Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003185

Physical Location & Seq

Genomic Coordinates Reverse (-)

1207949 .. 1211009

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG010400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGACGACGGAGAGCTTGAATTTTCGAACCAGGAGCTTGATTTTTCGATTCCAAACATGACCGGTGAGCTTCCGAGTAGTTGCTCCATGGAGAATATTTTCGGTGACTTCTTCAAGGAGACTGATACTGCTTGCACTCACAACCACATTTGCAACCCTCCCTCGGGCCCTGACTCGTCTCATAGGCACACTTGCATTCATGTCCACACTAAGATTTTGTCCTCTGGGCAAAGTGAGGACAAGGCTGGAACTGATGATACTGCCGAGTCTGGGGAGAAGAACTCCAAGAAAAGGCCTTTGGGTAATCGGGAAGCTGTTCGCAAGTACCGGGAGAAGAAGAAGGCTCGAGCCGCCTCGTTGGAGGATGAGGTTATCAGGTTGAGAGCTGTGAATCAGCAGCTGATGAAGAGGTTGCAGGGTCAGGCTGCATTGGAGGCCGAGATTGCGAGGCTCAAGTGTTTGCTTGTGGACATTAGGGGAAGGATTGAAGGAGAAATTGGATCTTTTCCGTATCAGAAGCCACTGAATCCGGGTCTGCAGAATCCGAACATGACCGCTTCTTATGTGATGAATCCATGTAACATGCAGTGCGATGATCAGCTTTATTGCCTTCAACGAGGGAATGATGGAAAACGTGGAGATGGTGCAGTGATGAATGGCCAAGGGTTTAGTGGTTGTGATTTTGAGAATCTTCAGTGTTTCACAAATCAGGATGGAGGATCAATGGGGATTTCTGGATGTGATCTTGGAAATGTGATGTTAGAATCCAATGTCAATCTTTCTGGCACAAAAAAGAGGAAAGGAGGGGCTCGAGCTGCAGCAGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010035 GO:0010038 GO:0010043 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

276

Amino Acids

30.13

Weight (kDa)

5.92

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	92 - 147	8.5e-12	Basic region leucine zipper
bZIP_1	PF00170	96 - 140	4.1e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16770 AT2G16770 AT4G35040 AT4G35040 AT4G35040 AT4G35040
fragaria_vesca	FvH4_2g01190 FvH4_2g01190 FvH4_2g01190
malus_domestica	MD05G1121500.v1.1 MD10G1124200.v1.1
prunus_persica	Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1 Prupe.8G165400_v2.0.a1
pyrus_communis	pycom05g11560
rosa_chinensis	RchiOBHm_Chr6g0251821
rosa_laevigata	RLG00000015427
rosa_multiflora	Rmu_co8227239.1_g000001 Rmu_sc0003965.1_g000002 Rmu_ssc0000213.1_g000117
rosa_roxburghii	Rroxscaffold_7G00216360
rosa_rugosa	Rorug05G0504100 Rorug05G0504200 Rorug05G0504300 Rorug05G0504400 Rorug05G0504500 Rorug05G0504600
rosa_samantha	Rh6AG015100 Rh6BG013400 Rh6CG010400 Rh6DG011600
rosa_wichuraiana	Rw6G001480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	351, 555
AclWI	GGATC	2 cut(s)	508, 727
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	677
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	4 cut(s)	163, 164, 270, 291
AgeI	ACCGGT	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	20, 115, 488, 614
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	4 cut(s)	281, 313, 480, 512
AluBI	AGCT	8 cut(s)	16, 37, 70, 314, 386, 400, 601, 815
AluI	AGCT	8 cut(s)	16, 37, 70, 314, 386, 400, 601, 815
Alw26I	GTCTC	2 cut(s)	113, 183
AlwI	GGATC	2 cut(s)	508, 727
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	3 cut(s)	163, 345, 810
AoxI	GGCC	4 cut(s)	166, 293, 435, 658
ApaI	GGGCCC	1 cut(s)	170
ApeKI	GCWGC	5 cut(s)	397, 425, 815, 818, 821
ApoI	RAATTY	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	62
Asp700I	GAANNNNTTC	2 cut(s)	98, 315
AspS9I	GGNCC	2 cut(s)	166, 167
AsuC2I	CCSGG	2 cut(s)	329, 531
AsuHPI	GGTGA	2 cut(s)	77, 116
AsuII	TTCGAA	1 cut(s)	26
AvaI	CYCGRG	3 cut(s)	163, 345, 810
BaeGI	GKGCMC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	660
BanII	GRGCYC	2 cut(s)	170, 811
BbvI	GCAGC	3 cut(s)	409, 412, 802
BccI	CCATC	3 cut(s)	620, 635, 707
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	2 cut(s)	329, 531
BcoDI	GTCTC	2 cut(s)	113, 183
BfmI	CTRYAG	2 cut(s)	536, 816
BisI	GCNGC	6 cut(s)	351, 398, 426, 816, 819, 822
BlsI	GCNGC	6 cut(s)	352, 399, 427, 817, 820, 823
Bme1390I	CCNGG	3 cut(s)	32, 329, 531
BmeT110I	CYCGRG	3 cut(s)	163, 345, 810
BmgT120I	GGNCC	2 cut(s)	166, 167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	3 cut(s)	32, 329, 531
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	2 cut(s)	329, 531
BsaJI	CCNNGG	3 cut(s)	87, 162, 661
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 164, 270, 291
Bse118I	RCCGGY	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	87, 162, 661
BseGI	GGATG	3 cut(s)	370, 718, 743
BseLI	CCNNNNNNNGG	4 cut(s)	163, 164, 270, 291
BseSI	GKGCMC	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	409, 412, 802
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	4 cut(s)	168, 295, 437, 660
BshTI	ACCGGT	1 cut(s)	62
BsiHKCI	CYCGRG	3 cut(s)	163, 345, 810
BsiSI	CCGG	3 cut(s)	63, 328, 530
BslI	CCNNNNNNNGG	4 cut(s)	163, 164, 270, 291
BsmAI	GTCTC	2 cut(s)	113, 183
BsmBI	CGTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	4 cut(s)	168, 295, 437, 660
BsoBI	CYCGRG	3 cut(s)	163, 345, 810
Bsp119I	TTCGAA	1 cut(s)	26
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	170, 811
Bsp143I	GATC	4 cut(s)	500, 595, 719, 742
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	2 cut(s)	351, 555
BspANI	GGCC	4 cut(s)	168, 295, 437, 660
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	2 cut(s)	540, 820
BspPI	GGATC	2 cut(s)	508, 727
BspT104I	TTCGAA	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	87, 162, 661
BssMI	GATC	4 cut(s)	500, 595, 719, 742
BssT1I	CCWWGG	2 cut(s)	87, 661
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	370, 718, 743
BstKTI	GATC	4 cut(s)	503, 598, 722, 745
BstMAI	GTCTC	2 cut(s)	113, 183
BstMBI	GATC	4 cut(s)	500, 595, 719, 742
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 434, 443, 815, 821
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	3 cut(s)	30, 327, 529
BstSFI	CTRYAG	2 cut(s)	536, 816
BstSLI	GKGCMC	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	409, 412, 802
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	168, 295, 437, 660
BtgI	CCRYGG	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	3 cut(s)	370, 718, 743
BtsI	GCAGTG	2 cut(s)	593, 654
BtsIMutI	CAGTG	4 cut(s)	521, 593, 654, 701
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	166, 167
Csp6I	GTAC	1 cut(s)	325
CspAI	ACCGGT	1 cut(s)	62
CviAII	CATG	6 cut(s)	58, 88, 200, 550, 576, 583
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	4 cut(s)	502, 597, 721, 744
DpnII	GATC	4 cut(s)	500, 595, 719, 742
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco130I	CCWWGG	2 cut(s)	87, 661
Eco147I	AGGCCT	1 cut(s)	295
Eco24I	GRGCYC	2 cut(s)	170, 811
Eco57I	CTGAAG	1 cut(s)	677
Eco88I	CYCGRG	3 cut(s)	163, 345, 810
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	87, 661
EcoT38I	GRGCYC	2 cut(s)	170, 811
ErhI	CCWWGG	2 cut(s)	87, 661
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	6 cut(s)	61, 91, 203, 553, 579, 586
FaiI	YATR	8 cut(s)	59, 89, 183, 201, 551, 564, 577, 584
FatI	CATG	6 cut(s)	57, 87, 199, 549, 575, 582
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	6 cut(s)	351, 398, 426, 816, 819, 822
FokI	GGATG	3 cut(s)	377, 725, 750
FriOI	GRGCYC	2 cut(s)	170, 811
Fsp4HI	GCNGC	6 cut(s)	351, 398, 426, 816, 819, 822
GluI	GCNGC	6 cut(s)	351, 398, 426, 816, 819, 822
HaeIII	GGCC	4 cut(s)	168, 295, 437, 660
HapII	CCGG	3 cut(s)	63, 328, 530
Hin1II	CATG	6 cut(s)	61, 91, 203, 553, 579, 586
HinfI	GANTC	9 cut(s)	49, 173, 266, 391, 526, 541, 571, 688, 764
HpaII	CCGG	3 cut(s)	63, 328, 530
HphI	GGTGA	2 cut(s)	77, 116
Hpy166II	GTNNAC	2 cut(s)	205, 469
Hpy188I	TCNGA	3 cut(s)	75, 516, 546
Hpy188III	TCNNGA	3 cut(s)	308, 710, 735
Hpy8I	GTNNAC	2 cut(s)	205, 469
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	334, 474, 482, 620
HpyCH4IV	ACGT	1 cut(s)	634
HpyCH4V	TGCA	9 cut(s)	135, 153, 195, 415, 428, 538, 586, 647, 818
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 434, 443, 815, 821
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	634
Hsp92II	CATG	6 cut(s)	61, 91, 203, 553, 579, 586
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	500, 595, 719, 742
LmnI	GCTCC	2 cut(s)	34, 89
Lsp1109I	GCAGC	3 cut(s)	409, 412, 802
MaeII	ACGT	1 cut(s)	634
MaeIII	GTNAC	2 cut(s)	104, 578
MalI	GATC	4 cut(s)	502, 597, 721, 744
MboI	GATC	4 cut(s)	500, 595, 719, 742
MboII	GAAGA	6 cut(s)	103, 289, 346, 349, 418, 683
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	2 cut(s)	170, 811
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	3 cut(s)	20, 495, 826
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	2 cut(s)	167, 275
MmeI	TCCRAC	1 cut(s)	339
Mox20I	TGGCCA	1 cut(s)	660
MroXI	GAANNNNTTC	2 cut(s)	98, 315
MscI	TGGCCA	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	3 cut(s)	63, 328, 530
MspR9I	CCNGG	3 cut(s)	32, 329, 531
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	350, 434, 443, 815, 821
NciI	CCSGG	2 cut(s)	329, 531
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	4 cut(s)	500, 595, 719, 742
NlaIII	CATG	6 cut(s)	61, 91, 203, 553, 579, 586
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	2 cut(s)	289, 463
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	26
PaeR7I	CTCGAG	2 cut(s)	345, 810
PceI	AGGCCT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	195
PdmI	GAANNNNTTC	2 cut(s)	98, 315
PfeI	GAWTC	7 cut(s)	49, 391, 526, 541, 571, 688, 764
PinAI	ACCGGT	1 cut(s)	62
PkrI	GCNGC	6 cut(s)	352, 399, 427, 817, 820, 823
PleI	GAGTC	2 cut(s)	167, 274
PpsI	GAGTC	2 cut(s)	167, 274
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	168
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	166, 167
PspXI	VCTCGAGB	2 cut(s)	345, 810
PsrI	GAACNNNNNNTAC	2 cut(s)	241, 273
PstI	CTGCAG	2 cut(s)	540, 820
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	6 cut(s)	351, 398, 426, 816, 819, 822
Sau3AI	GATC	4 cut(s)	500, 595, 719, 742
Sau96I	GGNCC	2 cut(s)	166, 167
SchI	GAGTC	2 cut(s)	167, 275
ScrFI	CCNGG	3 cut(s)	32, 329, 531
SduI	GDGCHC	2 cut(s)	170, 811
SfcI	CTRYAG	2 cut(s)	536, 816
Sfr274I	CTCGAG	2 cut(s)	345, 810
SfuI	TTCGAA	1 cut(s)	26
SlaI	CTCGAG	2 cut(s)	345, 810
SmlI	CTYRAG	3 cut(s)	345, 452, 810
SmoI	CTYRAG	3 cut(s)	345, 452, 810
Sse9I	AATT	3 cut(s)	20, 495, 826
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	2 cut(s)	351, 555
SspI	AATATT	1 cut(s)	97
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	30, 327, 529
StyI	CCWWGG	2 cut(s)	87, 661
TaiI	ACGT	1 cut(s)	637
TaqI	TCGA	4 cut(s)	26, 47, 346, 811
TasI	AATT	3 cut(s)	20, 495, 826
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	7 cut(s)	49, 391, 526, 541, 571, 688, 764
TscAI	CASTG	4 cut(s)	528, 593, 654, 701
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	5 cut(s)	397, 425, 815, 818, 821
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	188, 419, 584, 668
TspGWI	ACGGA	2 cut(s)	24, 498
TspRI	CASTG	4 cut(s)	528, 593, 654, 701
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XhoI	CTCGAG	2 cut(s)	345, 810
XmnI	GAANNNNTTC	2 cut(s)	98, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.