s)	215, 298
Hin1II	CATG	3 cut(s)	197, 547, 682
HinfI	GANTC	4 cut(s)	208, 257, 382, 550
HpaII	CCGG	2 cut(s)	215, 298
HphI	GGTGA	5 cut(s)	23, 71, 287, 391, 406
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	52, 507, 594, 690
Hpy188III	TCNNGA	3 cut(s)	32, 742, 774
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	265, 325, 540, 614
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	185, 726
HpyCH4V	TGCA	5 cut(s)	365, 406, 521, 678, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 776
HpyF3I	CTNAG	4 cut(s)	255, 371, 429, 591
HpySE526I	ACGT	2 cut(s)	185, 726
Hsp92II	CATG	3 cut(s)	197, 547, 682
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	491, 630, 664, 713
LpnPI	CCDG	8 cut(s)	17, 144, 160, 177, 228, 311, 377, 398
Lsp1109I	GCAGC	4 cut(s)	112, 328, 400, 505
LweI	GCATC	2 cut(s)	772, 779
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	185, 726
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	4 cut(s)	493, 632, 666, 715
MboI	GATC	4 cut(s)	491, 630, 664, 713
MboII	GAAGA	6 cut(s)	17, 280, 337, 340, 409, 483
MfeI	CAATTG	1 cut(s)	76
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	2 cut(s)	62, 76
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	8 cut(s)	346, 352, 393, 424, 432, 461, 600, 637
Mph1103I	ATGCAT	1 cut(s)	680
MseI	TTAA	4 cut(s)	110, 444, 647, 695
MspA1I	CMGCKG	2 cut(s)	254, 391
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	2 cut(s)	215, 298
MspR9I	CCNGG	2 cut(s)	215, 299
MunI	CAATTG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	341, 776
NciI	CCSGG	2 cut(s)	215, 299
NdeII	GATC	4 cut(s)	491, 630, 664, 713
NlaIII	CATG	3 cut(s)	197, 547, 682
NlaIV	GGNNCC	1 cut(s)	625
NsiI	ATGCAT	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	208, 382, 550
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	127, 343, 390, 520
PleI	GAGTC	1 cut(s)	265
PmaCI	CACGTG	1 cut(s)	186
PmlI	CACGTG	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	186
PspCI	CACGTG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	625
PspPI	GGNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	491
PvuII	CAGCTG	2 cut(s)	254, 391
RsaI	GTAC	2 cut(s)	133, 564
RsaNI	GTAC	2 cut(s)	132, 563
SaqAI	TTAA	4 cut(s)	110, 444, 647, 695
SatI	GCNGC	4 cut(s)	126, 342, 389, 519
Sau3AI	GATC	4 cut(s)	491, 630, 664, 713
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	215, 299
SfaNI	GCATC	2 cut(s)	772, 779
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	62, 76
SsiI	CCGC	2 cut(s)	305, 377
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	213, 297
StyI	CCWWGG	2 cut(s)	420, 640
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	188, 729
TaqI	TCGA	5 cut(s)	44, 83, 437, 629, 743
TasI	AATT	2 cut(s)	62, 76
TatI	WGTACW	1 cut(s)	562
TfiI	GAWTC	3 cut(s)	208, 382, 550
Tru1I	TTAA	4 cut(s)	110, 444, 647, 695
Tru9I	TTAA	4 cut(s)	110, 444, 647, 695
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	4 cut(s)	125, 341, 388, 518
TspDTI	ATGAA	3 cut(s)	243, 563, 591
TspGWI	ACGGA	1 cut(s)	726
TspRI	CASTG	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XspI	CTAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.